Open Access Article
Mohammed El Mesky
*a,
Ismail bouadidb,
Fatimazahra Guerguerc,
Hicham Zguenia,
Yassine Rhazi
d,
Mohammed Chalkha
*ad,
Farid Khalloukib,
Samir Chtita
c,
Sahar Abdulaziz AlSedairye,
Mourad A. M. Aboul-Soud*f,
John P. Giesyghi,
Driss Chebabe
a,
El Houssine Mabroukad and
Mohamed Eddouksb
aLaboratory of Materials Engineering for the Environment and Natural Resources, Faculty of Sciences and Techniques, Moulay Ismail University of Meknès, B.P. 509, Boutalamine, 52000, Errachidia, Morocco. E-mail: m.elmesky@edu.umi.ac.ma; mohammed.chalkha1@usmba.ac.ma
bTeam of Ethnopharmacology and Pharmacognosy, Faculty of Sciences and Techniques Errachidia, Moulay Ismail University of Meknes, Errachidia, Morocco
cLaboratory of Analytical and Molecular Chemistry, Faculty of Sciences Ben M'Sik, Hassan II University of Casablanca, Casablanca, Morocco
dLaboratory of Engineering of Organometallic, Molecular Materials, Environment, and Innovative Pedagogy (LIMOMEPI), Faculty of Sciences Dhar EL Mahraz, Sidi Mohamed Ben Abdellah University, P.O. Box 1796 (Atlas), 30000 Fez, Morocco
eDepartment of Food Sciences and Nutrition, College of Food and Agricultural Sciences, King Saud University, P.O. Box 2460, Riyadh 11451, Saudi Arabia
fCenter of Excellence in Biotechnology Research (CEBR), College of Applied Medical Sciences, King Saud University, P.O. Box 17 10219, Riyadh 11433, Saudi Arabia. E-mail: maboulsoud@ksu.edu.sa
gDepartment of Veterinary Biomedical Sciences and Toxicology Centre, Western College of Veterinary Medicine, University of Saskatchewan, Saskatoon, SK S7N 5B4, Canada. E-mail: Jgiesy@aol.com
hDepartment of Integrative Biology and Center for Integrative Toxicology, Michigan State University, East Lansing, MI 48824, USA
iDepartment of Environmental Sciences, Baylor University, Waco, 76706, USA
First published on 17th April 2026
Functionalized xanthene hydrazone derivatives were synthesized using two distinct pathways. Two routes of synthesis, involving condensation and O-alkylation reactions, were adopted to synthesize the target compounds. The structures of the synthetised intermediates and xanthene hydrazone derivatives were confirmed through high-resolution mass spectrometry (HRMS), 1H-nuclear magnetic resonance (NMR), and 13C-NMR. Vasorelaxation assays indicated that derivatives modified solely by alkylation or condensation remained inactive. It was observed that compounds became active only when both functional groups were present simultaneously, highlighting the importance of the complementarity of the ester and hydrazone in the mechanism of action. Among the derivatives examined, compounds F3 and F4 exhibited the greatest potency as vasorelaxants, with EC50 values of 38.204 and 41.300 µg mL−1 and Emax values of 80.61% and 83.13%, respectively. While F3 and F4 displayed somewhat lower potency than verapamil (EC50 = 18.000 ± 1.00 µg mL−1; Emax = 61.67 ± 4.10%), they demonstrated significantly greater maximal effectiveness. These findings highlighted the great potential of compounds F3 and F4 as new vasorelaxant agents. Results of the in vitro tests on rat aortic rings that were pre-contracted using epinephrine revealed a clear correlation between both the chemical structure and biological activity. The results of molecular docking and molecular dynamics simulations show that F3 and F4 formed stable and robust binding modes with the human L-type calcium channel (CaV1.2). Furthermore, the in silico findings suggest that F3 and F4 possess acceptable ADMET properties, supporting their potential as promising drug candidates. Overall, the results indicate that these functionalized xanthene-hydrazone derivatives represent a promising foundation for the development of novel vasorelaxant agents.
Hypertension is defined as persistently elevated blood pressure, according to the WHO. It is a major health problem that affects more than one billion individuals worldwide and leads to nearly 10 million deaths each year.2 It is frequently referred to as the ‘silent killer’ since it usually does not show any warning signs for years. If left undetected and untreated, it can result in severe complications such as heart problems, strokes, kidney disease and retinal damage.3
Antihypertensive drugs are the standard treatment for high blood pressure. They are effective in controlling blood pressure and reducing cardiovascular risks. However, long-term use is often associated with side effects such as palpitations, persistent dry cough, constant fatigue, and even kidney complications. For many patients, these side effects make long-term adherence to treatment difficult.
One of the key mechanisms for combating hypertension is the relaxation of the smooth muscles of the blood vessels. This is why research is focusing on the development of more potent and better-tolerated vasorelaxant agents.4–6 The design of hybrid molecules, which combine several pharmacophores in a single structure, appears particularly promising. The concept is to combine complementary mechanisms capable of acting simultaneously on several biological pathways. By carefully assembling these elements, it is possible to improve the potency, selectivity and tolerance of the treatment, paving the way for a new generation of antihypertensive drugs that are both more effective and safer.7,8
In medicinal chemistry, the xanthene scaffold is considered highly versatile. For years, researchers have been exploring its derivatives, xanthones, fluorescein, rhodamine, with continuous discovery of new properties. These molecules exhibit a wide range of biological activities: antiviral,9 antihyperlipidemic effects,10 antibacterial action,11 anti-inflammatory,12 antimalarial activity,13 antimicrobial,14 anticancer,15 antileukemic,16 free radical scavenging,17 antitumor,18 and even capable of fighting certain cancers or promoting apoptosis. Some, such as certain xanthones and norathyriol, also show interesting potential for regulating blood pressure (Fig. 1).19
Recently, hydrazones and their derivatives have attracted considerable interest. They are relatively simple to synthesize and have a wide range of pharmacological effects.20 They possess a flexible and stable structure capable of forming hydrogen bonds. This explains their broad pharmacological activities: antihypertensive,21 antibacterial,22 antifungal,23 antiviral and even anticancer.24,25 By combining them with other functional groups, hybrid molecules with unique physicochemical properties can be obtained (Fig. 2). Their versatility often allows them to target several mechanisms at once, improving both their efficacy and selectivity. For these reasons, they are considered promising candidates for the design of new multifunctional drugs.26,27
Xanthene derivatives have interesting properties, particularly due to their ester and hydrazone groups. Therefore, we designed and synthesized new functionalised xanthene-based molecules and evaluated their vasorelaxant activity. Two synthesis routes were successfully used, and all compounds, both intermediates and final products, were characterised by NMR spectroscopy and high-resolution mass spectrometry. To investigate their vasorelaxant effects, we tested the compounds step by step, first the intermediates, then the final hybrids. This stepwise approach allowed us to better understand how the order of functionalisation influences the pharmacological behaviour of xanthene-hydrazone compounds. The results obtained provide valuable insights for improving and selecting the most promising candidates as potential vasodilators. In addition to the experiments, we conducted computational studies, including molecular docking and molecular dynamics simulations, to better understand the interactions with biological targets. An ADMET analysis was also performed to assess the therapeutic potential of these molecules.
:
1 ethyl acetate/hexane combination. Product FH was obtained as a fragile, white solid.The yield was 76% of a light off-white solid; 1H NMR (500 MHz, DMSO-d6): δ (ppm) = 4.40 (s, 2H, NH2), 9.02 (s, 2H, 2(–OH)), 7.91–7.85 (m, 1H, ArH), 7.58 (dtd, J = 21.4, 7.4, 1.2 Hz, 2H, ArH), 7.38 (dd, J = 6.8, 3.0 Hz, 2H, ArH), 7.31 (dd, J = 5.1, 1.9 Hz, 3H, ArH), 7.10 (dd, J = 7.4, 1.2 Hz, 1H, ArH), 6.62 (d, J = 2.3 Hz, 2H, ArH), 6.46 (d, J = 8.6 Hz, 2H, ArH), 6.42 (dd, J = 8.6, 2.4 Hz, 2H, ArH); 13C NMR (126 MHz, DMSO-d6): δ (ppm) = 164.17 (C
O), 159.13, 152.81, 150.91, 149.80, 135.04, 134.52, 130.89, 129.66, 129.65, 129.36, 128.54, 127.29, 124.36, 123.73, 112.85, 110.75, 103.01 (aromatic carbons), 65.93 (spiro carbon); HRMS (m/z): calculated for C20H14N2O4 345.09356, found [M–H]−: 345.08569.
The yield was 87%, a yellow solid, m. p.: 168–170 °C, f. r. = 0.52; 1H NMR (500 MHz, DMSO-d6): δ 7.77 (dd, J = 5.7, 3.1 Hz, 1H), 7.47 (dd, J = 5.7, 3.0 Hz, 2H), 7.00–6.94 (m, 1H), 6.78 (d, J = 2.6 Hz, 2H), 6.61 (dd, J = 8.5, 2.6 Hz, 2H), 6.51 (d, J = 8.8 Hz, 2H), 4.78 (s, 4H), 4.43 (s, 2H), 4.14 (q, J = 7.1 Hz, 4H), 1.21–1.15 (m, 6H); 13C NMR (126 MHz, DMSO-d6): δ 169.03, 166.17, 158.87, 152.79, 151.67, 133.32, 129.78, 129.24, 128.65, 123.97, 123.07, 112.86, 112.18, 102.32, 65.43, 64.95, 61.26, 14.57.
2-(Benzylideneamino)-3′,6′-dihydroxyspiro[isoindolin-3-one-1,9′-xanthene] F5 had a yield of 82.9%; m. p.: 188–190 °C, brown. F. r. (Ac
:
Hex) (3
:
2) = 0.50; 1H NMR (500 MHz, DMSO-d6) δ 9.84 (s, 2H), 9.02 (s, 1H), 7.91–7.85 (m, 1H), 7.58 (dtd, J = 21.4, 7.4, 1.2 Hz, 2H), 7.38 (dd, J = 6.8, 3.0 Hz, 2H), 7.31 (dd, J = 5.1, 1.9 Hz, 3H), 7.10 (dd, J = 7.4, 1.2 Hz, 1H), 6.62 (d, J = 2.3 Hz, 2H), 6.46 (d, J = 8.6 Hz, 2H), 6.42 (dd, J = 8.6, 2.4 Hz, 2H); 13C NMR (500 MHz, DMSO-d6) δ 164.17, 159.13, 152.81, 150.91, 149.80, 135.04, 134.52, 130.89, 129.66, 129.65, 129.36, 128.54, 127.29, 124.36, 123.73, 112.85, 110.75, 103.01, 65.93; HRMS (m/z): calculated for C27H18N2O4 435.12666, found 435.12768.
2-((4-Methoxybenzylidene)amino)-3′,6′-dihydroxyspiro[isoindolin-3-one-1,9′-xanthene] F6 had a yield of 85%; m. p: 192–194 °C, light yellow, f. r. (Ac
:
Hex) (3
:
2) = 0.60; 1H NMR (500 MHz, DMSO-d6) δ 9.92–9.75 (m, 2H), 8.99 (s, 1H), 7.89–7.84 (m, 1H), 7.57 (dtd, J = 19.0, 7.3, 1.2 Hz, 2H), 7.35–7.32 (m, 2H), 7.08 (d, J = 7.1 Hz, 1H), 6.88 (d, J = 1.9 Hz, 1H), 6.62 (d, J = 2.2 Hz, 2H), 6.47–6.40 (m, 4H), 5.71 (s, 1H), 3.70 (s, 3H); 13C NMR (500 MHz, DMSO-d6) δ 161.64, 159.07, 150.33, 134.29, 129.59, 128.97, 128.56, 124.30, 123.60, 114.87, 112.79, 102.97, 55.82; HRMS (m/z): calculated for C28H20N2O5 465.14722, found 465.14145.
2-((4-Nitrobenzylidene)amino)-3′,6′-dihydroxyspiro[isoindolin-3-one-1,9′-xanthene] F7 had a yield of 90.5%; m. p: 180–182 °C, yellow. F. r. (Ac
:
Hex) (3
:
2) = 0.66; 1H NMR (500 MHz, DMSO-d6) δ 10.02 (d, J = 112.9 Hz, 2H), 9.11 (s, 1H), 8.16 (d, J = 8.6 Hz, 2H), 7.91 (d, J = 7.5 Hz, 1H), 7.64 (dd, J = 7.9, 5.2 Hz, 3H), 7.58 (t, J = 7.4 Hz, 1H), 7.12 (d, J = 7.6 Hz, 1H), 6.64 (d, J = 2.3 Hz, 2H), 6.47 (d, J = 8.6 Hz, 2H), 6.42 (dd, J = 8.7, 2.4 Hz, 2H); 13C NMR (500 MHz, DMSO-d6) δ 164.56, 159.27, 152.77, 150.98, 148.54, 146.54, 141.20, 134.99, 129.82, 129.09, 128.50, 128.14, 124.65, 124.47, 123.97, 112.99, 110.44, 103.11, 66.14.; HRMS (m/z): calculated for C27H17N3O6 480.11174, found 480.11212.
For the second method, a flask containing one equivalent of the F5 and F7 derivatives was completely dissolved in DMF. Then 2.2 equivalents of K2CO3 were added, and a catalytic amount of BTBA (phase transfer catalyst) was added. At room temperature, the reaction mixture was stirred for thirty minutes. 2.2 equivalents of ethyl bromoacetate were then added to the mixture after it had been stirred until the desired xanthene hydrazone derivatives F2, F3 and F4 were generated. The mixture was added to cold water after the reaction, and the precipitate that formed was filtered off. The crude material was further purified by column chromatography using an appropriate solvent mixture as eluent to afford the pure products F2, F3 and F4.
The yield of diethyl 2,2′-((2-((4-nitrobenzylidene)amino)spiro[isoindolin-3-one-1,9′-xanthene]-3′,6′-diyl)bis(oxy))(E)-diacetate F2 was 93%, light yellow, m. p.: 151–153 °C, f. r. = 0.40; 1H NMR (500 MHz, DMSO-d6): δ 9.33 (s, 1H), 8.23–8.17 (m, 1H), 8.13 (ddd, J = 8.2, 2.4, 1.1 Hz, 1H), 7.98–7.87 (m, 1H), 7.79 (dt, J = 7.9, 1.3 Hz, 1H), 7.67–7.57 (m, 2H), 7.17 (dt, J = 7.8, 0.9 Hz, 1H), 6.88 (t, J = 1.5 Hz, 2H), 6.63 (d, J = 1.5 Hz, 5H), 4.79 (s, 4H), 4.11 (q, J = 7.1 Hz, 4H), 1.13 (t, J = 7.1 Hz, 6H). 13C NMR (126 MHz, DMSO-d6): δ 168.92, 164.39, 159.24, 152.81, 150.18, 148.74, 148.12, 136.83, 134.98, 133.30, 130.95, 130.09, 128.65, 125.11, 124.51, 124.12, 121.43, 112.95, 112.46, 102.52, 65.96, 65.45, 61.23, 40.33, 14.49. HRMS (m/z): calculated for C35H29N3O10 652.18529, found 652.18378 [M + H]+.
The yield of diethyl 2,2′-((2-(benzylideneamino)spiro[isoindoline-3-one-1,9′-xanthene]-3′,6′-diyl)bis(oxy))(E)-diacetate F3 was 78%, light yellow, m. p: 123–125 °C, f. r. = 0.37; 1H NMR (500 MHz, DMSO-d6): δ 9.21 (s, 1H), 7.93–7.88 (m, 1H), 7.65–7.56 (m, 2H), 7.40–7.33 (m, 2H), 7.31 (d, J = 7.3 Hz, 3H), 7.13 (d, J = 7.1 Hz, 1H), 6.86 (d, J = 1.9 Hz, 2H), 6.61 (d, J = 2.0 Hz, 4H), 4.79 (s, 4H), 4.12 (q, J = 7.1 Hz, 4H), 1.14 (t, J = 7.1 Hz, 6H); 13C NMR (126 MHz, DMSO-d6): δ 168.95, 164.14, 159.14, 152.72, 151.11, 150.29, 134.93, 134.66, 131.03, 129.97, 129.82, 129.33, 128.74, 127.35, 124.42, 123.92, 113.08, 112.40, 102.43, 65.43, 61.23, 14.53; HRMS (m/z): calculated for C35H30N2O8 607.20022, found 607.20333.
The yield of diethyl 2,2′-((2-((4-methoxybenzylidene)amino)spiro[isoindolin-3-one-1,9′-xanthene]-3′,6′-diyl)bis(oxy))(E)-diacetate F4 was 83.5%, white, m. p.: 136–138 °C, f. r. = 0.37; 1H NMR (500 MHz, DMSO-d6): δ 9.16 (s, 1H), 7.93–7.85 (m, 1H), 7.64–7.54 (m, 2H), 7.36–7.29 (m, 2H), 7.14–7.09 (m, 1H), 6.90–6.83 (m, 4H), 6.64–6.55 (m, 4H), 4.79 (s, 4H), 4.12 (q, J = 7.1 Hz, 4H), 3.70 (s, 3H), 1.14 (t, J = 7.1 Hz, 6H); 13C NMR (126 MHz, DMSO-d6): δ 168.97, 163.90, 161.73, 159.07, 152.71, 151.61, 150.26, 130.03, 129.00, 128.75, 127.46, 113.16, 112.33, 65.71, 65.39, 61.24, 14.54; HRMS (m/z): calculated for C36H32N2O9 637, 21078, found 636, 21326.
To measure the relaxation capacity of a compound, we tested different concentrations. After an equilibration phase, the aortic rings were contracted with epinephrine (10 µM). Once the contraction had stabilized, we gradually added increasing concentrations of the compound (12.5, 25, 37.5 and 50 µg mL−1), waiting 10 minutes between each addition for the response to stabilize. The compounds were solubilized in 1% DMSO. The DMSO concentrations used as controls were 0.0025%, 0.005%, 0.0075% and 0.01%. Control tests confirmed that the solvent had no significant effect on the vascular tone of the rings. Relaxation was expressed as a percentage of epinephrine-induced contraction, following a protocol already described in the literature.28
The structures of intermediates FH, F1, and F5 through 7, as well as that of the newly synthesized target molecules F2, F3 and F4 were checked using various spectroscopic techniques and mass spectrometry. The NMR results for compound F4 are presented as a representative example of this series. In the 1H NMR spectrum, a singlet is observed, corresponding to the six protons of the terminal methyl groups (–CH3) of the ethoxy chains. Another singlet at 4.79 ppm is assigned to the four protons of the two O–CH2 groups bonded to the aromatic ring, while a signal at 4.12 ppm corresponds to the O–CH2 protons associated with the ester function. A singlet at 3.70 ppm is assigned to the three protons of the methoxy group carried by the benzene ring. In addition, a singlet signal at 9.16 ppm is characteristic of the proton of the imine function (N
CH). Finally, the signals between 6.5 and 8 ppm are assigned to the aromatic protons. The 13C NMR spectrum of compound F4 shows four main signals at 65.39 ppm, 61.24 ppm, 55.78 ppm, and 14.54 ppm, corresponding respectively to the carbons of the O–CH2 methylene groups bonded to the aromatic ring, the ester methylene (CO–O–CH2), the C–CH3 carbon of the ethoxy group, and the methoxy group of the benzene ring. An additional signal at 65.71 ppm is attributed to the spiro carbon characteristic of the spiro-lactam form of fluorescein. The most relevant NMR signals for compound F4 are shown in Table 1.
High-resolution mass spectrometry of F4 revealed the pseudomolecular ion [M + H]+ at m/z 637.21328, consistent with the expected molecular mass. All NMR and HRMS spectra of the other synthesized compounds are given in the SI section.
| Compounds | EC50 (µg mL−1) | Emax (%) |
|---|---|---|
| FH | 0.000 ± 0.000 | 00.00 ± 0.00 |
| F1 | 0.000 ± 0.000 | 00.00 ± 0.00 |
| F2 | 113.000 ± 8.00 | 19,75 ± 4.10 |
| F3 | 38.204 ± 5.00 | 80.61 ± 6.00 |
| F4 | 41.300 ± 5.000 | 83.13 ± 6.20 |
| F5 | 0.000 ± 0.000 | 00.00 ± 0.00 |
| F6 | 0.000 ± 0.000 | 00.00 ± 0.00 |
| F7 | 0.000 ± 0.000 | 00.00 ± 0.00 |
| Verapamil | 18.000 ± 1.000 | 61.67 ± 4.10 |
The results show that fluorescein hydrazine (FH) does not exhibit significant vasorelaxant activity. This lack of efficacy suggests that its chemical structure, as designed, does not interact effectively with the membrane receptors or signalling pathways involved in vascular relaxation. Furthermore, derivatives modified at the O position, such as product F1, were also found to be inactive. This indicates that simple substitution on the hydroxyl group is not sufficient to confer pharmacological activity. Evaluation of N-functionalization, corresponding to the formation of the hydrazone function, showed that N-functionalized compounds (F5–F7) exert no significant vasorelaxant activity, with EC50 and Emax parameters remaining zero under our experimental conditions.
Double functionalization, combining modifications at the O and N positions, aimed to simultaneously modulate the polarity, lipophilicity and electron density of the fluorescein nucleus to optimize molecular recognition at the level of vascular receptors. This strategy yielded very different results: marked vasorelaxant activity, unlike the simple derivatives, which remained inactive. The EC50 and Emax values for compounds F2 to F4 reveal a clear hierarchy, which is dependent on the position and nature of the aromatic substituents introduced. This confirms the extent to which the chemistry of these groups influences pharmacological activity.
Compounds F3, bearing an unsubstituted aromatic ring, and F4, substituted by a methoxy group in the para position, exhibit moderate to good vasorelaxant activity. They differ markedly from fluorescein hydrazone (FH) and its simple derivatives F1 and F5 to F7, which are inactive. Their EC50 values are 38.204 and 41.3 µg mL−1 respectively, while their Emax values (80.61% and 83.13%) indicate significant activity. This improvement suggests that a moderate increase in the electron density of the aromatic ring promotes the recognition of compounds by receptors or channels involved in vasodilation. In contrast, the F2 derivative, substituted by a nitro group (NO2), shows a notable reduction in activity (EC50 = 113 µg mL−1; Emax = 19.75%). This substitution disrupts conjugation and impairs interaction with the biological target.
These collective findings establish a definitive structure–activity relationship that constitutes the central discovery of this study: dual functionalization at both O- and N-positions is strictly required for vasorelaxant activity. The complete inactivity of singly modified derivatives (F1, F5–F7) versus the marked potency of doubly functionalized congeners (F3, F4) demonstrates that neither the ethyl ester groups alone, nor the hydrazone moiety alone can activate the underlying biological mechanism. Instead, the simultaneous presence of both pharmacophores appears necessary to achieve the optimal balance of polarity, lipophilicity, and electron density required for effective interaction with vascular receptors or ion channels.
Results of docking simulations indicated that the two active compounds (F3 and F4) were all favorably situated within the CaV1.2 binding pocket, with binding energies of approximately −7.0 to −7.1 kcal mol−1, which were comparable to that of verapamil (−7.0 kcal mol−1) (Table 3). Supporting the findings of the biological tests, the compounds F3 (EC50 = 38.204 µg mL−1) and F4 (EC50 = 41.300 µg mL−1) were found to be the strongest CaV1.2 inhibitors, thus indicating their high binding affinity. 2D and 3D visual representations of the compounds F3 and F4, compared with verapamil (Fig. 5), were generated for analysis of the key interactions responsible for their enhanced affinity toward the CaV1.2 target. Verapamil exhibits a stabilizing network comprising hydrogen bonds and multiple hydrophobic contacts. Specifically, it forms a conventional hydrogen bond with Thr1056 (2.53 Å) and several carbon-hydrogen bonds with Ser1532 (3.45 Å), Met1509 (3.16 Å), and Ala1512 (3.55 Å), ensuring an optimal orientation of the ligand within the binding pocket. Additional hydrophobic interactions, including π-alkyl contacts with Val1053 (5.81 Å), Met1177 (5.20 Å), Met1178 (5.18 Å), and Ala1512 (4.59 Å), together with π-sigma interactions with Phe1181 (3.90 Å), further stabilize the complex. Compounds F3 and F4 exhibit a highly comparable interaction profile, forming conventional hydrogen bonds with Thr1057 (2.41 Å) and Ser1532 (2.75 Å), along with carbon–hydrogen bonds with Thr1056 (2.85 Å) and Ser1132 (3.30 Å). Stabilization is also reinforced by π-sigma interactions with Met1509 (3.70 Å) and π-alkyl contacts with Val1053 (5.45 Å), Ala1512 (5.37 Å), and Met1509 (4.54 Å and 4.59 Å). Notably, F3 forms an additional π-alkyl interaction that is absent in F4, probably because the methoxy substituent in F4 alters the aromatic orientation of the ligand within the binding pocket. Overall, both derivatives recapitulate almost all the important interactions observed for verapamil, taking the same polar and hydrophobic residues in the active site. This similarity in the interaction pattern explains why docking gave such close binding energies of (−7.0 to −7.1 kcal mol−1) and aligns with the experimental activity values. These results highlight the capability of F3 and F4 as high-affinity CaV1.2 ligands and provide a strong rationale for additional structural optimization and the development of congeners with increased activity.
| Compounds | F3 | F4 | Verapamil |
| Binding affinity kcal mol−1 | −7.1 | −7.1 | −7.0 |
![]() | ||
| Fig. 5 2D and 3D binding interactions of compounds F3, F4, and verapamil within the active site of CaV1.2 (PDB ID: 8HMB). | ||
Papp = 0.407 and 0.346, respectively) imply that their absorption is moderate, thus confirming their passive diffusion through the cell membranes. The volume of distribution (log
VDss) values was negative (−1.385 and −1.496 L kg−1, respectively), indicating limited tissue distribution, while the predicted log
BB values, all less than −1.0, confirm poor penetration across the blood–brain barrier (BBB), which could potentially reduce central side effects. Regarding metabolism, both compounds are predicted to act as substrates of CYP3A4, and neither compound inhibits CYP1A2, CYP2D6, or CYP3A4, except for F4, which shows slight inhibition of CYP3A4. However, both compounds display moderate inhibitory potential toward CYP2C19 and CYP2C9, suggesting an acceptable level of metabolic interaction and maintaining overall metabolic stability. The total clearance values (0.838 and 0.824 mL min−1 kg−1, respectively) further indicate adequate excretory efficiency. Concerning toxicity predictions (Table 5), both F3 and F4 were determined to be non-sensitizing to the skin, non-hepatotoxic, and non-mutagenic (negative Ames test), reflecting an overall favourable safety profile. However, both compounds were identified as potential hERG II inhibitors, which may raise concerns regarding cardiotoxicity. As hERG channel inhibition is associated with QT interval prolongation and arrhythmias, this aspect is particularly relevant for cardiovascular agents. Nevertheless, this prediction is based solely on in silico models, while the present study focused on vasorelaxant activity in rat aortic rings and interaction with the CaV1.2 channel. Therefore, further experimental studies are required to confirm this potential liability and ensure cardiac safety. Overall, these in silico findings suggest that F3 and F4 possess acceptable ADME-Tox properties, supporting their potential as promising drug candidates.
| Compounds | ADME properties | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Absorption | Distribution | Metabolism | Excretion | |||||||||
Caco2 perm. log Papp in 10−6 cm s−1 |
HIA% | VDss (log L kg−1) | BBB perm. (BB log) | CYP450 | Total clearance log ml min−1 kg−1 | |||||||
| Substrate | Inhibitor | |||||||||||
| 2D6 | 3A4 | 1A2 | 2C19 | 2C9 | 2D6 | 3A4 | ||||||
| Acceptable range | Log Papp > 0.90: high |
<30%: poorly absorbed | log VDss >0.45: high |
log BB < – 1: poorly distributed |
Categorical (yes/no) | — | ||||||
| F3 | 0.407 | 100 | −1.385 | −1.565 | No | Yes | No | Yes | Yes | No | No | 0.838 |
| F4 | 0.346 | 100 | −1.496 | −1.802 | No | Yes | No | Yes | Yes | No | Yes | 0.824 |
| Compounds | Toxicity | ||||
|---|---|---|---|---|---|
| AMES | Categorical (yes/no) | ||||
| hERG I | hERG II | Hepatotoxicity | Skin Sensitization | ||
| F3 | No | No | Yes | No | No |
| F4 | No | No | Yes | No | No |
Interaction analysis identified the key residues contributing to the stabilization of the complexes. The 8HMB-F3 complex (Fig. 7A) showed that the residues Tyr1508, Phe1181, and Met1509 with the highest interaction fractions of about 1.1, 0.9, and 0.7, respectively. These values reflect predominant hydrophobic and π–π interactions that persisted throughout the simulation, playing a crucial role in maintaining complex stability. The 8HMB-F4 complex (Fig. 7B) displayed a more evenly distributed interaction pattern, with interaction fractions exceeding 0.7 for Phe118, around 0.6 for Tyr1108, Met1129, and Ser1506, and between 0.4 and 0.5 for several additional residues. These interactions, having hydrophobic contacts, hydrogen bonds, and water bridges, also contributed to the overall stability of the complex. In contrast, verapamil (Fig. 7C) had an interaction with Gln1060 as the strongest one with a fraction around 1.0, along with secondary contacts with Phe1129 and Phe1181 (0.6, 0.7, respectively), reflecting the stabilization within the CaV1.2 active site. Overall, MD studies indicate that both F3 and F4 formed stable complexes with CaV1.2, with a slight preference for F3, as demonstrated by its decreased residue fluctuations and lower protein and ligand RMSD values at the active site, and maintained structural compactness. These results confirm the strong and stable binding modes of F3 and F4, supporting their potential as promising vasorelaxant agents.
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