Open Access Article
Nourhan M. Gada,
David S. A. Haneen
*a,
Mahmoud Kamal
b,
Eslam M. Hosni
b,
Mohamed H. Hekal
a,
Abdelaal A. Abdalhaa,
Wael S. I. Abou-Elmagd
a and
Sayed K. Ramadan
*a
aChemistry Department, Faculty of Science, Ain Shams University, Cairo, 11566, Egypt. E-mail: david.shoukry@sci.asu.edu.eg; sayed.karam2008@sci.asu.edu.eg
bEntomology Department, Faculty of Science, Ain Shams University, Cairo, 11566, Egypt
First published on 19th March 2026
A series of new nitrogen-containing heterocyclic compounds derived from a 2(3H)-furanone precursor was synthesized via reactions with mono- and bidentate nucleophiles, affording pyrrolone, benzoxazinone, quinazolinone, and pyridazine frameworks. The synthesized candidates were characterized spectroscopically and evaluated for larvicidal activity against third-instar Culex pipiens larvae, revealing a wide potency range (LC50 = 0.1–458.6 µg mL−1). Among them, compound 4 exhibited the highest toxicity (LC50 = 0.1 µg mL−1), while several others showed moderate activity (LC50 = 34–95 µg mL−1). Molecular docking against Culex acetylcholinesterase (AChE) and the methoprene-tolerant (Met) receptor indicated that the tested compounds engage catalytically relevant residues such as HIS567 and TRP212 in AChE and HIS23 in Met, though binding energies did not consistently parallel larvicidal potency. Molecular-dynamics simulations (100 ns) supported the stability of the ligand–protein complexes and provided structural evidence for the potential accommodation of the compounds within both targets. In silico ADME predictions revealed high gastrointestinal absorption, balanced lipophilicity, and generally good BBB permeability, with only minor differences, such as the non-BBB-permeant compounds 7, 8, and 14, that may influence access to neural targets. Overall, the combined experimental and computational findings suggest that larvicidal activity arises from a multifactorial interplay between molecular recognition, transport properties, and physicochemical balance rather than docking affinity alone. These results indicate that 2(3H)-furanone-derived heterocycles may represent promising scaffolds for further investigation as dual-target larvicidal candidates. The present findings may contribute to the rational design of next-generation mosquito control agents and support ongoing efforts toward developing more effective and sustainable strategies for vector-borne disease management.
Among them, chlorfenapyr, a pyrrole derivative, was used as a pesticide (Fig. 1). Also, pyrrole, benzoxazinone, quinazolinone, and pyridazine candidates were found to exhibit promising biological effects, including insecticidal, antimicrobial, antiviral, and antitumor activities depending on their structural features and substitution patterns.4,15–23 Their nitrogen, oxygen, and/or sulfur atoms are important for their biological efficacy through formation of distinct non-covalent interactions such as hydrophobic contacts, hydrogen bonding, dipole–dipole interactions and van der Waals forces with protein targets. In many ligand–protein systems, hydrogen bonding and hydrophobic contacts are among the most frequently observed interactions and play a central role in stabilizing ligand binding within the active site.24
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| Fig. 1 Structures of chlorfenapyr, and some reported pyrrolones I–III and pyridazinones IV, V with insecticidal activity. | ||
In 2025, two synthesized pyrrolones I and II (Fig. 1) revealed strong larvicidal activity with LC50 values of 0.4 and 4.9 µg mL−1, respectively, through which pyrrolone I outperformed the reference insecticide, chlorpyrifos.6 Also, three pyrrolone derivatives IIIa–c were highly toxic to Culex pipiens with LC50 of 21.05, 22.81, and 38.07 µg mL−1 compared to the reference, chlorfenapyr with LC50 of 25.43 µg mL−118 (cf. Fig. 1). In 2022, two pyridazinones IV and V (Fig. 1) were described as undertaking agents for the control of insect pests, where they were evaluated towards the third larval instar of lab and field strains of C. pipiens, which showed high toxicity, making them suitable for controlling C. pipiens at larval stage.5 Therefore, widespread research is still needed to advance and enhance their properties as insecticidal agents and to reduce their adverse effects.
Mosquito-borne diseases continue to represent a serious threat to global public health, with Culex pipiens serving as a major vector of pathogens such as West Nile virus, Rift Valley fever, and various filarial nematodes.25–29 The widespread and persisted use of chemical insecticides has led to rapid development of resistance within mosquito populations, undermining the effectiveness of conventional control programs. This resistance is often associated with genetic mutations in target enzymes and enhanced metabolic detoxification mechanisms that reduce insecticide sensitivity.30–33 Most traditional insecticides, including organophosphates and carbamates, act through the inhibition of acetylcholinesterase (AChE), resulting in the accumulation of acetylcholine at synapses and subsequent neuronal hyperexcitation.34–38 Although highly effective, the repeated use of these neurotoxic compounds has promoted the selection of resistant alleles and enzymatic variants of AChE, particularly those harboring mutations at the catalytic serine or oxyanion hole residues.39
To address this challenge, alternative molecular targets have gained attention, including the methoprene-tolerant (Met) receptor, a member of the basic helix–loop–helix Per-Arnt-Sim (bHLH-PAS) family that functions as the receptor for the juvenile hormone (JH). The Met receptor regulates critical developmental processes including metamorphosis, reproduction, and cuticle formation in insects.40–42 Juvenile hormone analogs (JHAs) such as pyriproxyfen and methoprene exploit this pathway by interfering with hormonal signaling, thereby preventing the pupal–adult transition and causing delayed mortality in larvae. Several compounds targeting these pathways have been approved and widely used in mosquito control programs, highlighting the practical importance of these molecular targets in vector management. Although JH-based insect growth regulators are safer for non-target organisms, their slow action makes them less efficient in short-term larval management. Consequently, combining fast-acting neurotoxicity with hormone disruption through dual-target insecticidal agents could offer an effective strategy to achieve potent larvicidal effects while minimizing the risk of resistance.40,41,43,44
Accordingly, our present study was designed not only to synthesize and evaluate new nitrogen-containing heterocyclic compounds derived from 2(3H)-furanone scaffolds, but also to explore their potential to act through different molecular mechanisms and targets. We hypothesized that such structural diversification could yield molecules capable of interacting with both the classical neurotoxic target (AChE) and the hormonal regulatory site (Met receptor), thereby providing a multitarget mode of action that may help mitigate resistance arising from single-target insecticides.
The synthesized compounds were screened for acute toxicity in larval bioassays alongside the reference insecticide chlorpyrifos. To rationalize their biological activity and explore potential mechanisms of action, an integrated computational approach was employed, incorporating molecular docking, molecular dynamics simulations, and ADME predictions. The selected molecular targets, acetylcholinesterase (AChE) and methoprene-tolerant (Met) receptor, are key to insecticidal action. The heterocyclic rings in the synthesized compounds, including both five-membered and six-membered systems, contain polar and aromatic features commonly associated with bioactive insecticidal scaffolds. Rather than implying direct scaffold similarity to reported co-crystallized ligands, the present docking strategy focused on evaluating whether the designed molecules can geometrically accommodate the same binding cavities and engage conserved catalytic or hormone-binding residues within the active sites. Such spatial compatibility and interaction patterns, even in the absence of structural resemblance, may indicate the feasibility of target recognition at both neural (AChE) and endocrine (Met) levels.
This combined experimental and computational approach provides a mechanistic framework for understanding the observed larvicidal activities and highlights the potential of 2(3H)-furanone-derived heterocycles as multitarget insecticidal candidates capable of simultaneously modulating neural and endocrine pathways. Such an approach could contribute to the advance of next-generation insecticides with enhanced selectivity, reduced resistance risk, and enhanced sustainability in mosquito vector control. It should be emphasized that the present investigation represents an initial exploratory stage primarily focused on identifying the most promising molecular scaffolds through an integrated in silico and bioassay evaluation. This early-stage screening enables the rational selection of one or two potent candidates for subsequent mechanistic, environmental, and toxicological assessments. Among the synthesized derivatives, compound 4 demonstrated the highest larvicidal potency against Culex pipiens, highlighting the potential of this scaffold for further development. Accordingly, comprehensive toxicity studies on non-target organisms will be conducted in future stages once the most active and selective compounds have been prioritized, ensuring that experimental efforts are directed toward the most viable leads. Compared with previously reported heterocyclic insecticidal candidates, the present study introduces new furanone-derived scaffolds and combines experimental larvicidal evaluation with integrated molecular docking and dynamics analyses to explore their potential mechanisms of action, which may support future research toward the development of improved mosquito control agents.
O absorption disappeared while the amide NH and C
O absorption bands appeared. Also, its 1H NMR spectrum indicated a singlet signal in a downfield region related to amide NH proton, in addition to four singlet signals at δ 7.11, 6.80, 3.83, 2.35 ppm corresponding to olefinic (CH
), C4–H pyrrole, OCH3, and CH3 (tolyl) protons, respectively. Also, its 13C NMR spectrum strongly reinforced the assigned structure.
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| Scheme 1 Synthesis of 1,3-dihydro-2H-pyrrol-2-one derivatives 2, 4, 5, and N-benzylamide 3 from 2(3H)-furanone 1. | ||
Reacting furanone 1 with benzylamine in refluxing ethanol for 6 h furnished N-benzylamide 3 as a sole product, through initial nucleophilic attack of primary amino group of benzylamine on the lactone-carbonyl carbon to affect ring opening. Its IR spectrum showed absorption bands for NH and C
O groups of ketonic and amide. Also, its 1H NMR spectrum presented a broad singlet signal for NH proton and singlet signals for –COCH2– protons. Noteworthy, two doublet signals appeared for the magnetically non-equivalent protons of benzyl-methylene group (one of them was next to carbonyl oxygen and the other was next to phenyl moiety), with appropriate J coupling constant, that supported the open-structure.
In turn, treating the furanone 1 with 4-methoxyaniline in refluxing ethanol for a longer time (12 h) produced 1,3-dihydro-2H-pyrrol-2-one derivative 4, through initial lactone ring opening by primary amino group of 4-methoxyaniline followed by 5-exo-trig intramolecular ring closure. The 1H NMR spectrum of 1,3-dihydro-2H-pyrrol-2-one derivative 4 displayed its being as a mixture of E- and Z-stereoisomers, possibly occurred in situ, in a proportion of 78
:
22%, respectively. Presumably, the preferred E-configuration was inferred from the steric hindrance between anisyl ring and carbonyl group in the counter Z-form. This was also suggested from the study of space models and MM2 calculations11,47 (cf. Table S1) which revealed the more thermodynamic stability of E-isomer (total E = 60.75 kcal mol−1) than the counter Z-form (total E = 66.03 kcal mol−1) with different 1,4-van-der Waals (VDW) interactions.
On the other hand, reaction of the furanone 1 with methyl 4-aminobenzoate in refluxing ethanol remains unchanged for long time. So, the reaction condition was changed to fusion of the furanone 1 with that reagent in an oil bath at 150–160 °C for 4 h, which afforded the 1,3-dihydro-2H-pyrrol-2-one derivative 5 (cf. Scheme 1). The IR spectra of 1,3-dihydro-2H-pyrrol-2-ones 4 and 5 lacked lactone absorptions. In turn, 1H NMR spectrum of 1,3-dihydro-2H-pyrrol-2-one derivative 5 afforded singlet signal at δ 3.84 ppm, integrated for six protons corresponding to two methoxy sets.
On the other hand, benzoxazinone 7 was obtained upon treating furanone 1 with 2-aminobenzoic acid in neat conditions through the dehydration of the non-isolable intermediate 6 (Scheme 2). Spectroscopically, its IR spectrum offered carbonyl absorption bands related to lactone and ketone carbonyl groups. It 1H NMR spectrum revealed its presence as a mixture of Z- and E-isomers in a proportion of 78
:
22%, respectively, which may be attributed to the absence of repulsion between two benzene rings in Z-configuration. The preferred Z-configuration was also proven from the study of space models and MM2 calculations11,47 (cf. Table S1), which revealed the more thermodynamic stability of Z-isomer (total E = 47.31 kcal mol−1) than the counter E-form (total E = 1092.68 kcal mol−1).
![]() | ||
| Scheme 2 Synthesis of benzoxazinone 7 and its reactions with ammonium acetate and hydrazine hydrate. | ||
Refluxing of benzoxazinone 7 with ammonium acetate in ethanol produced quinazolinone 8 (Scheme 2). Its IR spectrum revealed absorption bands for amide NH and C
O, in addition to ketonic carbonyl group. Its 1H NMR spectrum displayed singlet signal in the downfield region related to NH proton, along with a singlet signal integrated to two protons corresponding to methylene protons and it was found as Z- and E-isomers in a proportion of 66
:
33%, respectively, with conserved the preferred Z-configuration (cf. Table S1). In contrast, hydrazinolysis of benzoxazinone 7 using hydrazine hydrate in refluxing ethanol produced pyridazinoquinazoline candidate 9 (cf. Scheme 2). Its IR spectrum exposed NH, C
O, and C
N absorption bands. The broad band of NH absorption was attributed to intramolecular hydrogen bond with the neighboring carbonyl group. Its 1H NMR spectrum revealed that E- and Z-isomers in a ratio of 60
:
40%, respectively, with preferred E-configuration (cf. Table S1). A probable pathway for this reaction was displayed in Scheme 3.
Aiming to obtain pyridazine derivatives, furanone 1 underwent hydrazinolysis reaction using hydrazine hydrate in ethanol at room temperature or under reflux to produce pyridazinone derivative 10 (ref. 48) (Scheme 4). Its IR spectrum lacked lactone carbonyl absorption and presented an absorption band for amide carbonyl group. Also, its 1H NMR spectrum offered a singlet signal for methylene protons (δ = 3.78 ppm), in addition to a singlet signal for NH proton in a downfield region (δ = 13.03 ppm). Presumably, this reaction was viewed via initial lactone ring opening by hydrazine (by attack of amino group on lactone carbonyl group) followed by 6-exo-trig intramolecular cyclization. Thiation of pyridazinone 10 using phosphorus pentasulfide in refluxing toluene offered thione derivative 11 (Scheme 4).
The carbonyl absorption disappeared in its IR spectrum, and thioxo absorption band was detected. Also, its 1H NMR spectrum revealed singlet signals for NHCS proton in a downfield region (δ = 14.85 ppm) and methylene protons at δ 4.09 ppm. Further, its 13C NMR showed signals for thioxo-carbon at δ 179.1 ppm and methylene carbon at δ 37.72 ppm. Chlorination of pyridazinone 10 using phosphorus oxychloride furnished 3-chloropyridazine derivative 12 (Scheme 4). Its IR spectrum exposed the absence of carbonyl absorption and showed band for C
N group at ν 1612 cm−1. Furthermore, its 1H NMR spectrum presented singlet signal for methylene protons at δ 4.06 ppm, affected by the anisotropic effect of pyridazine aromatic ring and the electron-withdrawing effect of chlorine atom.
On the other hand, treating furanone 1 with 2-aminoethanol upon stirring in 1,4-dioxane at ambient temperature offered the N-hydroxyethyl-1,3-dihydro-2H-pyrrol-2-one derivative 13 (Scheme 5). Carbonyl absorption band of pyrrolone ring appeared in its IR spectrum. Its 1H NMR spectrum was reliable with the proposed structure. Finally, treatment of furanone 1 with semicarbazide hydrochloride in refluxing ethanol and sodium acetate anhydrous led to the construction of pyridazinone 14 (Scheme 5). Spectroscopically, its IR spectrum was devoid of the lactone carbonyl absorption and showed absorption bands for carbonyl, NH, and NH2 groups. In consistency, its 1H NMR spectrum offered singlet signals for amide (NHCO, 70%) and isoamide (N
C–OH, 30%) protons at δ 8.55 and 5.83 ppm, respectively, as well as a singlet signal for NH2 protons at δ 6.13 ppm.
| Compound | LC50/µg mL−1 | χ2cal./tab.(7.8) | r2 | P value | Toxicity index |
|---|---|---|---|---|---|
| 1 | 458.6 | 7.70 | 0.93 | 0.000 | 0.021 |
| 2 | 379.2 | 7.60 | 0.91 | 0.000 | 0.026 |
| 3 | 362.6 | 7.40 | 0.92 | 0.000 | 0.027 |
| 4 | 0.1 | 0.01 | 0.2 | 0.900 | 100 |
| 5 | 84.7 | 3.60 | 0.82 | 0.200 | 0.118 |
| 7 | 94.8 | 4.40 | 0.82 | 0.200 | 0.100 |
| 8 | 66.3 | 5.30 | 0.83 | 0.100 | 0.150 |
| 9 | 34.1 | 1.70 | 0.88 | 0.600 | 0.290 |
| 10 | 83.4 | 3.60 | 0.83 | 0.300 | 0.119 |
| 11 | 93.8 | 7.00 | 0.82 | 0.020 | 0.100 |
| 12 | 127.7 | 6.90 | 0.81 | 0.004 | 0.078 |
| 13 | 343.9 | 6.60 | 0.94 | 0.005 | 0.029 |
| 14 | 85.3 | 6.00 | 0.87 | 0.100 | 0.117 |
| Chlorpyrifos | 420 | 5.20 | 0.96 | 0.300 | 0.023 |
For comparison, the reference insecticide chlorpyrifos exhibited an LC50 value of 420 µg mL−1 under the same bioassay conditions. Chlorpyrifos was included as a standardized toxicological benchmark widely used in WHO-guided larval bioassays to allow contextual evaluation of potency under identical experimental conditions, rather than as a chemotype-related structural comparator. Under these conditions, all compounds except compound 1 displayed higher toxicity, with compound 4 being markedly more active. The calculated toxicity indices, expressed relative to compound 4 (100%), ranged between 0.021 and 0.299 for the remaining derivatives, reflecting their lower relative potency within the series.
The regression analysis demonstrated generally high determination coefficients for most compounds (R2 = 0.82–0.96) together with acceptable χ2 values (≤7.8), supporting the statistical reliability of the dose–response data. An exception was compound 4, whose extremely low LC50 value produced a steeper dose–response slope and consequently a lower correlation coefficient, despite its clear biological potency. Overall, these findings indicate that the larvicidal activity of the tested heterocyclic derivatives is highly dependent on structural variation and that compound 4 represents the most promising lead for further investigation.
Homology models of Culex pipiens acetylcholinesterase (AChE) and the methoprene-tolerant (Met) receptor were successfully generated to provide accurate protein structures for docking simulations (Fig. 3 and 4). The AChE model was built using the Anopheles gambiae AChE crystal structure (PDB ID: 5X61, chain A) as a template, while the Met PAS-B domain was modeled using the human HIF-2α PAS-B domain (PDB ID: 6E3U, chain B) as a structural analogue owing to the conserved PAS-fold architecture among bHLH-PAS receptors. Both models showed high structural quality, as confirmed by their Ramachandran plots, in which more than 92% of residues occupied favored regions with no residues in disallowed areas. The QMEAN Z-scores (−0.47 for AChE and −0.62 for Met) and global QMEAN scores (∼0.7–0.8) indicated geometries consistent with experimentally determined structures, reflecting good stereochemical reliability.
To ensure biologically meaningful docking, the native co-crystal ligands from the template structures, BT7 (from PDB 6ARY) for AChE and HNJ (from PDB 6E3U) for Met, were transferred to the corresponding modeled cavities. These ligands defined the catalytic gorge of AChE and the hormone-binding pocket of Met with high spatial precision, allowing accurate grid generation and docking in the correct active sites. Collectively, the modeling and validation results confirm that the obtained protein structures are geometrically sound, energetically stable, and appropriately configured for subsequent docking and dynamic analyses.
| Compound | AChE | MET | ||
|---|---|---|---|---|
| S | RMSD | S | RMSD | |
| 1 | −6.01 | 1.16 | −6.70 | 0.87 |
| 2 | −5.85 | 1.23 | −6.65 | 1.26 |
| 3 | −8.06 | 1.40 | −8.74 | 1.27 |
| 4 | −7.38 | 1.02 | −5.06 | 1.04 |
| 5 | −8.08 | 1.59 | −6.51 | 1.18 |
| 7 | −7.34 | 1.64 | −8.06 | 1.46 |
| 8 | −7.38 | 1.25 | −7.16 | 1.40 |
| 9 | −6.97 | 1.55 | −7.05 | 1.91 |
| 10 | −5.18 | 1.94 | −6.82 | 0.83 |
| 11 | −7.15 | 1.52 | −6.34 | 1.42 |
| 12 | −7.09 | 1.02 | −6.46 | 1.49 |
| 13 | −6.42 | 0.78 | −5.44 | 0.99 |
| 14 | −4.45 | 0.94 | −5.98 | 1.59 |
| Chlorpyrifos | −6.72 | 1.94 | — | — |
| Redocked CCL (AChE) | −6.31 | 0.65 | — | — |
| Pyriproxyfen | — | — | −7.36 | 1.54 |
| Redocked CCL (MET) | — | — | −5.90 | 1.40 |
All selected docking poses for the synthesized compounds exhibited RMSD values below 2.0 Å, indicating stable and well-converged conformations. The reference insecticide chlorpyrifos yielded a docking score of −6.72 kcal mol−1, forming hydrogen bonds with HIS567, GLY247, and SER327, together with a π–H interaction involving TRP212. These residues belong to the catalytic triad and peripheral aromatic gorge, consistent with its established inhibitory behavior.
The synthesized derivatives displayed docking scores ranging from −5.18 to −8.08 kcal mol−1. Several ligands showed recurrent engagement of HIS567 and TRP212, with frequent π–π or π–H interactions anchoring the heteroaromatic systems within the aromatic gorge. Compound 4, the most potent derivative in the biological assay, achieved a docking score of −7.38 kcal mol−1 and adopted a stable pose (RMSD = 1.02 Å), exhibiting spatial overlap within the catalytic gorge similar to that observed for the reference ligands at HIS567 and TRP212 (Fig. 5). Although none of the synthesized ligands simultaneously engaged all members of the catalytic triad, the observed interaction patterns confirm that they can be accommodated within the AChE active gorge. Docking scores were not interpreted as quantitative predictors of larvicidal potency. Rather, the docking analysis was used to assess structural accommodation and conserved residue engagement within the catalytic pocket.6–8,49–51
Docking simulations were similarly conducted on the homology-modeled PAS-B domain of the Culex pipiens Met receptor. The co-crystallized ligand HNJ (PDB ID: 6E3U) was superposed to define the ligand-binding cavity prior to docking. Redocking reproduced its orientation with an RMSD of 1.40 Å and a docking score of −5.90 kcal mol−1. Although no strong interactions were reported in the native crystal structure, the redocked pose established hydrogen bonds with MET56 and HIS23, supporting correct cavity definition.
All synthesized compounds exhibited RMSD values below 2.0 Å within the PAS-B domain, indicating stable binding poses. The reference juvenile hormone analog pyriproxyfen yielded a docking score of −7.36 kcal mol−1, forming hydrophobic and π–H contacts with LEU68 and HIS23, consistent with its reported orientation within the hormone-binding cavity. The synthesized ligands displayed docking scores ranging from −5.06 to −8.74 kcal mol−1. Hydrogen bonding with HIS23 represented the most recurrent interaction across the series, often accompanied by contacts involving MET56, CYS115, or THR21 within the PAS-B cavity. Compound 4 exhibited a docking score of −5.06 kcal mol−1 and an RMSD of 1.04 Å, forming a hydrogen bond with HIS23 and showing partial spatial overlap with both HNJ and pyriproxyfen (Fig. 6). Although its docking energy was less favorable than that of pyriproxyfen or compound 3, it maintained a stable and well-converged orientation within the hormone-binding pocket.
Collectively, the docking findings indicate that the synthesized ligands can be accommodated within both the AChE catalytic gorge and the Met PAS-B cavity, reproducing selected interactions with conserved residues such as HIS567 and HIS23. The computational analysis is therefore presented as structural, hypothesis-generating evidence supporting the geometric feasibility of dual-site engagement, without implying direct proportionality between docking energy and biological potency.
Root Mean Square Deviation (RMSD) and Root Mean Square Fluctuation (RMSF) profiles were computed over a 100 ns simulation to evaluate the overall system stability and local residue flexibility. For AChE, the RMSD plots (Fig. 7a–f) indicated that compound 4 maintained stable binding within the active pocket with minimal fluctuations, comparable to the reference insecticide chlorpyrifos and the redocked co-crystallized ligand (BT7). The RMSF curves also confirmed that the residues surrounding the catalytic gorge remained stable throughout the simulation, suggesting that no major conformational rearrangements occurred upon ligand binding.
Similarly, for the methoprene-tolerant (Met) receptor (Fig. S1a–f), compound 4 exhibited a consistent RMSD trajectory, aligning closely with the reference juvenile-hormone analog pyriproxyfen and the re-docked native ligand (HNJ). Local residue fluctuations (RMSF) were limited to flexible loop regions, while the key binding residues displayed minimal deviation, confirming stable accommodation of the ligand within the PAS-B domain pocket.
Protein–ligand contact histograms (Fig. 8 and S2) provided insight into the persistence and nature of the interactions. For both targets, compound 4 maintained several hydrogen bonds and hydrophobic contacts with residues previously identified from the docking analysis, confirming the reliability of the docking predictions. Notably, in AChE, the interactions involving catalytic residues (such as HIS567, TRP212, and TRP559) persisted for most of the simulation time, whereas in the Met receptor, compound 4 preserved strong hydrophobic and hydrogen-bond interactions within the hormone-binding cavity. In comparison, the reference insecticides exhibited similar but sometimes less persistent contact frequencies, and the co-crystallized ligands followed expected binding behavior, serving as internal validation controls.
The MD trajectories corroborate the docking results, demonstrating that compound 4 forms stable and persistent interactions within both AChE and Met active pockets. The consistency between docking and MD findings supports the internal coherence of the computational workflow and indicates that the designed molecules can maintain stable interactions within the modeled systems under simulated physiological conditions.
Although docking and MD analyses provide strong predictive evidence, further biochemical assays on enzyme inhibition and hormonal pathway disruption are necessary to confirm the proposed mechanisms of action. Additional studies such as enzyme inhibition assays, gene expression analysis of hormonal pathways, and extended toxicity evaluations may further clarify the biological mechanisms underlying the observed larvicidal activity. Together, these in silico insights suggest that the studied compounds may exert their larvicidal effects primarily through AChE inhibition and/or juvenile-hormone mimicry, consistent with the observed mortality patterns in bioassay results. Hence, molecular dynamics not only strengthened the docking conclusions but also underscored the practical value of combining these computational methods as efficient screening tools that reduce experimental workload by focusing on the most promising candidates for future validation.
P = 4.49), achieved strong docking scores but did not translate this into comparable biological activity, possibly due to altered conformational behavior or distribution properties in the larval system.
In contrast, compound 4 exhibits a balanced physicochemical profile (Log
P = 4.36; TPSA = 38.77 Å2) combined with the absence of predicted efflux liability and preserved interaction geometry within both targets. This combination of moderate rigidity, controlled polarity, and adequate lipophilicity may facilitate efficient penetration through larval barriers and sustained target engagement. Therefore, its superior potency likely reflects an optimized interplay between structural compatibility and physicochemical accessibility rather than maximal docking affinity alone.49,51
The docking analyses nonetheless indicate that compound 4 maintains relevant stabilizing interactions with residues critical for target recognition, HIS567 and TRP212 in AChE, and HIS23 in Met, supporting the likelihood of simultaneous engagement of both neurotoxic and hormonal pathways. The combination of an electronically balanced aromatic scaffold and favorable physicochemical parameters may therefore facilitate dual-site compatibility, even without exceptionally strong docking energies, helping to rationalize its overall biological performance.
Compounds 5, 7, 8, 9, 10, and 11, which exhibited moderate larvicidal activity (LC50 = 34–95 µg mL−1), shared comparable docking energies but displayed variations in substituent polarity and spatial orientation. These structural differences may have reduced their overall bioavailability or target accessibility despite satisfactory binding scores. For instance, compound 5 showed a strong docking score in AChE (−8.08 kcal mol−1) yet produced lower larvicidal activity, suggesting that binding affinity alone is not the sole determinant of biological efficacy. Such discrepancies can arise from differences in lipophilicity (log
P), molecular size, or hydrogen-bonding capacity, all of which affect the ability of the compound to penetrate larval cuticle barriers and reach internal target sites.
In contrast, compounds 1, 2, 3, and 13 exhibited weak activity (LC50 > 340 µg mL−1) despite reasonable docking scores. Their reduced efficacy may stem from unfavorable pharmacokinetic characteristics, such as excessive polarity or steric bulk, limiting their diffusion through the larval membrane or their stability in the aquatic medium. These observations emphasize that a high docking score does not necessarily correlate with strong biological activity when physicochemical factors restrict compound-target encounters.
Conversely, certain compounds (e.g., 3 and 5) showed stronger binding energies than compound 4 but lower in vivo potency, indicating that their active conformations, although energetically favorable in silico, may not be accessible under physiological conditions due to rigidity, solubility constraints, or metabolic instability. Therefore, while docking and MD simulations provide valuable insights into potential target engagement, the overall larvicidal outcome reflects a complex interplay between molecular recognition, physicochemical behavior, and biological transport processes.
Taken together, the SAR findings suggest that the presence of electron-donating heteroatoms (N, O, S) within a moderately rigid aromatic framework enhances the dual-target potential of these furanone-derived heterocycles. Subtle changes in polarity or substituent positioning can drastically shift the biological outcome by modulating both target affinity and physicochemical accessibility. This highlights the importance of optimizing molecular balance between hydrophobicity and polarity to achieve both efficient penetration and stable binding. Future structure refinement of compound 4 and its analogues could therefore focus on maintaining its favorable interaction profile while improving aqueous stability and metabolic persistence to yield more effective, broad-spectrum larvicidal candidates. These observations also suggest that maintaining a balanced combination of aromatic scaffolds, heteroatom-containing functionalities, and moderate lipophilicity may represent useful structural considerations for the design of future insecticidal agents.
All synthesized compounds exhibited molecular weights and topological polar surface areas (TPSA) within the optimal range for passive membrane diffusion, together with moderate lipophilicity (Log
P ≈ 2.9–4.5), supporting a balanced hydrophilic–lipophilic character (Table 3). The uniformly high gastrointestinal (GI) absorption predicted for the series indicates good potential for penetration through the insect gut or cuticular membranes, an essential prerequisite for bioavailability in larval systems.
| Compound | Molecular weight (g mol−1) | TPSA (Å2) | Log P (iLOGP) |
GI absorption | BBB permeability | P-gp substrate | Bioavailability score |
|---|---|---|---|---|---|---|---|
| 1 | 292.33 | 35.53 | 3.36 | High | Yes | No | 0.55 |
| 2 | 291.34 | 38.33 | 3.20 | High | Yes | No | 0.55 |
| 3 | 399.48 | 55.40 | 3.50 | High | Yes | Yes | 0.55 |
| 4 | 397.47 | 38.77 | 4.36 | High | Yes | No | 0.55 |
| 5 | 425.48 | 55.84 | 4.49 | High | Yes | No | 0.55 |
| 7 | 411.45 | 69.40 | 3.45 | High | No | No | 0.55 |
| 8 | 410.46 | 72.05 | 3.33 | High | No | No | 0.55 |
| 9 | 407.46 | 59.39 | 4.16 | High | Yes | No | 0.55 |
| 10 | 306.36 | 54.98 | 2.99 | High | Yes | No | 0.55 |
| 11 | 322.42 | 70.00 | 3.21 | High | Yes | No | 0.55 |
| 12 | 324.81 | 56.15 | 3.54 | High | Yes | No | 0.55 |
| 13 | 335.40 | 62.09 | 3.45 | High | Yes | No | 0.55 |
| 14 | 349.39 | 72.65 | 2.88 | High | No | No | 0.55 |
Minor pharmacokinetic differences were nonetheless observed. Most compounds were predicted to cross the blood–brain barrier (BBB), consistent with possible access to neural targets such as AChE, whereas compounds 7, 8, and 14 were non-BBB-permeant, suggesting that their activity could be mediated primarily through peripheral or endocrine routes rather than direct neurotoxicity. Furthermore, only compound 3 was identified as a P-glycoprotein (P-gp) substrate, implying a higher likelihood of efflux and reduced intracellular retention relative to the rest of the series (Fig. 9).
The identical bioavailability score (0.55) across all derivatives reflects a consistent physicochemical design with generally favorable absorption and distribution potential (Table 3). Taken together, these data indicate that while no compound exhibits a pronounced pharmacokinetic advantage, subtle differences in BBB permeability, polarity, and efflux susceptibility may help explain part of the mismatch between docking affinities and larvicidal potencies (Fig. 9). Hence, the overall biological performance likely results from the combined effects of molecular recognition, membrane transport, and physicochemical stability rather than binding affinity alone.
Although these computational pharmacokinetic results complement the docking and bioassay findings, experimental validation at the enzyme and tissue levels remain essential to confirm actual absorption and target engagement. Nonetheless, the in silico screening provides a useful, resource-efficient framework for prioritizing insecticidal candidates with balanced permeability and stability profiles for future optimization.
The ADME predictions confirmed favorable absorption and lipophilicity across the series, with minor differences, particularly in BBB permeability and efflux potential, likely contributing to variations in observed activity. Taken together, the integration of bioassay data, molecular modeling, dynamics simulation, and pharmacokinetic profiling provides a coherent mechanistic framework that links structural features with biological performance. The results suggest that 1,3-dihydro-2H-pyrrol-2-one-based candidates may represent promising scaffolds for further optimization toward efficient and selective larvicidal agents, with possible interaction across neurotoxic and hormonal targets, providing a basis for future research aimed at developing improved mosquito control agents.
O pyrrolone). 1H NMR (300 MHz, DMSO-d6, δ, ppm): 10.40 (br.s, 1H, NH, exchangeable), 7.79–7.74 (m, 4H, Ar–H), 7.27 (d, 2H, Ar–H, J = 8.1 Hz), 7.11 (s, 1H, CH
), 7.03 (d, 2H, Ar–H, J = 8.7 Hz), 6.80 (s, 1H, C4–H pyrrole), 3.83 (s, 3H, OCH3), 2.35 (s, 3H, CH3). 13C NMR (75 MHz, DMSO-d6, δ, ppm): 171.3, 160.5, 144.8, 139.5, 132.4, 129.6 (2), 128.9, 128.3 (2), 127.1, 125.4, 121.0, 120.9, 114.8 (2), 96.8, 55.6, 21.2. Anal. calcd for C19H17NO2 (291.35): C, 78.33; H, 5.88; N, 4.81%; found: C, 78.29; H, 5.80; N, 4.87%.
O ketone), 1636 (C
O amide). 1H NMR (300 MHz, DMSO-d6, δ, ppm): 7.85 (br.s, 1H, NH), 7.46–6.97 (m, 14H, Ar–H + CH
), 4.32 (d, 1H, 1H of N–CH2, J = 14.7 Hz), 4.04 (d, 1H, 1H of N–CH2, J = 15.0 Hz), 3.76 (s, 3H, OCH3), 3.40 (s, 2H, CH2CO), 2.34 (s, 3H, CH3). EI-MS (70 eV, m/z, %): 399.24 (M+, 48), 344.50 (77), 266.77 (95), 175.15 (100), 148.67 (66), 112.76 (26), 84.82 (36). Anal. calcd for C26H25NO3 (399.49): C, 78.17; H, 6.31; N, 3.51; found: C, 78.02; H, 6.25; N, 3.54%.
O pyrrolone). 1H NMR (300 MHz, DMSO-d6, δ, ppm): (E- & Z-isomers, 78
:
22%): 7.84 & 7.51 (d, 2H, Ar–H, J = 8.1 & 9 Hz), 7.36 & 7.31 (s, 1H, CH
), 7.30–7.18 (m, 5H, Ar–H + C4–H pyrrolone), 7.15 & 7.06 (d, 2H, Ar–H, J = 8.7 & 8.1 Hz), 6.99 & 6.77 (d, 2H, Ar–H, J = 8.7 & 9 Hz), 6.63 & 6.50 (d, 2H, Ar–H, J = 6.6 Hz), 3.78 & 3.72 (s, 3H, OCH3), 3.67 & 3.61 (s, 3H, OCH3), 2.36 & 2.22 (s, 3H, CH3). Anal. calcd for C26H23NO3 (397.47): C, 78.57; H, 5.83; N, 3.52%; found: C, 78.63; H, 5.88; N, 3.55%.
O). 1H NMR (300 MHz, DMSO-d6, δ, ppm): 7.93 (d, 2H, Ar–H, J = 8.4 Hz), 7.86 (d, 2H, Ar–H, J = 8.4 Hz), 7.36 (s, 1H, CH
), 7.23 (d, 2H, Ar–H, J = 8.4 Hz), 7.18–7.11 (m, 4H, Ar–H), 7.05 (d, 2H, Ar–H, J = 8.7 Hz), 6.82 (s, 1H, C4–H pyrrole), 3.84 (s, 6H, 2 –OCH3), 2.27 (s, 3H, CH3). 13C NMR (100 MHz, DMSO-d6): 166.2, 161.4, 139.4, 133.2 (2), 130.1 (2), 129.5 (2), 128.2, 127.9 (2), 127.5, 126.7, 115.2 (2), 103.1, 63.5, 55.9, 52.7, 21.3. EI-MS (70 eV, m/z, %): 425.20 (M+, 18), 327.41 (39), 277.44 (37), 239.47 (41), 190.42 (47), 164.09 (75), 84.48 (62), 70.82 (58), 44.85 (100). Anal. calcd for C27H23NO4 (425.48): C, 76.22; H, 5.45; N, 3.29%; found: C, 76.29; H, 5.50; N, 3.20%.
O oxazinone), 1702 (C
O ketone), 1648 (C
N). 1H NMR (300 MHz, DMSO-d6, δ, ppm): (Z- & E-isomers, 78
:
22%): 8.16 (d, 1H, Ar–H, J = 8.1 Hz), 7.89–7.75 (m, 3H, Ar–H), 7.60–7.53 (m, 3H, Ar–H + CH
), 7.34–7.04 (m, 4H, Ar–H), 7.0 (d, 2H, Ar–H, J = 8.7 Hz), 3.79 & 3.85 (s, 3H, OCH3), 3.44 & 3.17 (s, 2H, CH2), 2.20 & 2.37 (s, 3H, CH3). 13C NMR (75 MHz, DMSO-d6, δ, ppm): 166.6, 161.6, 160.7, 138.9, 137.8, 137.0, 136.1, 134.4, 132.4, 129.8 (2), 128.9, 128.4, 126.8 (2), 124.9 (2), 122.9, 121.4, 117.0, 114.9, 114.60 (2), 94.6, 55.4, 41.7, 20.6. EI-MS (70 eV, m/z, %): 411.46 (M+, 40), 410.29 (44), 373.41 (97), 312.86 (77), 285.11 (100), 253.97 (99), 175.45 (62), 105.04 (89), 91.12 (94). Anal. calcd for C26H21NO4 (411.46): C, 75.90; H, 5.14; N, 3.40%; found: C, 75.85; H, 5.19; N, 3.46%.
:
1) to produce green crystals, mp 220–222 °C, yield 75%. IR (KBr, ν, cm−1): 3286 (NH), 2954, 2933 (CH aliphatic), 1679 (C
O ketone), 1641 (C
O amide), 1607 (C
N). 1H NMR (300 MHz, DMSO-d6, δ, ppm): (Z- & E-isomers, 66
:
33%): 10.41 (br.s, 1H, NH, exchangeable), 7.83–7.74 (m, 2H, Ar–H), 7.57 & 7.40 (s, 1H, CH
), 7.27–6.67 (m, 10H, Ar–H), 3.82 & 3.78 (s, 3H, OCH3), 3.50 & 3.45 (s, 2H, CH2), 2.33 & 2.23 (s, 3H, CH3). 13C NMR (75 MHz, DMSO-d6 δ, ppm): (Z- and E-isomers, 66
:
33%): 171.3, 169.2, 166.9, 160.8, 160.5, 147.4, 144.8, 139.4, 138.8, 137.8, 136.5, 135.3, 133.9, 133.7, 132.4, 131.6, 130.3 (2), 130.0, 129.7, 129.5, 129.1, 128.9, 128.3 (2), 128.0 (2), 127.8, 127.6, 127.1, 126.7, 125.6, 124.7, 114.8, 114.6 (2), 114.0, 75.0, 55.5, 29.1, 21.1. Anal. calcd for C26H22N2O3 (410.47): C, 76.08; H, 5.40; N, 6.82%. found: C, 76.18; H, 5.50; N, 6.78%.
O), 1611 (C
N). 1H NMR (300 MHz, DMSO-d6, δ, ppm): (E- & Z-isomers, 60
:
40%): 12.85 (br.s, 1H, NH), 8.18 (d, 1H, Ar–H, J = 7.8 Hz), 7.88–7.79 (m, 3H, Ar–H), 7.61–7.27 (m, 6H, Ar–H + CH
), 7.09–6.98 (m, 3H, Ar–H), 6.74 (s, 1H, C4–H pyridazine), 3.83 & 3.79 (s, 3H, OCH3), 2.18 (s, 3H, CH3). 13C NMR (75 MHz, DMSO-d6, δ, ppm): 168.9, 166.8, 161.3, 160.7, 147.1, 140.6, 136.9, 135.2, 134.3, 132.4, 132.2, 130.5, 129.8 (2), 128.9 (2), 127.7 (2), 126.9, 126.7, 125.9, 124.9, 122.7, 121.3, 116.9, 114.6 (2), 101.2, 94.4, 55.3, 41.5. EI-MS (70 eV, m/z, %): 407.90 (M+, 23), 376.16 (83), 257.94 (46), 227.25 (86), 202.19 (100), 160.39 (69), 110.75 (75), 80.15 (87), 76.86 (97). Anal. calcd for C26H21N3O2 (407.47): C, 76.64; H, 5.19; N, 10.31; found: C, 76.50; H, 5.11; N, 10.26%.
O), 1605 (C
N). 1H NMR (300 MHz, DMSO-d6, δ, ppm): 13.03 (s, 1H, NH, exchangeable), 7.78 (s, 1H, C5–H pyridazine), 7.68 (d, 2H, Ar–H, J = 8.1 Hz), 7.29–6.25 (m, 4H, Ar–H), 6.86 (d, 2H, Ar–H, J = 9 Hz), 3.78 (s, 2H, CH2), 3.71 (s, 3H, OCH3), 2.34 (s, 3H, CH3). Anal. calcd for C19H18N2O2 (306.36): C, 74.49; H, 5.92; N, 9.14%; found: C, 74.55; H, 5.86; N, 9.11%.
N), 1247 (C
S). 1H NMR (300 MHz, DMSO-d6, δ, ppm): 14.85 (br.s, 1H, NH), 7.81–7.70 (m, 3H, Ar–H + C5–H pyridazine), 7.32–7.21 (m, 4H, Ar–H), 6.86 (d, 2H, Ar–H, J = 8.4 Hz), 4.09 (s, 2H, CH2), 3.71 (s, 3H, OCH3), 2.33 (s, 3H, CH3). 13C NMR (75 MHz, DMSO-d6, δ, ppm): 179.1, 157.9, 152.0, 149.4, 139.9, 131.2, 130.3 (2), 129.7 (2), 129.6 (2), 125.9, 123.0, 113.8 (2), 55.0, 37.7, 20.9. Anal. calcd for C19H18N2OS (322.43): C, 70.78; H, 5.63; N, 8.69%. found: C, 70.72; H, 5.67; N, 8.61%.
:
1) to give grey crystals, mp 210–212 °C, yield 45%. IR (KBr, ν, cm−1): 3036, 3006 (CH arom.), 2926, 2908 (CH aliph.), 1612 (C
N). 1H NMR (300 MHz, DMSO-d6, δ, ppm): 8.18 (s, 1H, C5–H pyridazine), 7.99 (d, 2H, Ar–H, J = 8.1 Hz), 7.35 (d, 2H, Ar–H, J = 8.1 Hz), 7.23 (d, 2H, Ar–H, J = 8.4 Hz), 6.88 (d, 2H, Ar–H, J = 8.7 Hz), 4.06 (s, 2H, CH2), 3.71 (s, 3H, OCH3), 2.37 (s, 3H, CH3). 13C NMR (75 MHz, DMSO-d6, δ, ppm): 164.8, 158.4, 155.8, 144.4, 138.4, 132.8, 130.1 (2), 129.8 (2), 128.4 (2), 126.8, 124.3, 123.1, 114.1 (2), 55.1, 36.7, 21.0. Anal. calcd for C19H17ClN2O (324.81): C, 70.26; H, 5.28; N, 8.62%; found: C, 70.32; H, 5.35; N, 8.52%.
O). 1H NMR (300 MHz, DMSO-d6, δ, ppm): 7.75 (d, 2H, Ar–H, J = 8.7 Hz), 7.54 (d, 2H, Ar–H, J = 7.8 Hz), 7.31 (d, 2H, Ar–H, J = 7.8 Hz), 7.22 (s, 1H, CH
), 7.01 (d, 2H, Ar–H, J = 8.7 Hz), 6.34 (s, 1H, C4–H pyrrolone), 3.81 (s, 4H, OCH3 + OH), 3.67–3.63 (m, 4H, 2 CH2), 2.37 (s, 3H, CH3). Anal. calcd for C21H21NO3 (335.40): C, 75.20; H, 6.31; N, 4.18%. found: C, 75.02; H, 6.25; N, 4.30%.
O). 1H NMR (300 MHz, DMSO-d6, δ, ppm): 8.55 (br.s, 1H, NHCO, lactam form, 70%), 7.80 (d, 2H, Ar–H, J = 8.7 Hz), 7.60 (d, 2H, Ar–H, J = 7.8 Hz), 7.25 (d, 2H, Ar–H, J = 7.7 Hz), 7.24 (s, 1H, CH
), 7.03 (d, 2H, Ar–H, J = 8.4 Hz), 6.56 (s, 1H, C5–H pyridazine), 6.13 (br.s, 2H, NH2), 5.83 (br.s, 1H, OH lactim form, 30%), 3.83 (s, 3H, OCH3), 2.35 (s, 3H, CH3). 13C NMR (100 MHz, DMSO-d6): 170.0, 161.1, 139.6, 132.9 (2), 131.8, 129.5 (2), 128.3, 127.8 (2), 127.4, 125.5, 115.2 (2), 55.8, 21.4. EI-MS (70 eV, m/z, %): 349.87 (M+, 24), 284.25 (32), 256.01 (81), 222.91 (67), 166.42 (29), 130.21 (50), 120.08 (57), 102.89 (47), 91.95 (52), 77.17 (100). Anal. calcd for C20H19N3O3 (349.39): C, 68.75; H, 5.48; N, 12.03; found: C, 68.64; H, 5.42; N, 12.00%.
Larval toxicity tests were performed following the standard procedures outlined by the World Health Organization.54 Third-instar Culex pipiens larvae (20 individuals per replicate) were subjected to a gradient of test concentrations 250, 500, 1000, 1500, and 2000 µg mL−1, to determine the larvicidal potency of each compound. Stock solutions were prepared in dimethylformamide (DMF) and subsequently diluted with distilled water to achieve the desired concentrations. For each treatment, three independent replicates were conducted alongside a solvent control containing only DMF and water. After 24 h of exposure, larval mortality was recorded, with death confirmed by the lack of movement upon gentle stimulation.6–8,25,49–51,53,55
The recorded larval mortality data were analyzed statistically using the LDP Line software. Median lethal concentrations (LC50) and their corresponding 95% confidence limits were estimated to quantify larvicidal potency. Mortality observed in control groups was adjusted through Abbott's correction formula. The reliability and precision of the fitted probit regression lines were verified using Finney's statistical approach, the chi-square goodness-of-fit test, and the coefficient of determination (r2).56,57 In addition, the relative toxicity (toxicity index, TI) of each tested compound was computed following the equation proposed by Sun and colleagues.58
Because no crystallographic structures are available for Culex pipiens AChE or Met, homology models of both proteins were generated. The amino acid sequences were retrieved from UniProt under accession numbers Q86GC8 (AChE) and Q4ZH01 (Met). For AChE, the model was built using PDB 5X61 (chain A) as a template, while for Met, the PAS-B domain was modeled based on PDB 6E3U (chain B) containing the co-crystallized ligand HNJ.
To ensure accurate definition of the binding cavities, the reference ligands BT7 (from PDB 6ARY) and HNJ (from PDB 6E3U) were transferred into the respective Culex models by structural superposition and alignment with their template proteins. This procedure preserved the biologically relevant orientation of the ligands and allowed precise mapping of the active and hormonal binding sites for subsequent docking. The accuracy of each docking protocol was further validated by redocking the transferred ligands into their corresponding binding sites, confirming that the reproduced poses closely matched the experimental orientations (RMSD < 2.0 Å), thereby demonstrating proper grid definition and parameter calibration.
Docking simulations were carried out for all synthesized compounds, along with the co-crystallized ligands and the benchmark insecticides chlorpyrifos (AChE reference) and pyriproxyfen (Met reference), using the Molecular Operating Environment (MOE 2024.06) software. Protein structures were prepared by adding polar hydrogens, assigning Gasteiger charges, and performing energy minimization to optimize the geometry of the active sites. For each target, a total of 100 docking poses were generated per ligand, and the best-ranked conformations were selected based on multiple criteria, including the lowest binding energy, an RMSD ≤ 2.0 Å, and consistent alignment of key interacting residues with those of the co-crystallized and reference ligands. The binding interactions were then analyzed to identify the most relevant amino acid residues involved in hydrogen bonding, hydrophobic contacts, and π–π stacking within the defined active-site pocket.6–8,25,49–53,59
To validate the molecular docking outcomes and explore the conformational stability of the ligand–protein assemblies over time, molecular dynamics (MD) simulations were conducted using the Desmond package integrated within the Schrödinger Suite (Schrödinger, LLC, New York, NY, USA). Four representative complexes were selected for simulation: the most active compound (compound 4), the co-crystallized ligands of AChE and Met, and the benchmark insecticides chlorpyrifos and pyriproxyfen. Each molecular system was immersed in an explicit TIP3P water model confined within an orthorhombic box extending 10 Å beyond the solute in all directions. The systems were neutralized by adding appropriate numbers of Na+ and Cl− ions and adjusted to a physiological salt concentration of 0.15 M NaCl.
All simulations employed the OPLS4 force field and periodic boundary conditions. Prior to production, the solvated complexes were energy-minimized through 2000 iterations of steepest descent followed by conjugate-gradient refinement. The equilibrated configurations were then propagated for 100 ns under an NPT ensemble at 300 K and 1 atm, controlled by the Nose–Hoover chain thermostat and Martyna–Tobias–Klein barostat algorithms. Long-range electrostatic interactions were computed using the Particle-Mesh Ewald (PME) approach with a 9.0 Å cutoff for short-range forces. To maintain bond rigidity involving hydrogen atoms, the SHAKE constraint was applied, enabling a stable integration time step of 2 fs.6,7,49,52
Trajectory analyses were performed using the Simulation Interaction Diagram (SID) module implemented in Desmond to investigate the temporal behavior and structural integrity of each complex. The Root Mean Square Deviation (RMSD) profile was employed to track overall conformational stability, whereas Root Mean Square Fluctuation (RMSF) values characterized the mobility of individual amino acid residues, particularly those located in the binding cavity. To further examine the interaction dynamics, contact histograms and frequency plots were generated, illustrating the persistence of hydrogen bonds, hydrophobic interactions, and π–π stacking events throughout the 100 ns simulation period.
Complementary parameters, including the radius of gyration (Rg), solvent-accessible surface area (SASA), and total potential energy, were also monitored to provide a comprehensive assessment of system equilibration and compactness (File S2). Comparative trajectory profiles of compound 4, the co-crystallized ligands, and the reference insecticides corroborated the docking results, delineating key stabilizing residues and revealing distinct dynamic patterns associated with neurotoxic and endocrine-modulating mechanisms of action.6,7,49,52
The redocking of the co-crystallized ligands served as an essential internal validation step that confirmed the reliability of the docking protocol, the accuracy of grid box definition, and the consistency of scoring functions. Comparison of binding residues between the co-crystallized ligands, reference insecticides, and tested compounds enabled the identification of conserved amino acids that are likely to mediate stable and biologically meaningful interactions. Furthermore, molecular dynamics simulations provided an energetic and conformational validation of docking predictions, revealing the stability of each complex under near-physiological conditions and offering insight into the flexibility of active-site residues and the persistence of key noncovalent contacts.
Together, the integrated bioassay and in silico framework employed in this study provides a mechanistic basis for interpreting larvicidal potency in terms of molecular binding behavior. This approach also supports the broader objective of discovering multitarget larvicides capable of simultaneously disrupting both the neural and endocrine systems of Culex pipiens, thereby offering a promising strategy to overcome resistance and enhance vector control efficacy.
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