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Efficient strand displacement amplification via stepwise movement of bipedal DNA walker on electrode surface for ultrasensitive detection of antibiotic

Abstract

DNA walkers, one of the artificial molecular machines which are constructed via smart synthetic DNA, have attracted rapidly growing attention of researchers in biosensing fields. In this work, we design an Exonuclease III (Exo III)-aided target-aptamer binding recycling (ETBR) activated bipedal DNA machine for highly sensitive electrochemical detection of antibiotic. To the best of our knowledge, this is the first time that the bipedal DNA machine has been applied in electrochemical sensing for antibiotics. On the one hand, the bipedal DNA walker exceeds the conventional single swing arm DNA walker in terms of walking efficiency and stability. On the other hand, ETBR strategy, along with the efficient strand displacement amplification via stepwise movement of bipedal DNA walker significantly promotes the signal amplification efficiency. Under optimal conditions, this bipedal DNA machine possesses a detection limit to 7.1 fM within a linear detection range from 10 fM to 100 pM. Moreover, this electrochemical biosensor is expected to detect wide variety of analytes by using corresponding target recognition probes. Thus, our proposed strategy offers a highly efficient, stable and practical platform for small molecule analysis.

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Article information


Submitted
18 Jan 2020
Accepted
10 Feb 2020
First published
11 Feb 2020

Analyst, 2020, Accepted Manuscript
Article type
Paper

Efficient strand displacement amplification via stepwise movement of bipedal DNA walker on electrode surface for ultrasensitive detection of antibiotic

R. Zhang, J. zhang, X. Qu, S. Li, Y. Zhao, S. Liu, Y. Wang, J. Huang and J. Yu, Analyst, 2020, Accepted Manuscript , DOI: 10.1039/D0AN00139B

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