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Issue 90, 2020
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Messenger RNA enrichment using synthetic oligo(T) click nucleic acids

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Abstract

Enrichment of mRNA is a key step in a number of molecular biology techniques, particularly in the rapidly growing field of transcriptomics. Currently, mRNA is isolated using oligo(thymine) DNA (oligo(dT)) immobilized on solid supports, which binds to the poly(A) tail of mRNA to pull the mRNA out of solution through the use of magnets or centrifugal filters. Here, a simple method to isolate mRNA by complexing it with synthetic click nucleic acids (CNAs) is described. Oligo(T) CNA bound efficiently to mRNA, and because of the insolubility of CNA in water, >90% of mRNA was readily removed from solution using this method. Simple washing, buffer exchange, and heating steps enabled mRNA's enrichment from total RNA, with a yield of 3.1 ± 1.5% of the input total RNA by mass, comparable to the yield from commercially available mRNA enrichment beads. Further, the integrity and activity of mRNA after CNA-facilitated pulldown and release was evaluated through two assays. In vitro translation of EGFP mRNA confirmed the translatability of mRNA into functional protein and RT-qPCR was used to amplify enriched mRNA from total RNA extracts and compare gene expression to results obtained using commercially available products.

Graphical abstract: Messenger RNA enrichment using synthetic oligo(T) click nucleic acids

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Supplementary files

Article information


Submitted
27 Aug 2020
Accepted
16 Oct 2020
First published
22 Oct 2020

Chem. Commun., 2020,56, 13987-13990
Article type
Communication

Messenger RNA enrichment using synthetic oligo(T) click nucleic acids

A. J. Anderson, H. R. Culver, T. R. Prieto, P. J. Martinez, J. Sinha, S. J. Bryant and C. N. Bowman, Chem. Commun., 2020, 56, 13987
DOI: 10.1039/D0CC05815G

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