Open Access Article
Tuan-Anh Ngoc Tran
ab,
Linh Dieu Nguyen
ab,
Khoi Nam Nguyen
ab,
Phu Hoang Dang
ab and
Hai Truong Nguyen
*ab
aDepartment of Organic Chemistry, Faculty of Chemistry, University of Science, Ho Chi Minh City 700000, Vietnam. E-mail: ngthai@hcmus.edu.vn
bVietnam National University, Ho Chi Minh City 700000, Vietnam
First published on 18th March 2026
Liver cancer remains a major global health challenge, necessitating the development of new therapeutic agents. In this study, a series of 1,2,4,5-tetrasubstituted imidazole derivatives were synthesized via a green, one-pot four-component reaction using the recyclable deep eutectic solvent [Bet]2[PTSA] under solvent-free conditions, affording high yields. Among them, compounds 16d, 16j, and 16n exhibited notable cytotoxicity against HepG2 cells, with 16n showing the strongest activity (IC50 = 32.54 µM), outperforming camptothecin. Molecular docking and dynamics simulations revealed strong and stable binding of 16n to GLUT1, involving key residues such as Trp388, Asn288, and Trp412. Structure-activity relationship (SAR) analysis indicated that phenolic hydroxyl and para-methoxy substituents enhance anticancer activity. These results identify compound 16n as a promising lead for targeted liver cancer therapy.
Heterocyclic blocks present a promising avenue for discovering novel molecules for cancer therapy. In recent years, numerous small molecules featuring heterocyclic rings have been suggested for the advancement of new candidates exhibiting anti-cancer activity in drug discovery initiatives.13 Heterocyclic compounds, commonly referred to as heterocycles, are organic chemical entities characterized by a cyclic structure containing one or more heteroatoms.14 Heterocycles encompass various agricultural, pharmaceutical, and veterinary applications.15 Currently, heterocycles are utilized in the manufacturing process of a wide variety of organic chemical compounds.16 Heterocycles are common in natural products and have found widespread application in drug discovery and medicinal chemistry. This category includes physiologically natural products, active complexes, and chemicals that are utilized extensively in medical chemistry.17,18 Among these heterocyclic compounds that include nitrogen: imidazoles, indoles, pyrroles, pyrazoles, and pyrrolidines have become increasingly important in various study fields, including chemical synthesis and medicine.17 For instance, benzimidazole compounds exhibit significant anticancer activity and have been studied for potential therapeutic applications, including antiviral, anticancer, or antidiabetic.19,20 Chrysin benzimidazole derivatives were synthesized by Zhe Wanga, which showed that some novel compounds can impede tumor proliferation.21 A potential heterocyclic framework is imidazole, which is a widely used structural motif in pharmaceuticals, natural products, endogenous chemicals, and polymers.22 Among them, the imidazole compound is of particular interest due to its ability to interact with many different biological targets through hydrogen bonding and π–π stacking interactions. Imidazole is a five-membered heterocyclic ring containing three carbon and two nitrogen atoms at non-adjacent positions. It is a versatile framework with diverse applications in both chemistry and bioactivity. Imidazole and its derivatives are also present in pharmaceutical medicines, including clonidine (antihypertensive),23 metronidazole (antibacterial, antifungal),24,25 dacarbazine (anticancer),26 celecoxib (anti-inflammatory),27 clotrimazole (antifungal),28 and dipyrone (antipyretic)29 (Fig. 1). The imidazole ring is a common structural motif in various drugs, such as antifungal medications, antihistamines, and antiviral agents, highlighting its significance in pharmaceutical research and development.30 Especially, biological activities of imidazole scaffolds have been reported to exhibit a broad range of anticancer, including antitumor activity and anticancer agents.
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| Fig. 1 Drugs featuring an imidazole scaffold.31 | ||
Substituents were introduced onto the imidazole scaffold to modulate biological activity and to investigate structure-activity relationships (SAR). Variations in the electronic and steric properties of these substituents contribute to enhanced interactions with the molecular target, improved physicochemical properties, and increased biological applicability of the imidazole derivatives. For the synthesis of imidazole, especially 1,2,4,5-tetrasubstituted imidazoles, deep eutectic solvents can be applied as a catalyst in the process of synthesis. The incorporation of deep eutectic solvents (DESs) as eco-friendly catalytic media has recently revolutionized multicomponent reactions (MCRs), enhancing both their efficiency and environmental sustainability. MCRs constitute a highly versatile synthetic strategy that enables the one-pot assembly of complex and structurally diverse molecules from multiple reactants. Owing to their inherent advantages-such as high atom economy, mild reaction conditions, and minimal waste formation-MCRs have become a cornerstone of green organic synthesis.32 DESs are defined as a novel and sustainable class of media, representing eutectic mixtures of two or more components, which are typically a hydrogen bond acceptor (HBA), such as choline chloride, and a hydrogen bond donor (HBD), like urea or glycerol. The essence of their formation lies in the vigorous, directional hydrogen-bonding network established between the components, which dramatically decreases the freezing point of the mixture, resulting in a liquid at or near room temperature, often with similar physicochemical properties to ionic liquids but at a fraction of the cost and complexity. The fundamental role of DESs is to act as green, non-volatile, non-flammable, and often biodegradable alternatives to conventional hazardous organic solvents. The applications of DESs are extensive, spanning extraction, electrochemistry, and material science, yet their utility is most profound in organic synthesis catalysis. Here, DESs serve as versatile, recyclable reaction media that significantly enhance sustainability. They are not merely inert solvents; their unique, highly polar, and structured environment can stabilize catalysts and activate reactants through hydrogen bonding, often leading to improved yields and enhanced product selectivity.33 Furthermore, DESs containing acidic HBDs can act as Brønsted acid catalysts themselves, eliminating the need for external catalysts in reactions like multicomponent condensations.34 This combination of simple formation, an environmentally superior role, and exceptional chemical tunability makes DESs a critical, cutting-edge platform for developing highly efficient, economic, and environmentally responsible catalytic processes in modern synthetic chemistry.
The combination of betaine (as the hydrogen bond acceptor) and p-toluenesulfonic acid (PTSA, as the hydrogen bond donor) is an excellent choice for creating a DES for organic synthesis due to its strong potential for Brønsted acid catalysis and its favorable physical properties. Betaine, a zwitterion, provides a high concentration of the quaternary ammonium cation, offering a highly polar, charged environment that can effectively stabilize transition states and polar intermediates.35 Crucially, PTSA is a strong organic acid, ensuring that the resulting DES is highly acidic. This high acidity is essential for catalyzing a wide range of organic reactions, such as esterification, Biginelli reactions, or other processes that require a powerful Brønsted acid catalyst.36,37 The strong, favorable hydrogen-bonding interaction between the carboxylate group of betaine and the sulfonic acid proton of PTSA significantly depresses the melting point of the mixture, forming a liquid DES at or near room temperature. This low melting point, combined with the DES's non-volatility and potential for reuse, makes it a greener, more efficient alternative to conventional volatile organic solvents and corrosive liquid acids.
To address the limitations of current HCC therapies, this study focuses on the synthesis of a novel series of 1,2,4,5-tetrasubstituted imidazoles synthesized from benzil, benzaldehyde, aniline and ammonium acetate with the support of a deep eutectic solvent [Bet]2[PTSA] via a one-pot multicomponent reaction. The use of DES provided a mild, efficient, and environmentally friendly route for imidazole formation, offering advantages such as high yield, simple work-up, and catalyst recyclability. The primary objective of this work is to synthesize these novel imidazole derivatives and evaluate their cytotoxic potential against the HepG2 human liver carcinoma cell line. The anticancer potential of the synthesized imidazole derivatives was evaluated through in vitro cytotoxic assays, identifying several compounds with remarkable inhibitory activity against HepG2 cells. Furthermore, molecular docking studies were conducted to predict their interactions with relevant target proteins, and selected candidates were further validated in vitro using three different liver cancer cell lines.
O in the carboxylic group and C–N–C bonds belonging to betaine's structure.38 The typical vibration observed at 662 cm−1 belongs to the C–S bond existing in the structure of PTSA.39 In the FT-IR spectrum of pure PTSA, the peak at 835 cm−1 is attributed to the S–OH vibration, while the antisymmetric and symmetric stretching vibrations of the S
O group appear at 1173 cm−1 and 1118 cm−1, respectively. In contrast, the S–OH vibration disappears in the DES spectrum, signaling the involvement of this group in hydrogen bonding between the two components. Furthermore, the S
O stretching vibrations shift to 1148 cm−1 and 1130 cm−1, providing further evidence of the intermolecular interactions within the eutectic system.40 The successful formation of the DES is emphatically demonstrated by the final product's spectrum. It meticulously retains the principal functional group characteristic peaks from both betaine and PTSA, providing unambiguous evidence of the successful stoichiometric combination required to form the [Bet]2[PTSA] compounds.
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| Fig. 2 (A) Structure of [Bet]2[PTSA]; (B) The FT-IR spectra and (C) TGA curves of betaine, PTSA, and [Bet]2[PTSA]. | ||
Thermal gravimetric analysis (TGA) showed the thermal stability of the [Bet]2[PTSA] catalyst (Fig. 2C). The obtained curve shows the first weight loss below 100 °C, which may be ascribed to the removal of residual solvents, gases, and water. Upon comparison with the individual components, the thermal decomposition started at 250 °C for PTSA and 300 °C for betaine. This finding provides clear evidence that the combination of betaine and PTSA at 100 °C leads to the formation of a eutectic mixture facilitated by hydrogen-bond interactions, which in turn significantly lowers the thermal decomposition temperature of the resulting product. These results indicate that the TGA curve of the catalyst confirms its thermal stability up to 150 °C, suggesting that [Bet]2[PTSA] can be efficiently applied for a range of organic transformations across different temperature conditions.41
As can be seen in Fig. 3, the formation of [Bet]2[PTSA] from betaine and p-toluenesulfonic acid (PTSA) is clearly evidenced by the 1H-NMR spectral changes. In the spectrum of pure betaine, the characteristic singlet of the –N(CH3)3 and methylene (–CH2–) groups appear at 3.32 and 4.23 ppm, respectively, while PTSA exhibits aromatic proton signals at 7.64–7.29 ppm and a methyl (-CH3) signal near 2.32 ppm. Upon formation of [Bet]2[PTSA], noticeable upfield shifts of the –N(CH3)3 and methylene protons of betaine are observed, together with slight changes in the aromatic proton region of PTSA. These shifts indicate strong ionic interactions and proton transfer between the sulfonic acid group (–SO3H) of PTSA and the carboxylate functionality of betaine. The disappearance (or strong attenuation) of the acidic proton signal of PTSA further confirms proton transfer, leading to the formation of the protic ionic salt [Bet]2[PTSA].42,43
| Entry | Time (h) | Temperature (°C) | %mol of [Bet]2[PTSA] | Yieldb (%) |
|---|---|---|---|---|
| a Reaction conditions: Benzil (1 mmol), benzaldehyde (1 mmol), aniline (1 mmol), ammonium acetate (1 mmol), solvent-free.b Isolated yield by crystallization in acetone (10–15 mL).c Microwave method.d Sonication method.e The heating and stirring method. | ||||
| 1 | 3 | 100 | 3.5 | Tracec |
| 2 | 3 | 100 | 3.5 | 16d |
| 3 | 1 | 100 | 3.5 | 32 |
| 4 | 2 | 100 | 3.5 | 55 |
| 5 | 3 | 100 | 3.5 | 75e |
| 6 | 4 | 100 | 3.5 | 66 |
| 7 | 5 | 100 | 3.5 | 61 |
| 8 | 6 | 100 | 3.5 | 56 |
| 9 | 3 | RT | 3.5 | 11 |
| 10 | 3 | 60 | 3.5 | 30 |
| 11 | 3 | 80 | 3.5 | 64 |
| 12 | 3 | 120 | 3.5 | 64 |
| 13 | 3 | 100 | 0 | 41 |
| 14 | 3 | 100 | 0.7 | 55 |
| 15 | 3 | 100 | 16 | 55 |
| 16 | 3 | 100 | 21 | 44 |
| 17 | 3 | 100 | 35 | 37 |
The model reaction was systematically examined under different experimental parameters to determine the optimal pathway. Through this optimization, substituted 1,2,4,5-tetrasubstituted imidazole derivatives were efficiently synthesized within a shorter reaction time, affording moderate to significant yields as summarized in Table 1. A series of reactions using representative substrates was then performed under varied conditions, including reaction time (Entries 3–8, Table 1), temperature (Entries 5 and 9–12, Table 1), and the amount of deep eutectic solvent (DES) serving as the catalyst (Entries 5 and 13–17, Table 1).
Furthermore, the reactions were tested in both protic and aprotic solvents, as well as in the presence of different catalytic systems. Among the examined catalysts, [Bet]2[PTSA] at 3.5 mol% displayed superior catalytic activity and selectivity toward the target imidazole derivatives. The highest yield (75%) was obtained under solvent-free conditions. In contrast, a marked decline in catalytic performance was observed when the reactions were carried out in solvents (Entries 1–8, Table 2). At elevated temperatures (100 °C), the deep eutectic structure was destabilized, leading to partial decomposition of its organic constituents in the solvent medium. This behavior can be explained by the reduction in the mass stability of [Bet]2[PTSA] at both ambient and reflux temperatures. Furthermore, various components involved in the synthesis of [Bet]2[PTSA] were examined to validate the efficiency of the catalyst produced (Entries 8–14, Table 2). Additionally, with the contribution of Brønsted acid in the efficiency of 1,2,4,5-tetrasubstituted imidazole reaction, various types of Brønsted DES were applied as catalysts for comparison purposes. As demonstrated by the data in Table 2, utilizing a DES catalyst, composed of both betaine and PTSA, resulted in a superior yield of the main product compared to employing either betaine or PTSA in isolation for the catalytic reaction. Moreover, substituting the [Bet]2[PTSA] catalyst with structurally analogous catalysts, but possessing a modified number of Brønsted acid sites, led to a discernible and substantial reduction in the main product yield. The investigations prove the crucial role of Brønsted acid sites in the synthesis reaction.
| Entry | Catalysts | %mol of [Bet]2[PTSA] | Solvents | Yieldb (%) |
|---|---|---|---|---|
| a Reaction conditions: Benzil (1 mmol), benzaldehyde (1 mmol), aniline (1 mmol), ammonium acetate (1 mmol), catalysts (3.5% mol), solvents (3 mL) at 100 °C, 3 h.b Isolated yield by crystallization in acetone (10–15 mL).c Reactions involving volatile solvents were carried out using a reflux system. | ||||
| 1 | None | 0 | Ethanolc | 12 |
| 2 | None | 0 | Methanolc | 6 |
| 3 | None | 0 | Tetrahydrofuranc | Trace |
| 4 | None | 0 | n-Hexanec | 27 |
| 5 | None | 0 | 1,4-Dioxanec | 19 |
| 6 | None | 0 | Acetonec | 3 |
| 7 | None | 0 | Ethyl acetatec | 8 |
| 8 | [Bet]2[PTSA] | 3.5 | None | 75 |
| 9 | Betaine | 3.5 | None | 45 |
| 10 | PTSA | 3.5 | None | 40 |
| 11 | [HACl][Oxalic] | 3.5 | None | 52 |
| 12 | [HACl][Glycine] | 3.5 | None | 30 |
| 13 | [Bet][Maleic acid] | 3.5 | None | 34 |
| 14 | [ChCl][PTSA] | 3.5 | None | 38 |
| 15 | None | 0 | None | <10 |
The catalyst was recovered after finishing the experiment, and its structure was characterized by FT-IR analysis (Fig. 4). It shows that the typical signals for peaks in the [Bet]2[PTSA] structure have changed significantly. Herein, the absorption vibration of the C
O bond at 1723 cm−1 considerably fell, proving a distinct change in the structure of DES compared to the original. The changes of intensities and wavenumbers of S
O bonds observed in the FT-IR spectrum of the recovered catalyst were attributed to partial disruption or rearrangement of the hydrogen-bonding network within the DES structure under prolonged heating conditions. Besides, the disappearance of some signals in recover spectrum in comparison of raw components can be explained by the change in the chemical structure of DES due to the high temperature. As a result, the efficiency of the main product was reduced due to changes in the catalyst structure.
Under the optimized conditions described above, a scale-up experiment was performed through the condensation of benzil (1 mmol), benzaldehyde (1 mmol), aniline (1 mmol), and ammonium acetate (1 mmol) using [Bet]2[PTSA] (3.5 mol%) as a catalyst at 100 °C for 3 h, affording compound 16a (Fig. 5). The reaction was subsequently conducted at different scales (1, 5, 10, and 20 mmol), and the isolated yields of product 16a ranged between 70% and 75%.
Based on the optimal conditions which were obtained through the above investigation, 1,2,4,5-tetra substituted imidazole derivatives were synthesized under the support of [Bet]2[PTSA] 3.5% mol without solvent (Scheme 1). At first, with aniline as a co-reactant, based on the main product yield formed from the synthesis reactions of 1,2,4,5-tetrasubstituted imidazole derivatives, it can be concluded that aromatic aldehyde derivatives bearing electron-donating groups generally provide a higher main product yield compared to the yield from reactions involving electron-withdrawing groups (16a–h). Specifically, for reactions using aniline as a co-reactant and varying the electron-withdrawing substituents on benzaldehyde, the main product yield obtained is in the range of 45–57%. Conversely, an electron-donating group such as 4-Me gives a relatively high yield of 65%. Although the nitro group is a strong electron-withdrawing substituent, the nitro group at the para-position derivative exhibited a higher yield than expected, at about 60%. This can be explained by the fact that the para-position of NO2 minimizes steric hindrance, allowing efficient molecular interactions during condensation and cyclization. Therefore, despite its electron-withdrawing nature, the enhanced carbonyl activation and steric advantages at the p-position outweigh the deactivating effect on the reaction, leading to a comparatively higher yield for the 4-NO2-substituted product. The effect of the hydroxyl group in the ortho and meta-positions was also investigated. The results showed that the hydroxyl group at the ortho-position yielded a lower product compared to the meta-position. This can be explained by the fact that 2-hydroxybenzaldehyde forms an intramolecular hydrogen bond, which subsequently reduces the activity (reactivity) of the aldehyde group, thus leading to a lower yield of the main product.
When aniline was altered by 4-aminophenol (16i–o), the yield of derivatives significantly enhanced. Typically, the reaction of four components, including benzil, 4-methoxylbenzaldehyde, 4-aminophenol and ammonium acetate with 3.5% mol of [Bet]2[PTSA] at the same temperature as the above investigations illustrated the highest yield, approximately 86%. This can be attributed to the strong electron-donating resonance effect of the phenolic –OH group, which enhances the nucleophilicity of the amino functionality and thereby promotes the initial condensation with the aldehyde to form the imine intermediate more efficiently. However, the notably low yield (10%) obtained when employing 4-fluorobenzaldehyde as a substrate can be attributed to the strong electron-withdrawing inductive effect (−I) of fluorine, which significantly decreases the electron density of the carbonyl group and thereby diminishes its electrophilicity toward nucleophilic attack by aniline. Although fluorine possesses a resonance-donating (+R) ability, this effect is extremely weak and insufficient to counterbalance its dominant −I effect, resulting in a markedly reduced reactivity of the aldehyde compared to other para-substituents. Additionally, the high electronegativity of fluorine may lead to strong dipole–dipole and hydrogen-bonding interactions with the catalytic DES components, restricting effective molecular collisions between the reactants and further suppressing product formation. Consequently, 4-fluoro substitution exerts a more detrimental influence on the reaction efficiency than other halogens or electron-donating groups, leading to a significantly lower product yield.
The proposed mechanism for the synthesis of 1,2,4,5-tetrasubstituted imidazoles using [Bet]2[PTSA] as a catalyst is presented in Scheme 2. The reaction pathway is initiated by the condensation between aniline and benzaldehyde. In this step, the PTSA component of the DES acts as a Brønsted acid catalyst, activating the carbonyl group of benzaldehyde through protonation, which facilitates nucleophilic attack by aniline to form the imine intermediate (1).44,45 At the same time, ammonium acetate undergoes thermal decomposition, establishing an equilibrium that releases ammonia. This ammonia then performs a nucleophilic attack on the imine (1) to yield the aminal intermediate (2). Subsequently, intermediate (2) undergoes a cascade transformation involving condensation with benzil, intramolecular cyclization, and the elimination of two water molecules. Throughout this process, the DES continues to play a crucial role by activating carbonyl groups through hydrogen bonding interactions. The final product (4) is 1,2,4,5-tetraphenyl-1H-imidazole (4).
| Compound | Binding energy | Interacting residues |
|---|---|---|
| 16a | −7.66 | — |
| 16b | −7.62 | — |
| 16c | −7.57 | Asn411 |
| 16d | −8.23 | Asn288 |
| 16e | −8.07 | — |
| 16f | −8.16 | — |
| 16g | −7.89 | — |
| 16h | −7.90 | — |
| 16i | −7.84 | — |
| 16j | −8.33 | — |
| 16k | −7.81 | — |
| 16l | −7.69 | Glu380 |
| 16m | −7.50 | Glu380 |
| 16n | −8.23 | Asn288 |
| 16o | −7.70 | Trp388 |
| Comp | Ligand sites | Receptor sites | Type of interaction | Distance (Å) | Binding energy (kcal mol−1) | Total binding energy (kcal mol−1) |
|---|---|---|---|---|---|---|
| 16d | 6-Ring | Asn288 | Π–H | 4.35 | −0.6 | −8.23 |
| 16e | — | — | — | — | — | −8.07 |
| 16f | — | — | — | — | — | −7.77 |
| 16j | — | — | — | — | — | −8.16 |
| 16n | 6-Ring | Asn288 | Π–H | 4.52 | −0.5 | −8.23 |
The binding affinities of all the compounds were better than those of α-glucose and β-glucose reported in the previous study. The competitive inhibition between sugar molecules and these compounds is crucial for cancer treatment by reducing sugar absorption.9 Numerous studies have identified Trp388 as a critical site that appears frequently; however, we also highlight other amino acids such as Trp412, Thr137, Asn288, Gln282, Phe291, and Phe379. Interactions with these specific anchor points are expected to constrain the structural transition from the inward-open (IOP) to the outward-open (OOP) conformation, enhancing the success of the method. Residues at these positions also contribute to the interaction energy through physical bonds, ionic interactions, and hydrophobic contacts.51
The 2D and 3D views in Fig. 7 for compounds 16d, 16j, and 16n, which demonstrated actual biological activity as confirmed in the following section, highlight the key amino acid residues involved in the interactions, including Trp388, Trp412, Asn288, Glu380, Thr30, and Phe379. However, the affinity interaction investigations with this active site were limited to a static state and did not account for the dynamics of the ligand and protein. In a suitable state, interactions with important residues can be recorded, although this was not associated with the best energy state among the five poses, which would be detailed in Table S3. Additionally, the RMSD (Root Mean Square Deviation) is a standard method that involves comparing the docked pose of a ligand with its cocrystal structure. A pose is considered good if its RMSD is less than 2.0 Å.9 All docking cases of the 15 compounds exhibited RMSD values less than 2 Å, indicating that all poses were well-aligned and reliable. From the docking studies, the scope of in vitro testing was narrowed down. Among the 15 synthesized compounds, biological activity assays were conducted on compounds 16a, 16d, 16e, 16f, 16j, and 16n.
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| Fig. 7 The 2D and 3D views of the docking model of the interaction of the target compounds with HepG2 (PDB code 5EQG) compounds 16d, 16j, and 16n. | ||
| Entry | Compounds | R | R’ | I (%)a |
|---|---|---|---|---|
| a I (%) stands for Inhibition percentage.b DMSO is the negative control.c Camptothecin is the positive control. | ||||
| 1 | 16a | ![]() |
H | 26.65 ± 4.85 |
| 2 | 16d | ![]() |
H | 59.73 ± 2.42 |
| 3 | 16e | ![]() |
H | 8.79 ± 4.80 |
| 4 | 16f | ![]() |
H | 10.55 ± 5.72 |
| 5 | 16j | ![]() |
OH | 57.84 ± 1.47 |
| 6 | 16n | ![]() |
OH | 78.19 ± 2.20 |
| 7 | DMSOb | −0.21 ± 1.48 | ||
| 8 | Camptothecinc | 50.31 ± 1.00 | ||
| Compounds | Concentration (µM) | IC50 (µM) | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| 10 | 20 | 30 | 40 | 50 | 60 | 75 | 80 | 100 | ||
| 16d | — | 0.66 ± 3.48 | — | 18.05 ± 0.87 | — | 30.26 ± 1.24 | — | 44.72 ± 2.97 | 59.73 ± 2.42 | 85.63 |
| 16j | — | 1.86 ± 4.99 | — | 18.28 ± 4.12 | — | 33.86 ± 0.95 | — | 41.69 ± 2.79 | 57.84 ± 1.47 | 87.96 |
| 16n | 3.77 ± 2.83 | 34.37 ± 1.22 | 51.16 ± 1.04 | 62.43 ± 3.35 | 68.95 ± 3.88 | — | 70.66 ± 2.23 | — | 78.19 ± 2.20 | 32.54 |
The IC50 values for 16d, 16j, and 16n are presented in Table 6 and Fig. 8, highlighting the superior activity of compound 16n compared to 16d and 16j. The docking study demonstrates the binding energy of the ligand components, with three compounds showing a high percentage of cytotoxicity. However, the incomplete consistency observed in the docking study (16j (−8.33) < 16d (−8.23) and 16d (−8.23)) indicates that the simulation results are primarily useful for screening and guiding purposes, as they mainly reflect the predicted binding energy and interaction patterns of the compounds at the active site. Predicting interaction potential using screening software is a crucial step in selecting this promising compound for activity testing. To explain why compound 16n exhibits the lowest IC50 compared to the other two compounds, it is necessary to consider the factors of molecular dynamics and the relationships that influence the parts affecting activity.
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| Fig. 8 The dose response curves of the cytotoxicity of compounds 16d, 16j, and 16n towards the HepG2 tumor cell line. | ||
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| Fig. 9 The 2D and 3D views of the docking model of the interaction of the target compounds with HepG2 (PDB code 5EQG) compounds 16d, 16j, and 16n. | ||
For compound 16j, which had comparable activity, stability was observed during the first 60 ns in the simulated environment. However, abnormal fluctuations occurred thereafter, indicating that extending the duration of kinetic study may reveal complete turbulence within this complex. The hydrogen bond density of 16j was more consistent than that of 16d, with the ability to form up to two hydrogen bonds. However, a sparse distribution was identified around 80 ns, corresponding to an instability, respectively RMSD axis.
The compound with the best IC50, 16n, exhibited fluctuations around the backbone for the first 10 ns but stabilizes for the remainder of the simulation. Compound 16n also consistently formed two hydrogen bonds, explaining its superior activity compared to 16d and 16j. Additionally, hydrogen bonds with residues for all three compounds were presented in Fig S1–S3, where the two compounds containing hydroxyl groups on the aromatic ring (R′) demonstrated characteristic interactions with residues Trp388, Thr30, Tyr292, Asn415, and Thr137. These structural modifications can significantly influence the activity of the compounds.
Single cells were seeded in 96-well culture plates at a density of 104 cells per well (for HepG2 cell lines). After 24 hours of culture, the cell population was incubated with the test substance at various concentrations for 48 hours. Then, the total protein from the test cells was fixed with 50% cold trichloroacetic acid (Sigma) solution and stained with 0.2% Sulforhodamine B (Sigma) solution. The results were read by ELISA reader at two wavelengths of 492 nm and 620 nm. The experiments were repeated three times, and the results are presented as mean ± standard deviation.
After obtaining the optical density values at wavelengths 492 nm and 620 nm (denoted as OD492 and OD620):
| Calculate the value OD = OD492 − OD620 | (1) |
| Calculate OD492 (or OD620) = ODtb − ODblank | (2) |
Calculate the percentage of cytotoxicity according to the formula:
• ODtb: OD value of the well containing cells.
• ODblank: OD value of the blank well (no cells).
• ODTN: OD value of the test sample calculated from formulas (1) and (2).
• ODC: OD value of the control sample calculated from formulas (1) and (2).
IC50 was determined using Prism software with a non-linear multi-parameter regression method and R2 > 0.9.
The process for defining the active site involved using Site Finder to select the position where the ligand was co-crystallized. Once the active site was identified, it was marked as a “Dummy atom”. The docking function in MOE performed virtual docking with the Triangle Matcher placement method. The scoring methods employed included London dG, Induced Fit refinement, and GBVI/WSA dG scoring against dummy atoms surrounding the substrate binding site. Potential docking positions were identified based on the lowest energy-scoring algorithm. Additionally, it was ensured that the docking pocket provided adequate space for compound binding and facilitated reasonable interactions with the protein residues.
| 5-FU | Fluorouracil |
| A-549 | Lung cancer |
| AFP | Alpha-fetoprotein |
| Asn411 | Asparagine 411 |
| ATCC | American Type Culture Collection |
| Bcl-2 | Regulation of apoptosis |
| Bet | Betain |
| DESs | Deep eutectic solvents |
| DMSO | Dimethyl sulfoxide |
| ELISA | Enzyme-linked Immunosorbent assay |
| EtOH | Ethanol |
| FBS | Fetal Bovine serum |
| FT-IR | Fourier Transport Infrared |
| GBVI/WSA | Force field-based scoring function |
| Gln161 | Glutamine 161 |
| Gln282 | Glutamine 282 |
| Glu380 | Glutamate 380 |
| GLUT1 | Glucose Transporter 1 |
| GLUTs | GLUT family |
| HBA | Hydrogen bond acceptor |
| HBD | Hydrogen bond donor |
| HCC | Hepatocellular carcinoma |
| HepG2 | Human liver cancer cell line |
| His160 | Histidine 160 |
| IC50 | half maximal inhibitory concentration |
| IOP | The inward-open conformation |
| lle164 | L-Leucine 164 |
| MCRs | multicomponent reactions |
| MOE | Molecular Operating Environment |
| OCC | The outward-occluded conformation |
| OD | Optical density |
| OOP | The outward-open conformation |
| PDB | Protein Data Bank |
| Phe26 | Phenylalanine 26 |
| Phe379 | Phenylalanine 379 |
| PIO | The partially inward-occluded conformation |
| Pro385 | Proline 385 |
| PTSA | p-Toluenesulfonic acid |
| RMSD | Root Mean Square Deviation |
| ROS | Reactive oxygen species |
| RPMI | Roswell Park Memorial Institute |
| SLC2 | Solute carrier family 2 |
| SLC2A1 | Solute carrier family 2-member 1 |
| SRB | Sulforhodamine B |
| TGA | Thermal gravimetric analysis |
| Thr137 | Threonine 137 |
| Thr30 | Threonine 30 |
| TM | Transmembrane |
| TM10a/10b | Transmembrane 10a/10b |
| TM1-TM12 | Transmembrane 1–12 |
| TM7a/7b | Transmembrane 7a/7b |
| Trp388 | Tryptophan 388 |
| Trp412 | Tryptophan 412 |
| XyLE | An important enzyme in the degradation of toluenes, benzoates, and their methyl derivatives |
Supplementary information (SI): general procedures, E-factor calculations, full characterization of both the catalyst and the synthesized compounds, copies of 1H, and 13C NMR spectra. See DOI: https://doi.org/10.1039/d6ra00422a.
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