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Issue 5, 2016
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Metal-responsive structural transformation between artificial DNA duplexes and three-way junctions

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Abstract

DNA three-way junctions (3WJs) are essential structural motifs for DNA nanoarchitectures and DNA-based materials. We report herein a metal-responsive structural transformation between DNA duplexes and 3WJs using artificial oligonucleotides modified with a 2,2′-bipyridine (bpy) ligand. A mixture of bpy-modified DNA strands and natural complementary strands were self-assembled exclusively into duplexes without any transition metal ions, while they formed 3WJs in the presence of NiII ions. This transformation was induced by the formation of an interstrand NiII(bpy)3 complex, which served as a template for the 3WJ assembly. Altering the amount and identity of the metal ion regulated the 3WJ induction efficiency. Removal of the metal using EDTA quantitatively regenerated the duplexes. The metal-dependent structural conversion shown here has many potential applications in the development of stimuli-responsive DNA materials.

Graphical abstract: Metal-responsive structural transformation between artificial DNA duplexes and three-way junctions

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Publication details

The article was received on 26 Jan 2016, accepted on 15 Feb 2016 and first published on 16 Feb 2016


Article type: Edge Article
DOI: 10.1039/C6SC00383D
Citation: Chem. Sci., 2016,7, 3006-3010
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    Metal-responsive structural transformation between artificial DNA duplexes and three-way junctions

    Y. Takezawa, S. Yoneda, J. H. A. Duprey, T. Nakama and M. Shionoya, Chem. Sci., 2016, 7, 3006
    DOI: 10.1039/C6SC00383D

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