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Issue 1, 2015
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Azidophenyl as a click-transformable redox label of DNA suitable for electrochemical detection of DNA–protein interactions

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Abstract

New redox labelling of DNA by an azido group which can be chemically transformed to nitrophenyltriazole or silenced to phenyltriazole was developed and applied to the electrochemical detection of DNA–protein interactions. 5-(4-Azidophenyl)-2′-deoxycytidine and 7-(4-azidophenyl)-7-deaza-2′-deoxyadenosine nucleosides were prepared by aqueous-phase Suzuki cross-coupling and converted to nucleoside triphosphates (dNTPs) which served as substrates for incorporation into DNA by DNA polymerase. The azidophenyl-modified nucleotides and azidophenyl-modified DNA gave a strong signal in voltammetric studies, at −0.9 V, due to reduction of the azido function. The Cu-catalyzed click reaction of azidophenyl-modified nucleosides or azidophenyl-modified DNA with 4-nitrophenylacetylene gave nitrophenyl-substituted triazoles, exerting a reduction peak at −0.4 V under voltammetry, whereas the click reaction with phenylacetylene gave electrochemically silent phenyltriazoles. The transformation of the azidophenyl label to nitrophenyltriazole was used for electrochemical detection of DNA–protein interactions (p53 protein) since only those azidophenyl groups in the parts of the DNA not shielded by the bound p53 protein were transformed to nitrophenyltriazoles, whereas those covered by the protein were not.

Graphical abstract: Azidophenyl as a click-transformable redox label of DNA suitable for electrochemical detection of DNA–protein interactions

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Supplementary files

Article information


Submitted
26 Jun 2014
Accepted
09 Sep 2014
First published
16 Sep 2014

This article is Open Access
All publication charges for this article have been paid for by the Royal Society of Chemistry

Chem. Sci., 2015,6, 575-587
Article type
Edge Article
Author version available

Azidophenyl as a click-transformable redox label of DNA suitable for electrochemical detection of DNA–protein interactions

J. Balintová, J. Špaček, R. Pohl, M. Brázdová, L. Havran, M. Fojta and M. Hocek, Chem. Sci., 2015, 6, 575
DOI: 10.1039/C4SC01906G

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