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Issue 10, 2019
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A cell-based screening system for RNA polymerase I inhibitors

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Abstract

RNA polymerase I (RNA Pol I) is a “factory” that orchestrates the transcription of ribosomal RNA for constructing ribosomes as a primary workshop for protein translation to sustain cell growth. The deregulation of RNA Pol I often causes uncontrolled cell proliferation, leading to cancer. Efficient and reliable methods are needed for the identification of selective inhibitors of RNA Pol I. Yeast (Saccharomyces cerevisiae) is eukaryotic and represents a valuable model system to study RNA Pol I, especially with the availability of the X-ray crystal structure of the yeast homologue of RNA Pol I, offering a structural basis to selectively target this transcriptional machinery. Herein, we developed a cell-based screening strategy by establishing a stable yeast cell line with a stably integrated human RNA Pol I promoter and ribosomal DNA. The model system was validated using the well-known RNA Pol I inhibitor CX-5461 by measuring transcribed human rRNA as readout. Virtual screening coupled with compound library screening using this cell line enabled the identification of a new candidate inhibitor of RNA Pol I, namely, cerivastatin sodium. Furthermore, we used growth and transcription activity assays to biologically evaluate the hit compound. Preliminary studies demonstrated antiproliferative effects of cerivastatin sodium against human cancer cells, namely, A2780 and H460 cell lines. These results implicated cerivastatin sodium as a selective RNA Pol I inhibitor worthy of further development together with potential as a targeted anticancer therapeutic.

Graphical abstract: A cell-based screening system for RNA polymerase I inhibitors

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Supplementary files

Article information


Submitted
17 Apr 2019
Accepted
16 Jul 2019
First published
17 Jul 2019

Med. Chem. Commun., 2019,10, 1765-1774
Article type
Research Article

A cell-based screening system for RNA polymerase I inhibitors

X. Tan and S. G. Awuah, Med. Chem. Commun., 2019, 10, 1765
DOI: 10.1039/C9MD00227H

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