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Issue 3, 2014
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A systematic study of chemogenomics of carbohydrates

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Abstract

Chemogenomics focuses on the interactions between biologically active molecules and protein targets for drug discovery. Carbohydrates are the most abundant compounds in natural products. Compared with other drugs, the carbohydrate drugs show weaker side effects. Searching for multi-target carbohydrate drugs can be regarded as a solution to improve therapeutic efficacy and safety. In this work, we collected 60 344 carbohydrates from the Universal Natural Products Database (UNPD) and explored the chemical space of carbohydrates by principal component analysis. We found that there is a large quantity of potential lead compounds among carbohydrates. Then we explored the potential of carbohydrates in drug discovery by using a network-based multi-target computational approach. All carbohydrates were docked to 2389 target proteins. The most potential carbohydrates for drug discovery and their indications were predicted based on a docking score-weighted prediction model. We also explored the interactions between carbohydrates and target proteins to find the pathological networks, potential drug candidates and new indications.

Graphical abstract: A systematic study of chemogenomics of carbohydrates

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Publication details

The article was received on 28 Nov 2013, accepted on 07 Jan 2014 and first published on 10 Jan 2014


Article type: Paper
DOI: 10.1039/C3MB70534J
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Citation: Mol. BioSyst., 2014,10, 391-397
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    A systematic study of chemogenomics of carbohydrates

    J. Gu, F. Luo, L. Chen, G. Yuan and X. Xu, Mol. BioSyst., 2014, 10, 391
    DOI: 10.1039/C3MB70534J

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