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Modular within and between score for drug response prediction in cancer cell lines

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Abstract

Drug response prediction in cancer cell lines is vital to discover new anticancer drugs. However, it's still a challenging task to accurately predict drug responses in cancer cell lines. In this study, we presented a novel computational approach, named as MSDRP (modular within and between score for drug response prediction), to predict drug responses in cell lines. The method is based on a constructed heterogeneous drug–cell line network with multiple information. Compared with other state-of-the-art methods, MSDRP acquired better predictive performance, and identified potential associations between drugs and cell lines, which have been confirmed by the published literature. The source code of MSDRP is freely available at https://github.com/shimingwang1994/MSDRP.git.

Graphical abstract: Modular within and between score for drug response prediction in cancer cell lines

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Publication details

The article was received on 03 Nov 2019, accepted on 25 Nov 2019 and first published on 25 Nov 2019


Article type: Research Article
DOI: 10.1039/C9MO00162J
Mol. Omics, 2020, Advance Article

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    Modular within and between score for drug response prediction in cancer cell lines

    S. Wang and J. Li, Mol. Omics, 2020, Advance Article , DOI: 10.1039/C9MO00162J

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