Open Access Article
Bengi Sentürk
a,
Siebe Lekanne Deprez
b,
Westley Hennesen
a,
Célia Fonseca Guerra
b and
Fabian Eisenreich
*a
aDepartment of Chemical Engineering and Chemistry, Institute for Complex Molecular Systems, Eindhoven University of Technology, 5600 MB, Eindhoven, The Netherlands. E-mail: f.r.eisenreich@tue.nl
bDepartment of Chemistry and Pharmaceutical Sciences, AIMMS, Vrije Universiteit Amsterdam, De Boelelaan 1108, Amsterdam 1081 HZ, The Netherlands
First published on 9th June 2026
Replacing even a single atom can profoundly alter the performance of photoswitches. Yet, using this strategy to co-tune light-responsiveness and supramolecular function in photoswitches remains unexplored. We synthesized two series of semicarbazone photoswitches, varying the C
X unit (X = O, S, Se) and the substituent on the imine moiety (phenyl vs. methoxy-pyridyl). UV-vis spectroscopy and DFT analysis reveal a red-shift in absorption towards the visible region as the πHOMO–πLUMO gap narrows from O to Se. In parallel, heavier chalcogens increase the E → Z photoisomerization quantum yield. Beyond these optical effects, chalcogen substitution reshapes hydrogen-bonding pathways. In the phenyl series, it amplifies supramolecular self-association, yielding more stable π–π stacked, hydrogen-bonded aggregates. In the pyridyl series, it reinforces intramolecular hydrogen bonding, locking the sulfur and selenium analogue in the Z-isomer, whereas the oxygen derivative remains exclusively in the E-form. In mixtures of O-, S-, and Se-derivatives, we achieve wavelength-selective, stepwise deactivation of supramolecular aggregates, switching off the strongest associating species first. Overall, swapping a single chalcogen atom provides control over where these photoswitches absorb, how they isomerize, and how they self-associate. More broadly, this atom-level modification offers a strategy to modify both photophysics and supramolecular organization across carbonyl-containing photoswitch families.
Photoswitches provide a particularly sensitive platform to probe this principle. These molecules undergo reversible structural changes enabling precise control over molecular properties in contexts ranging from adaptive materials13 and photopharmacology14 to supramolecular polymers.15 Because their electronic structure is highly responsive, even small modifications to the core or its substituents can strongly affect absorption spectra, isomerization barriers, and thermal stability.16–20 To translate these light-induced changes into supramolecular function, most designs append hydrogen-bonding motifs to photochromic scaffolds, such as azobenzenes,21–30 diarylethenes,31,32 and stiff-stilbenes.33 In our previous work,34 we took a different approach and introduced thiosemicarbazones as a new photoswitch class, in which the hydrogen-bonding motif is embedded directly into the switching core. In both appended and embedded designs, however, tuning is typically achieved by varying substituents around an otherwise fixed core. This raises the question of whether much subtler single-atom changes within the core can be used systematically to control not only photophysical properties but also supramolecular interactions.
Chalcogen substitution has been explored sporadically in photoswitch design and is used as a structural variant to adjust photophysics. For instance, hemithioindigos,35 a distinct photoswitch family, arise from an O → S substitution of hemiindigos,36 which shifts the lowest-energy absorption band to shorter wavelength, while remaining in the visible region.37 Thermal half-lives also change, without a consistent trend across derivatives.37 In alkoxy-substituted azobenzenes,38 chalcogen substitution (S → Se → Te) produces a pronounced bathochromic shift of the n → π* absorption (Δλmax ≈ 100 nm across the series); while tellurium substitution suppresses photoswitching under ambient conditions. Related heteroatom exchanges have been reported in a few other photochromes, such as fulgides,39 diarylethenes,40,41 and N-acylketoenamines.42 In contrast, carbonyl-containing photoswitches, such as hydrazones,43,44 acylhydrazones,45 donor–acceptor Stenhouse adducts,46 and thiosemicarbazones,34 are particularly well suited for systematic O → S/Se exchange at the carbonyl position, yet this approach has not been examined.
Here, semicarbazone photoswitches serve as a model platform to test whether targeted substitution at the carbonyl heteroatom can simultaneously tune photoswitch performance and supramolecular binding. While we introduced thiosemicarbazone photoswitches in our earlier report,34 the corresponding oxygen analogues remain comparatively underexplored,47 and selenosemicarbazone photoswitches are essentially unknown. In this work, we show that systematic O/S/Se exchange within the semicarbazone switching unit governs both photophysical and supramolecular properties (Fig. 1): it red-shifts absorption, alters PSS distributions and thermal half-lives, as well as strengthens intra- and intermolecular noncovalent interactions, while preserving clean isosbestic behavior and good fatigue resistance. These coupled changes enable wavelength-selective, stepwise deactivation of semicarbazone association in mixed systems. Although our study focuses on semicarbazones, we anticipate that analogous single-atom substitution strategies could be explored in other photoswitch platforms to tune photophysics and, when combined with suitable interaction sites, supramolecular behavior.
The target compounds share a common framework and were synthesized using two complementary routes. In the first approach, aryl hydrazones were obtained by condensing hydrazine monohydrate with the corresponding aldehydes in ethanol, then converted to the final photoswitches by reaction with iso-, isothio-, or isoselenocyanates. The isoselenocyanates were prepared separately from elemental selenium and anilines under mild conditions.48 In the second, more direct route, commercially available semicarbazide derivatives were coupled with the aldehydes under reflux in ethanol in the presence of trifluoroacetic acid, providing the desired products. Both strategies afforded the O-, S-, and Se-containing analogues in high yields (74–99%). All compounds were purified by precipitation or column chromatography and fully characterized by NMR and FT-IR spectroscopy, as well as MALDI-TOF mass spectrometry (Fig. S1–S18). Photographs of the isolated compounds (Fig. 2a) already hint at the underlying electronic differences: the selenium analogues appear orange, indicating a red-shifted absorption into the visible range.
X unit for heavier chalcogens.49,50
UV-vis spectra of X-SC1E in chloroform reveal all three compounds absorb strongly in the near-UV through a π–π* transition with a clear chalcogen dependent trend: absorption maximum shifts from 294 nm (O-SC1E) to 321 nm (S-SC1E) and 340 nm (Se-SC1E, Fig. 2c). To rationalize these experimental observations at the molecular level, we examined the electronic structure of the X-SC1 series using DFT calculations. Conformational analysis identified the global minimum structures of the X-SC1 monomers (Fig. S37–S40). The experimental crystal structure previously reported for the thiosemicarbazone analogue (S-SC1E) was used as a structural reference,34 from which the oxygen and selenium analogues were generated by single-atom substitution at the C
X position prior to optimization. In agreement with experimental observations, the E-isomer is thermodynamically favored, while the Z-isomer lies higher in energy by 2.7–2.8 kcal mol−1 depending on the chalcogen atom. The E-isomers adopt a nearly planar geometry, and enforcing Cs symmetry introduces no energetic penalty. This planar structure enables a clear separation of σ and π electronic contributions and provides a suitable reference for analyzing the electronic transitions responsible for the optical response. The calculated πHOMO–πLUMO gap decreases from 3.1 eV for O-SC1E to 2.5 eV for S-SC1E and 2.2 eV for Se-SC1E, which is consistent with our experimental UV-vis results. The orbital analysis further indicates that the HOMO/LUMO pair in X-SC1E arises from bonding and antibonding combinations of the chalcogen npz orbital with a molecular π orbital on the semicarbazone framework. As the C
X bond lengthens from O to Se, the reduced orbital overlap leads to weaker bonding–antibonding splitting and hence a smaller πHOMO–πLUMO gap (Fig. 2d). This phenomenon aligns well with the study on aldehyde derivatives11 by Fonseca Guerra and co-workers. Thus, both experiment and theory demonstrate that exchanging a single atom at the C
X bond provides a direct means to tune the optical response of semicarbazone photoswitches.
N photoswitches such as hydrazones43–45 and imines,52 although this has not yet been systematically investigated. We deliberately avoided adding base, because deprotonation of the semicarbazone N–H groups would substantially alter both the absorption properties and the hydrogen-bonding interactions we aim to probe.
All three X-SC1 compounds exist exclusively as the thermodynamically favored E-isomer prior to irradiation (Fig. 3), as confirmed by 1H NMR spectroscopy in CDCl3 (Fig. S26–S28). Each derivative displays a high molar absorptivity (ε(λmax) = 21
000 for O-SC1; 33
000 for S-SC1; 26
000 M−1 cm−1 for Se-SC1, Table S2). For photoisomerization, the irradiation wavelength was chosen near the respective λmax (310 nm for O-SC1, 340 nm for S-SC1, and 365 nm for Se-SC1). Excitation at these wavelengths induced efficient E → Z photoisomerization. Due to the pronounced red-shift of the selenium derivative, efficient photoisomerization of Se-SC1 could also be achieved upon irradiation at 405 nm (Fig. S22). O-SC1 and S-SC1 reached PSS distributions of 26
:
74 and 42
:
58 (E
:
Z), respectively, while Se-SC1 underwent quantitative conversion to the Z-isomer under both 365 and 405 nm irradiation (Fig. S26–S28). Additional concentration-dependent NMR experiments on O-SC1, S-SC1, and Se-SC1 showed that the PSS compositions remained unchanged over the investigated concentration range of ∼1–11 mM (Fig. S26–S27). The resulting metastable Z-isomers relaxed thermally on comparable timescales, with half-lives (t1/2) of 26.5 (O-SC1), 29.5 (S-SC1), and 17.4 min (Se-SC1, Fig. S20–S22). In all cases, the UV-vis traces displayed clean isosbestic points throughout isomerization, consistent with a two-state process. Overall, chalcogen substitution shifts λmax and alters PSS composition, while leaving the thermal half-lives in the same range.
Turning to the X-SC2 series (Fig. 4), a striking difference emerged when these compounds were dissolved in CDCl3. While O-SC2 exists exclusively as the E-isomer and displays a molar absorptivity of 21
000 M−1 cm−1 at λmax, S-SC2 adopts predominantly the Z-isomer (∼93%). Because S-SC2 could not be obtained as a single pure isomer either at thermal equilibrium or upon photoirradiation, its molar absorptivity could not be reliably determined. In contrast, Se-SC2 is observed quantitatively in the Z-form, as confirmed by 1H NMR spectroscopy in CDCl3, and exhibits a molar absorptivity of 26
000 M−1 cm−1 (Fig. S29–S31). The pronounced Z-preference of S-SC2 and Se-SC2 can be rationalized by the formation of an internal hydrogen bond (N–Hb⋯Npyr). As the chalcogen becomes larger, the C
X bond lengthens and the π* orbital on the C
X fragment is stabilized, increasing its electron-accepting character in the π system. This enhances the interaction between the lone pair of the adjacent N–Hb group and the π* on C
X, rendering the N–Hb group more electron-deficient and hence a stronger hydrogen-bond donor. The resulting intramolecular hydrogen bonding therefore strengthens along the series.11 Upon irradiation at 310 nm, the O-analogue switched almost quantitatively to the Z-isomer (E
:
Z = 5
:
95, Fig. S23 and S29), but the process was irreversible, as the E-isomer could not be regenerated thermally or photochemically under these conditions. In contrast, both sulfur and selenium derivatives acted as P-type photoswitches. For S-SC2, irradiation at 365 nm enriched the E-isomer at PSS with E
:
Z = 84
:
16, while subsequent illumination with 340 nm regenerated the Z-isomer with E
:
Z = 29
:
71 (Fig. S24 and S30). Se-SC2 shows a similar behavior, reaching PSS values of E
:
Z = 58
:
42 upon 405 nm illumination and E
:
Z = 15
:
85 under 340 nm light (Fig. S25 and S31). Notably, no observable thermal back-relaxation was detected for either compound over 1 h at 20 °C. These results demonstrate P-type switching behaviour and show that chalcogen substitution controls not only absorption and PSS composition but also the reversibility of switching.
We next assessed fatigue resistance by subjecting the compounds to repeated switching cycles (Fig. S32 and S33). All three T-types photoswitches (O-SC1, S-SC1, and Se-SC1) exhibited reproducible changes in absorbance over multiple on–off cycles, indicating negligible photofatigue. Similarly, the P-type photoswitches S-SC2 and Se-SC2 could be cycled at their respective excitation wavelengths without significant loss of amplitude. To further quantify the influence of chalcogen substitution on the primary photochemical event, we determined the quantum yields of the X-SC1 and X-SC2 series (Table S3). For the X-SC1 series, the oxygen analogue showed a modest E → Z quantum yield of 0.19, which increased to 0.33 for the sulfur analogue and reached 0.44 for the selenium analogue. Similarly, O-SC2 (E → Z) and Se-SC2 (Z → E) displayed quantum yields of 0.20 and 0.45, respectively. Determination of the quantum yield for S-SC2 was not pursued because accurate isomer-specific molar absorptivity values could not be obtained. Overall, chalcogen substitution preserves robust photoswitching over multiple cycles while enhancing the intrinsic photochemical efficiency of the isomerization.
To clarify the nature of the associated species, we turned to DFT calculations (Fig. S40). Among the possible dimers, only a stacked motif was found to be thermodynamically accessible, whereas planar and chain-like hydrogen-bonded arrangements are disfavored. More importantly, the calculations reveal that a stacked tetramer [X-SC1E]4 is substantially more stable than the corresponding dimers, with ΔGtetra values of −4.1, −6.9, and −15.4 kcal mol−1 for X = O, S, and Se, respectively. Thus, although the NMR data were fitted using a monomer–dimer model, the calculations indicate that the dominant aggregated species is a hydrogen-bonded, π–π stacked tetramer rather than a simple dimer, and its stability follows the same O < S < Se trend inferred from the NMR analysis.
Energy-decomposition analyses of the tetramers indicate that aggregation is cooperatively stabilized by N–H⋯X
C hydrogen bonding and π–π stacking between the aromatic rings. In [O-SC1E]4, hydrogen bonding and π–π interaction contribute with comparable weight, whereas for [S-SC1E]4 and [Se-SC1E]4 π–π stacking becomes increasingly dominant and the hydrogen-bonding contribution decreases slightly (Tables S5 and S6). This shift correlates with stronger dispersion interactions for the heavier chalcogens, which likely contribute to the overall increase in tetramer stability from O to S to Se. Together, experiment and theory show that exchanging a single chalcogen atom does not simply strengthen a single hydrogen bond, but reorganizes the balance between hydrogen bonding and π–π stacking, yielding progressively more stable π–π stacked tetramers from O to Se. We further computed 1H NMR chemical shifts for monomers, dimers, and tetramers (Fig. S41, Tables S9 and S10). The calculated shifts reproduce the experimental trend and show pronounced deshielding of the N–Hb proton upon aggregation consistent with hydrogen bonding between N–Hb and the adjacent C
X group.
X unit of semicarbazone photoswitches provides a simple way to tune both their photochemical response and their intra- and intermolecular noncovalent interactions. Across two closely related series, O → S → Se substitution red-shifts the lowest-energy absorption band from 283 to 340 nm (Δλmax = 57 nm) and increases the E → Z photoisomerization quantum yield from 19% to 44% (≈130% relative increase). In the phenyl series, the same substitution pattern strengthens supramolecular self-association, as reflected in increasing apparent association constants and progressively more stable π–π stacked, hydrogen-bonded tetramers from O to S to Se. In the pyridyl derivatives, it instead intensifies intramolecular hydrogen bonding and inverts the relative stability of the E- and Z-isomers, making it possible to select the desired starting isomer by design. Thus, a single atomic position governs both light responsiveness and the strength and pattern of hydrogen bonding. Combinations of O-, S-, and Se-based semicarbazones therefore display an intrinsic ordering in how strongly they aggregate and at which wavelengths they can be addressed. We exploited this hierarchy by using different colors of light to reduce the contribution of Se- and O-based aggregates in a stepwise manner, while S-based aggregates remained present in solution.
In principle, the same concept could be extended to more complex settings. For example, incorporating semicarbazones into polymer backbones, side chains, or cross-linkers could allow different segments to respond at different wavelengths and on different time scales, enabling controlled changes in association and, ultimately, material properties. Semicarbazones are also known as organocatalysts53 and biologically active reagents,54 suggesting that wavelength-selective photoisomerization could offer an additional handle to tune function in these contexts. More broadly, our findings indicate that single-atom chalcogen substitution can serve as a practical design parameter for multifunctional photochromes. Other photoswitch families that contain a carbonyl unit (e.g., hydrazones, acylhydrazones, DASAs) may also be amenable to related tuning strategies. Such an approach could support the rational design of complex molecular assemblies, in which wavelength selectivity and interaction strength are tuned in tandem.
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