Issue 28, 2024, Issue in Progress

Reparameterization of GFN1-xTB for atmospheric molecular clusters: applications to multi-acid–multi-base systems

Abstract

Atmospheric molecular clusters, the onset of secondary aerosol formation, are a major part of the current uncertainty in modern climate models. Quantum chemical (QC) methods are usually employed in a funneling approach to identify the lowest free energy cluster structures. However, the funneling approach highly depends on the accuracy of low-cost methods to ensure that important low-lying minima are not missed. Here we present a reparameterized GFN1-xTB model based on the clusteromics I–V datasets for studying atmospheric molecular clusters (AMC), denoted AMC-xTB. The AMC-xTB model reduces the mean of electronic binding energy errors from 7–11.8 kcal mol−1 to roughly 0 kcal mol−1 and the root mean square deviation from 7.6–12.3 kcal mol−1 to 0.81–1.45 kcal mol−1. In addition, the minimum structures obtained with AMC-xTB are closer to the ωB97X-D/6-31++G(d,p) level of theory compared to GFN1-xTB. We employ the new parameterization in two new configurational sampling workflows that include an additional meta-dynamics sampling step using CREST with the AMC-xTB model. The first workflow, denoted the “independent workflow”, is a commonly used funneling approach with an additional CREST step, and the second, the “improvement workflow”, is where the best configuration currently known in the literature is improved with a CREST + AMC-xTB step. Testing the new workflow we find configurations lower in free energy for all the literature clusters with the largest improvement being up to 21 kcal mol−1. Lastly, by employing the improvement workflow we massively screened 288 new multi-acid–multi-base clusters containing up to 8 different species. For these new multi-acid–multi-base cluster systems we observe that the improvement workflow finds configurations lower in free energy for 245 out of 288 (85.1%) cluster structures. Most of the improvements are within 2 kcal mol−1, but we see improvements up to 8.3 kcal mol−1. Hence, we can recommend this new workflow based on the AMC-xTB model for future studies on atmospheric molecular clusters.

Graphical abstract: Reparameterization of GFN1-xTB for atmospheric molecular clusters: applications to multi-acid–multi-base systems

Supplementary files

Article information

Article type
Paper
Submitted
23 Apr 2024
Accepted
16 Jun 2024
First published
21 Jun 2024
This article is Open Access
Creative Commons BY license

RSC Adv., 2024,14, 20048-20055

Reparameterization of GFN1-xTB for atmospheric molecular clusters: applications to multi-acid–multi-base systems

Y. Knattrup, J. Kubečka, H. Wu, F. Jensen and J. Elm, RSC Adv., 2024, 14, 20048 DOI: 10.1039/D4RA03021D

This article is licensed under a Creative Commons Attribution 3.0 Unported Licence. You can use material from this article in other publications without requesting further permissions from the RSC, provided that the correct acknowledgement is given.

Read more about how to correctly acknowledge RSC content.

Social activity

Spotlight

Advertisements