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Issue 22, 2019
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Semi-automatic instrumentation for nucleic acid extraction and purification to quantify pathogens on surfaces

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Abstract

Public lavatories may cause the spread of infectious pathogens because they are enclosed spaces that both healthy people and patients can use. Thus, surface analysis for microbial contamination in public lavatories is of great importance because it is considered as an indicator of hygiene control. Herein, we developed polymerase chain reaction (PCR)-compatible surface sample preparation tools to increase the detection sensitivity and reproducibility within a short time using a semi-automatic detection system. The bacteria and viruses on different surfaces were collected using half A4-sized wipes. The wipes were treated through four different processes in a cartridge: (1) the pathogens were transferred from the wipes to the aqua phase using simple gentle vortexing; (2) the bacteria and viruses were concentrated by adsorption on the graphene surface; (3) the pathogens on the graphene layer were perfectly lysed using bead-beating tools and (4) the released DNA/RNA was collected in a microtube. The prepared nucleic acid sample was amplified using PCR or loop-mediated isothermal amplification (LAMP). At least one order of magnitude higher sensitivity was achieved using the wipe collecting method compared to that achieved using the normal swab method. This was confirmed using a semi-automatic cartridge for the wipe sampling in a lavatory hygiene test.

Graphical abstract: Semi-automatic instrumentation for nucleic acid extraction and purification to quantify pathogens on surfaces

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Publication details

The article was received on 16 May 2019, accepted on 22 Sep 2019 and first published on 27 Sep 2019


Article type: Paper
DOI: 10.1039/C9AN00896A
Analyst, 2019,144, 6586-6594

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    Semi-automatic instrumentation for nucleic acid extraction and purification to quantify pathogens on surfaces

    W. Lee, H. J. Yoo, K. H. Nguyen, C. Baek and J. Min, Analyst, 2019, 144, 6586
    DOI: 10.1039/C9AN00896A

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