Open Access Article
Reyner D. Vargas
,
Samantha S. Cox
,
James O. Larkin,
Jingfei Dai,
Yuecheng Jiang
,
Ivan J. Yuan
,
Margaret A. Hankins
and
Zachary T. Ball
*
Department of Chemistry, Rice University, Bioscience Research Collaborative, 6100 Main Street, Houston, Texas 77005, USA. E-mail: zb1@rice.edu
First published on 28th May 2026
Boronic acids react reversibly with diols to form boronic ester derivatives, a process that can be used as a protecting group in multistep synthesis. Boronic ester formation is also an example of dynamic covalent chemistry that can be used for diverse applications, including polyol recognition, dynamic soft materials, and controlled drug release. Somewhat surprisingly, only limited quantitative structure–function relationships for boronic stability with different diols are available, with the consequence that it has been difficult to choose or design optimal reactivity, whether for multistep synthesis or for dynamic covalent applications. Here we report the first systematic study of a family of 1,2-diols that enable a series of boronic esters with tunable hydrolytic behavior and simple one-pot formation. Across a panel of aryl, heteroaryl, and bioactive boronic acids, we found that diol structure, electronics, and pH can be used together to modulate hydrolysis rates over a broad range while maintaining silica compatibility. This work establishes a practical dataset for rationally selecting boronic ester protecting groups to achieve predictable, mild, and temporally controlled access to free boronic acids in water under biocompatible conditions, and also provides a simple synthetic solution to some longstanding challenges in the preparation of complex boronic acids.
For such a widely studied field, there is surprisingly little quantitative data about the kinetics of boronic ester stability, especially regarding structure–function relationships of varying diols, rather than boronic acids, under physiologically relevant conditions.23–26 At least in part, this limited knowledge stems from the fact that simple 1,2-diols and catechols form boronic esters that hydrolyze too quickly in water to be easily measured. One recent example is a systematic study established reactivity differences among pinacol boronic esters.27 Thermodynamic affinity measurements (Kd or Ka) have been reported by numerous groups,20,28–30 but even there published data is often qualitative or relative.9 Kinetic data is essential for designing optimal drug release profiles, for engineering properties of dynamic materials, and even for optimizing deprotection strategies in multistep synthesis.
The most widely used boronic ester is pinacol (pin). Widespread usage continues in spite of broad recognition that pin esters have poor properties. Pin esters hydrolyze within minutes in neutral water, are prone to decomposition, and are notoriously incompatible with silica chromatography, complicating isolation and storage.31–33 To overcome the limitations of pin esters, alternative structures such as N-methyliminodiacetic acid (MIDA),34 1,8-diaminonaphthalene (DAN),35 and potassium trifluoroborate salts (BF3K)36 have been developed to form the corresponding boronic esters (Fig. 1c). While each of these have benefits, there are also limitations. The recent development of Xpin,37 a photocleavable diol, highlights what has been a fundamental tradeoff: improving robustness and chemical orthogonality has come hand in hand with requiring harsh or nonselective hydrolysis conditions.38–40
It is worth comparing the situation around boronic esters with that of another metalloid ester common in organic chemistry: the silyl ether. Primarily due to its longstanding role as a hydroxyl protecting group, hundreds of different silyl ethers have been studied, and comparative stability studies are numerous. While TBS, TES, TIPS, and TBDPS ethers are well known, many other silyl ethers are also well studied, and significant data is at hand to optimize silyl ether stability for a specific synthetic challenge, allowing mild, chemoselective unmasking at desirable reaction rates.41 In contrast, there are few comparative studies of boronic ester stability. The MIDA, DAN, and trifluoroborate examples noted above are significant because they represent some of the relatively few efforts to engineer molecular structure of boronic esters to optimize chemical properties.
Our efforts in this area were inspired by the recent development of Epin, a more sterically demanding analog of pin. This simple and clever alteration enhances the stability of the corresponding boronic esters relative to traditional pin derivatives.33
We, however, began to see the limitations of the Epin esters in our laboratory. In several syntheses of polyfunctional targets, we were unable to hydrolyze the final Epin ester without resorting to harsh conditions that led to decomposition (vide infra). For context, Epin boronic esters are reportedly stable to K3PO4 in boiling toluene/water mixtures.33 Relatedly, we found that most Epin esters have extremely slow hydrolysis kinetics under physiological conditions, making them unsuitable for slow-release drug delivery applications.42
Against this background, we recognized a broader need for a more predictable and tunable boronic acid caging strategy. In this paper, we introduce two new diols with stability intermediate between pin and Epin (Fig. 1c). We report what is, to our knowledge, the first comprehensive study and dataset mapping hydrolysis behavior across a family of 1,2-diol boronic esters, establishing a practical framework for predictable optimization of pinacol ester stability based on local sterics. Furthermore, we demonstrate that the new diols, Gpin and 3pin, facilitate synthesis and hydrolysis/deprotection of challenging polyfunctional target molecules that proved impossible with pin or Epin.
Although boronic esters are traditionally formed in aprotic solvents under dry and/or reflux conditions,33,43 we frequently encountered poor solubility, especially for functionalized boronic acid precursors. Seeking a more universal and simple solution, we screened a range of solvents and found, unexpectedly, that anhydrous methanol thoroughly solubilized the boronic acid and enabled high-yield ester formation. Quantitative conversion was achieved simply by rotary evaporation of the reaction mixture, affirmed by TLC, LC and/or NMR (Fig. 2c). This simple protocol proved effective for the synthesis of all boronic esters, including with the sterically demanding Epin diol, as well as for boronic-acid-containing drugs and peptides (see Fig. 4).
Our primary means of assessing the stability of boronic esters was to examine hydrolysis kinetics in aqueous environments. This measurement is, obviously, germane to drug delivery and biomaterials applications. We were also mindful of our own synthetic challenges, and we envisioned that hydrolysis of boronic esters in neutral water would be a method mild enough for even sensitive substrates. Before extensive studies of hydrolysis kinetics, we also examined stability on silica gel, since silica instability is perhaps the biggest stability challenge in working with pin esters. As expected, pinacol esters (pin) frequently exhibited smearing and signs of decomposition on silica. We were gratified to find, however, that Gpin and 3pin boronic esters are stable on silica gel, providing a single focused spot and allowing isolation from a column in high yield, similar to that observed with Epin (Fig. 3a and b).33
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| Fig. 3 Boronic esters characterization. (a) HPLC traces of the formed boronic esters. (b) TLC analysis. (c) Measurement of pseudo-first-order rate constants (khydrol) and half-lives (t1/2). | ||
Moving on to aqueous hydrolysis, boronic esters were dissolved in pH 7.4 PBS buffer (10 mM) and monitored by HPLC over time. All esters displayed clean first-order kinetics, and pseudo-first-order rate constants (khydrol) and half-lives (t1/2) values were readily measured (Fig. 3c). As expected, most pin esters hydrolyzed within a few minutes and exhibited t1/2 values too small to be measured. At the other extreme, several of the Epin esters were effectively indefinitely stable in water, with t1/2 values of many days.
We examined how electronic and structural features influence hydrolysis under mild aqueous conditions (Fig. 4). As expected, all compounds followed the trend of increased hydrolytic stability (Epin > 3pin > Gpin, Fig. 4), consistent with our earlier observations. However, significant variations in pseudo-first-order rate constants were observed. Electronic effects have a significant effect on boronic ester stability. Electron-rich arylboronic esters were more stable than other compounds (4–6, Fig. 4b). Electron-poor analogs had a more modest impact, but did exhibit faster hydrolysis, at least for some examples (7–9, Fig. 4c). We also examined a set of boronic acids with ortho substituents that have been reported to offer improved diol affinity (Fig. 4d), including a Wulff-type boronic acid (13)44,45 and ortho-fluoro structures that we previously employed for diol recognition.8 Somewhat surprisingly, ortho-fluoro substitution had minimal impact of hydrolysis rates, while the Wulff-type aminomethyl-substitution gave increased hydrolysis rates (Fig. 5).
We expanded the scope to more complex boronic acid-containing structures, including heterocyclic compounds (14–16, Fig. 4e), drugs and other bioactive compounds (17–20, Fig. 4f), and even unprotected borylated peptides (21, 22, Fig. 4g). The Gpin and 3pin esters were successfully formed and the stability measured across this set. For a small number of cases (e.g. 14-Epin) solubility challenges prevented analysis, although the reduced hydrophobicity of new pinacols, Gpin and 3pin, improved aqueous solubility and allowed analysis, underscoring the practical value of having access to a suite of simple pinacol derivatives for the specific demands of individual applications. One important conclusion of this study is the wide differences in kinetic stability observed, indicating that the correct choice of boronic ester will be structure-dependent.
We next examined how pH influences boronic ester hydrolysis under biocompatible conditions46 (Table 1). While boronic ester hydrolysis is often thought to be a complex process, governed by competing equilibria,20 we found a consistent trend in the range of biologically relevant pH: hydrolysis occurs more slowly at lower pH. Changes in rate were generally modest, however.
| Boronic ester | Hydrolysis half-life (h) | |||
|---|---|---|---|---|
| pH 6.8 | pH 7.4 | pH 8.0 | ||
| a Ester insoluble in buffer. | ||||
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3-Gpin | 5.8 | 5.6 | 5.1 |
| 3-3pin | 18.1 | 15.3 | 7.2 | |
| 3-Epin | 22.3 | 20.2 | 9.6 | |
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5-Gpin | 12.4 | 10.9 | 6.7 |
| 5-3pin | 69 | 61 | 49 | |
| 5-Epin | 112 | 99 | 61 | |
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8-Gpin | 0.3 | 0.2 | <0.1 |
| 8-3pin | 2.9 | 1.2 | 1.1 | |
| 8-Epin | 31.5 | 24.2 | 13.8 | |
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17-Gpin | 0.7 | <0.1 | <0.1 |
| 17-3pin | 2.8 | 2.3 | <0.1 | |
| 17-Epin | 40.0 | 13.6 | 4.7 | |
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18-Gpin | 5.3 | 4.6 | 2.7 |
| 18-3pin | 47.8 | 18.2 | 15.7 | |
| 18-Epin | –a | –a | –a | |
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19-Gpin | 7.4 | 5.7 | 2.1 |
| 19-3pin | 29 | 22 | 15 | |
| 19-Epin | –a | –a | –a | |
Hammett plots for a series of para-substituted Gpin phenylboronic esters were produced at pH 5.2 and pH 7.4. Both datasets yielded linear correlations with positive slopes, indicating that electron-withdrawing substituents accelerate hydrolysis.47 This behavior is consistent with a rate-determining nucleophilic attack at boron, during which negative character develops and is stabilized by electron-deficient aryl groups. More notably, the slope at pH 5.2 (ρ = 1.9) was nearly twice that at pH 7.4 (ρ = 1.0), revealing a stronger dependence on substituent electronics under acidic conditions.47 The data is consistent with our results (Table 1) that showed slower hydrolysis at lower pH levels.
The development of Gpin and 3pin solved two synthetic challenges within our lab (Fig. 6) that nicely illustrate the significant benefits of these diols for synthesis. In one project, we had a need to prepare pyridyl boronic acid derivative 24. Much to our surprise and frustration, both pin and Epin were incompatible with a simple, straightforward route (Fig. 6a). Pinacol esters were insufficiently stable: attempts to alkylate the hydroxy-pyridine 23-pin with alkyl halides led to complex mixtures, and we were unable to isolate the desired 24-pin. The improved stability of Epin nicely solves the issues related to intermediate instability, and we easily purified 24-Epin in reasonable yields. However, hydrolysis did not occur at mild temperatures, and elevated temperatures or other forcing conditions led to extensive decomposition. (For context, the Epin ester of a similar 3-pyridylboronic acid was reported to be stable to hydrolysis in the presence of K3PO4 in toluene/water up to 120 °C.33) In contrast, the corresponding 3pin ester was compatible with synthetic conditions and with silica chromatography of the intermediate (23-3pin), yet hydrolyzed readily in water at room temperature, affording the target alkyne-boronic acid in high yield (Fig. 6a).
In a second, unrelated, project, we needed to prepare a boronic acid-iridium conjugate 25 for bioconjugation driven by dynamic covalent chemistry (Fig. 6b).8 Similar to our experience synthesizing 24 neither pin nor Epin esters were compatible with a designed route to boronic acid 25. Early in this effort, we found that pin esters were insufficiently stable under HATU coupling conditions and silica chromatography, preventing isolation of amide 12-pin. As anticipated, Epin again dramatically improved the stability of intermediates 12-Epin and 25-Epin, but we again observed extensive decomposition of the sensitive iridium complex under the elevated temperatures needed to hydrolyze the boronic ester, and we were unable to observe or isolate the desired boronic acid 25. The Gpin diol solved this issue: corresponding Gpin intermediates (12-Gpin and 25-Gpin) were again compatible with synthetic conditions and with silica chromatography, and again the target boronic acid 25 was easily formed upon hydrolysis of 25-Gpin in water at pH 7.4. Taken together, Fig. 6 illustrates that Gpin and 3pin offer significant synthetic advantages in synthesizing structurally diverse boronic acids.
The diboron reagent B2pin2 is a common precursor to organoboron compounds, and access to an analogous Gpin analog would provide improved synthetic options. We were thus pleased to find that the analogous B2Gpin2 is readily available and can be used in place of B2pin2 to directly synthesize more stable boronic esters. A simple synthesis from B2(OH)4 (see page S6 for details) yielded B2Gpin2, which—unlike B2pin2—is stable on silica gel (Fig. 7). Under standard borylation conditions, we obtained an arylboronic ester 5-Gpin in nearly quantitative yield (Fig. 7). We attribute this improvement to the enhanced stability under both reaction and purification conditions.
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