Open Access Article
Wang Jiang
a,
Qun Hao Lia,
Jiasong Guana,
Ahmed F. Elkarmoutab,
Zhonghui Ma*a and
Zhiwei Su*a
aNational Demonstration Center for Experimental Plant Science Education, College of Agriculture, Guangxi University, Nanning 530004, Guangxi, China. E-mail: mazhonghui@gxu.edu.cn; suzhiwei@gxu.edu.cn
bDepartment of Horticulture, Faculty of Agriculture, Tanta University, Tanta, Egypt
First published on 6th May 2026
Four previously undescribed phenyl polyenes, prophenalamides D-E (1–2) and phenalamides F-G (3–4), along with nine known compounds (5–13), were isolated from the fermentation extract of Myxococcus stipitatus GXUA 01510. Compounds 10–13 have not previously been reported from myxobacteria. The structures of these compounds were elucidated using HR-ESI-MS, and NMR spectroscopic analyses. The antifungal experiment revealed that the thiazole compounds cystothiazole A (7) and melithiazol F (9) exhibited significant activity against Fusarium sacchari strains FS-9DF-3-2 and FS-2-1, an agricultural pathogen associated with sugarcane Pokkah boeng disease. Cystothiazole A (7) significantly inhibited spore germination, displaying EC50 values of 1.00 µg mL−1 against FS-9DF-3-2 and 0.67 µg mL−1 against FS-2-1. Regarding mycelial growth, it exhibited EC50 values of 3.01 and 9.71 µg mL−1 for the two strains. Remarkably, unlike the positive control and many other antifungal natural products, cystothiazole A (7), which is a rare trait among existing agents, exhibits a distinctive ability to suppress spore germination. Similarly, melithiazol F (9) inhibited mycelial growth, with EC50 values of 2.94 and 1.08 µg mL−1 against FS-9DF-3-2 and FS-2-1, respectively. Furthermore, both cystothiazole A (7) and melithiazol F (9) significantly increased nucleic acid and protein leakage in F. sacchari spores, highlighting their potential to disrupt cell membrane integrity. These findings not only enrich the chemical diversity of myxobacterial metabolites but also provide promising molecular scaffolds for developing novel biocontrol agents.
Recent research into the biocontrol of myxobacteria has preliminarily elucidated their antagonistic mechanisms, which primarily involve the secretion of lytic enzymes and antimicrobial secondary metabolites.9 For example, Dong et al.10 reported that Myxococcus xanthus R31 exhibits predatory activity against the tomato wilt pathogen Ralstonia solanacearum in plate assays, achieving 81.9% control efficacy against tomato bacterial wilt in pot experiments. Proteomic analysis identified nine lytic enzymes among the extracellular proteins of R31, underscoring the critical role of secreted proteins in its predatory behavior.10 Beyond proteins, secondary metabolites also play a pivotal role. In the study by Meliah et al.,11 ethyl acetate extracts from Corallococcus strains KR39b.5 and SLU3.3 inhibited the growth of Fusarium odoratissimum, the causal agent of Panama disease in bananas, by more than 40%. Similarly, Wu et al.12 demonstrated that active extracts from Sorangium cellulosum B25-I-1 significantly reduced the soluble protein content and antioxidant enzyme activity in Phytophthora infestans. These extracts were found to induce oxidative stress and increase membrane permeability, effectively inhibiting pathogen infection in detached potato leaves. Further analysis identified methyl (2R)-2-azido-3-hydroxy-2-methylpropanoate and N-(3-amino-2-hydroxypropyl)-N-methylsulfuric diamide as the major antagonistic components.12 Collectively, these findings highlight the considerable biocontrol potential of myxobacteria.
Sugarcane is a vital crop for sugar and energy production, accounting for approximately 70% of global sugar production and offering substantial potential for biomass and ethanol-based biofuel production.13 However, large-scale continuous cultivation has led to a surge in crop diseases, particularly Pokkah boeng disease mainly caused by Fusarium sacchari, which severely affects both yield and quality of sugarcane.14 The spread of sugarcane Pokkah boeng disease relies heavily on the dispersal of fungal spores.15 However, most prior studies have focused primarily on inhibiting the mycelial growth of the pathogen, with relatively few studies have examined spore germination. Among these, the tested fungicides have generally shown limited effectiveness.16,17 For example, Hu et al.16 reported that the antimicrobial peptide fengycins effectively inhibited F. moniliforme mycelial growth but delayed only spore germination without causing inactivation. In our prior studies, we reported that fermentation extracts from various myxobacterial strains strongly inhibited F. sacchari.18 Among them, Myxococcus stipitatus GXUA 01510 exhibited particularly promising antifungal activity. However, the chemical basis underlying its activity remains unclear, and the inhibitory mode of action of its active metabolites against F. sacchari has not been explored. Building on this, this study describes the isolation and identification of four undescribed phenyl polyenes and nine known compounds from the metabolites of M. stipitatus GXUA 01510. Among them, cystothiazole A (7) and melithiazol F (9) exhibited significant antifungal activity against F. sacchari strains. Furthermore, a preliminary investigation revealed that some of the isolates inhibited spore germination and mycelial growth of F. sacchari, accompanied by significant leakage of nucleic acids and proteins. By identifying the bioactive metabolites of M. stipitatus GXUA 01510 and preliminarily revealing their antifungal mode of action against F. sacchari, this study provides a clearer basis for exploiting myxobacterial metabolites in the biological control of sugarcane Pokkah boeng disease.
Compound 1, obtained as a colorless resinous solid, was determined to have the molecular formula C20H28O2, as established by the HR-ESI-MS ion at m/z 323.1987 [M + Na]+ (calcd. 323.1983) and supported by the 1D and 2D NMR data. The IR spectrum exhibited characteristic absorptions for an α,β-unsaturated aldehyde (1675 cm−1), a benzene ring (1453, 747 and 699 cm−1).27 The 1H NMR spectrum (Table 1) revealed signals corresponding to an aldehyde proton [δH 9.43 (1H, s, H-1)], five benzene ring protons [δH 7.16–7.26 (5H, m, H-12 to H-16)], two olefinic protons [δH 6.46 (1H, dd, J = 9.6, 1.4 Hz, H-3), 5.24 (1H, d, J = 9.6 Hz, H-7)], four methyl signals [δH 1.79 (3H, d, J = 1.4 Hz, 2-Me), 0.95 (3H, d, J = 6.8 Hz, 4-Me), 1.60 (3H, d, J = 1.4 Hz, 6-Me), 0.98 (3H, d, J = 6.8 Hz, 8-Me)], two methylene signals [δH 1.53–1.70 (2H, m, H-9), 2.52–2.62 (2H, m, H-10)], and three methine signals [δH 2.90 (1H, m, H-4), 3.86 (1H, d, J = 8.0 Hz, H-5), 2.38–2.47 (1H, m, H-8)]. The 13C NMR spectrum displayed 20 carbon signals (Table 1), including one aldehyde carbon at δC 195.4 (C-1), six benzene carbons [δC 142.5 (C-11), 128.4 (C-12), 128.3 (C-13), 125.7 (C-14), 128.3 (C-15), 128.4 (C-16)], four olefinic carbons [δC 139.7 (C-2), 157.7 (C-3), 133.9 (C-6), 135.4 (C-7)], four methyl carbons [δC 9.6 (2-Me), 16.6 (4-Me), 11.5 (6-Me), 21.0 (8-Me)], two methylene carbons [δC 38.9 (C-9), 33.9 (C-10)] and three methine carbons [δC 37.2 (C-4), 81.9 (C-5), 31.7 (C-8)]. The sequential 1H–1H COSY correlations observed from H-3 to H-10 (Fig. 2), together with the 1H and 13C NMR data, indicate that the compound possesses a core structure featuring a monosubstituted benzene ring conjugated with an unsaturated branched polyene chain. Analysis of the HMBC spectrum reveals that the correlation between [δH 9.43 (1H, s, H-1)] and [δC 139.70 (C-2)] (Fig. 2), suggesting that this compound is a terminal aldehyde. The HMBC correlation (Fig. 2) between [δH 7.16 (3H, m, H-12, 14, 16)] and [δC 33.91 (C-10)] indicated a phenyl substitution at C-10. The characteristic olefinic proton signals [δH 6.46 (1H, dd, J = 9.6, 1.4 Hz, H-3), 5.24 (1H, d, J = 9.6 Hz, H-7)] were assigned to Δ2 and Δ6 double bonds, respectively. The simultaneous NOESY correlations (Fig. 2) were observed between H-1 and H-3, 2-Me and 4-Me, 6-Me and H-5, as well as H-7 and H-8, collectively suggested that the double bonds at C-2 and C-6 adopt the E configurations, thereby supporting the assignment of a 2E,6E-dienal moiety.
| Position | 1 | 2 | |||
|---|---|---|---|---|---|
| δC | δH (J in Hz) | Position | δC | δH (J in Hz) | |
| a 1H NMR spectra measured at 500 MHz, 13C NMR spectra measured at 125 MHz. ‘*’ represents that the space left out corresponds to other similar signals of another compound. | |||||
| 1 | 195.4 | 9.43, s | 1 | 171.6 | — |
| 2 | 139.7 | — | 2 | 115.2 | 5.80, d (15.6) |
| 3 | 157.1 | 6.46, dd (9.6, 1.4) | 3 | 151.7 | 7.42, d (15.6) |
| * | — | — | 4 | 133.8 | — |
| * | — | — | 5 | 145.7 | 5.87, d (9.8) |
| 4 | 37.2 | 2.85–2.94, m | 6 | 37.2 | 2.38–2.47, m |
| 5 | 81.9 | 3.86, d (8.0) | 7 | 82.2 | 3.77, d (8.1) |
| 6 | 133.9 | — | 8 | 134.0 | — |
| 7 | 135.4 | 5.24, d (9.6) | 9 | 135.2 | 5.22, d (9.5) |
| 8 | 31.7 | 2.38–2.47, m | 10 | 31.9 | 2.72–2.80, m |
| 9 | 38.9 | 1.53–1.70, m | 11 | 39.0 | 1.53–1.70, m |
| 10 | 33.9 | 2.52–2.62, m | 12 | 33.9 | 2.51–2.62, m |
| 11 | 142.5 | — | 13 | 142.6 | — |
| 12 | 128.4 | 7.12–7.19, m | 14 | 128.4 | 7.10–7.16, m |
| 13 | 128.3 | 7.23–7.29, m | 15 | 128.2 | 7.23–7.28, m |
| 14 | 125.7 | 7.12–7.19, m | 16 | 125.6 | 7.10–7.16, m |
| 15 | 128.3 | 7.23–7.29, m | 17 | 128.2 | 7.23–7.28, m |
| 16 | 128.4 | 7.12–7.19, m | 18 | 128.4 | 7.10–7.16, m |
| 2-Me | 9.6 | 1.79, d (1.4) | 4-Me | 16.6 | 1.85, d (1.4) |
| 4-Me | 16.6 | 0.95, d (6.8) | 6-Me | 17.1 | 0.89, d (6.8) |
| 6-Me | 11.5 | 1.60, d (1.4) | 8-Me | 11.6 | 1.60, d (1.4) |
| 8-Me | 21.0 | 0.98, d (6.8) | 10-Me | 21.0 | 0.97, d (6.8) |
Recent studies employing the chemical space mapping (CSM) strategy emphasized that theoretical chemical space is strictly constrained by biosynthetic rules.28 Consistent with this, myxobacteria are known to possess highly conserved biosynthetic pathways.5 Therefore, based on this conservation and the structural similarity between compounds 1–4 and previously reported analogs, it is inferred that these molecules should have a consistent stereochemical configuration.29 Specifically, they likely arise from the oxidative degradation of aliphatic amino acids such as alanine, α-aminobutyric acid, valine, and isoleucine.19 Previous studies have proposed that, for phenalamides, the biosynthetic side chain is extended outward from the phenyl ring terminus (Fig. S1).29 In light of this, compound 1 is notably postulated to act as a biogenetic precursor of compound 2–4, and other related phenalamides (Fig. S1).29 We speculate that these compounds likely share the same configuration as the known compound phenalamide A2,19 namely 4R, 5R, and 8S. This hypothesis was corroborated by NOESY data (Fig. 2). Key correlations, specifically between 2-Me/4-Me, 4-Me/6-Me/H-5, 6-Me/8-Me/H-5, and H-8/H-7/H-9, indicated that the methyl groups at C-2, C-4, and C-6 are in close spatial proximity. The structure of phenalamide A2 has been well elucidated.19 Based on the high degree of consistency in the NMR data (Table S1) for the corresponding structural fragments of compound 1 and phenalamide A2, as well as the spatial relationships observed in the NOESY spectra, the relative stereochemical assignment of the three chiral carbons of compound 1 is tentatively proposed to be 4R, 5R, and 8S. Consequently, the structure of compound 1 was identified and named prophenalamide D.
Compound 2, acquired as a colorless resinous solid, with the molecular formula C22H30O3, was determined from the HR-ESI-MS ion at m/z 365.2093 [M + Na]+ (calcd. 365.2093). The IR spectrum exhibited characteristic absorptions for a carboxylic acid (3409, 1713 and 1623 cm−1), a benzene ring (1496, 1454, 747, and 699 cm−1).27 The 1H NMR spectrum (Table 1) revealed a set of signals corresponding to an aldehyde proton [δH 9.43 (s)], five benzene ring protons [δH 7.10–7.28 (5H, m, H-14 to H-18)], three olefinic protons [δH 7.42 (1H, d, J = 15.6 Hz, H-3), 5.87(1H, d, J = 9.8 Hz, H-5), 5.22 (1H, d, J = 9.5 Hz, H-9)], four methyl signals [δH 1.82 (3H, d, J = 1.4 Hz, 4-Me), 0.89 (3H, d, J = 6.8 Hz, 6-Me), 1.60 (3H, d, J = 1.4 Hz, 8-Me), 0.97 (3H, d, J = 6.8 Hz, 10-Me)], two methylene signals [δH 1.53–1.70 (2H, m, H-11), 2.51–2.62 (2H, m, H-12)], and three methine signals [δC 2.38–2.47 (1H, m, H-6), 3.77 (1H, d, J = 8.1 Hz, H-7), 2.72–2.80 (1H, m, H-10)]. The 13C NMR spectrum displayed 22 carbon signals (Table 1), including carboxyl carbon at δC 171.6 (C-1), six benzene carbons [δC 142.6 (C-13), 128.4 (C-14), 128.2 (C-15), 125.6 (C-16), 128.2 (C-17), 128.4 (C-18)], six olefinic carbons [δC 115.2 (C-2), 151.7 (C-3), 133.8 (C-4), 145.7 (C-5), 134.0 (C-8), 135.2 (C-9)], four methyl carbons [δC 16.6 (4-Me), 17.1 (6-Me), 11.6 (8-Me), 21.0 (10-Me)], two methylene carbons [δC 39.0 (C-11), 33.9 (C-12)] and three methine carbons [δC 37.2 (C-6), 82.2 (C-7), 31.9 (C-10)]. The 1D and 2D NMR data (Table 1) indicated that compound 2 shares a similar core structure with compound 1, featuring a polyene side chain connected to a benzene ring. The major structural differences lie in the presence of an additional olefinic double bond in compound 2 and the conversion of the aldehyde group at C-1 in compound 1 to a carboxylic acid in compound 2. The 1H NMR signals at δH 5.80 (d, J = 15.6 Hz, H-2) and 7.42 (d, J = 15.6 Hz, H-3), along with the large coupling constants, indicate the presence of an E-olefinic double bond. Notably, the HMBC correlation (Fig. 3) from H-3 to C-4 and C-5 supports the existence of a 2,4-conjugated diene fragment. Additionally, the HMBC correlations from H-2 and H-3 to C-1 (δC 171.60) indicate that this diene moiety is directly attached to a carboxyl group. Furthermore, the HMBC correlation between H-12 and C-13 confirms the attachment of the phenyl ring at C-12. Based on biosynthetic pathway analysis, it is inferred that compound 2 shares the same absolute configuration as compound 1 and phenalamide A2,19 namely 4R, 5R, and 8S (Fig. S1). Therefore, compound 2 was ultimately identified and named prophenalamide E.
Compound 3 was obtained as a colorless resinous solid. Its molecular formula was as C33H47NO4 based on HR-ESI-MS data, which show a quasi-molecular ion peak at m/z 522.3577 [M + H]+ (calcd. 522.3583). The IR spectrum exhibited diagnostic absorptions for an amino (3350 cm−1), a carbonyl or amide group (1728, 1653 and 1535 cm−1), a benzene ring (1456 and 775 cm−1), suggesting the presence of an amide-bearing benzenoid structure.27
The 1H NMR spectrum (Table 2) displayed characteristic signals of five benzene ring protons [δH 7.20 (2H, d, J = 7.2 Hz, H-21, 25), 7.23–7.28 (2H, m, H-22, 24), and 7.15 (1H, t, J = 7.2 Hz, H-23)], six methyl signals[δH 1.99 (3H, s, 2-Me), 1.35 (3H, s, 10-Me), 0.92 (3H, d, J = 6.8 Hz, 12-Me), 1.61 (3H, d, J = 1.4 Hz, 14-Me), 0.99 (3H, d, J = 6.5 Hz, 16-Me), 1.19 (3H, d, J = 6.8 Hz, 1′-Me)], four methylene groups at δH 1.66–1.73 (2H, m, H-17), 2.56–2.70 (4H, m, H-18, 19), and 3.50–3.58 (2H, m, H-2′), five methine protons at δH 3.87 (1H, d, J = 4.5 Hz, H-11), 2.26–2.33 (1H, m, H-12), 4.12 (1H, d, J = 10.9 Hz, H-13), 2.46–2.51 (1H, m, H-16), and 4.04–4.08 (1H, m, H-1′), and eight olefinic proton signals δH 6.93 (1H, d, J = 9.4 Hz, H-3), 6.54–6.61 (2H, m, H-4, 5), 6.38–6.48 (2H, m, H-6, 7, 8), 6.01 (1H, d, J = 14.7 Hz, H-9), and 5.30 (1H, d, J = 9.3 Hz, H-15). The 13C NMR spectra (Table 2) revealed a total of 32 carbon atoms, including one carbonyl carbon at 171.8 (C-1), six benzene carbons [δC 143.9 (C-20), 129.5 (C-21), 129.3 (C-22), 126.7 (C-23), 129.3 (C-24), 129.5 (C-25)], ten olefinic carbons [δC 131.1 (C-2), 135.1 (C-3), 139.1 (C-4), 128.7 (C-5), 129.9 (C-6), 133.2 (C-7), 136.7 (C-8), 139.6 (C-9), 133.6 (C-14), 137.0 (C-15)], six methyls [δC 13.1 (2-Me), 26.9 (10-Me), 10.2 (12-Me), 11.3 (14-Me), 21.5 (16-Me), 17.1 (1′-Me)], four methylenes [δC 40.6 (C-17), 40.8 (C-18), 34.8 (C-19), 66.1 (C-2′)], five methines [δC 87.1 (C-11), 41.6 (C-12), 91.6 (C-13), 33.0 (C-16), 49.0 (C-1′)], and a quaternary carbon [δC 81.5 (C-10)]. A comparison of the 1D and 2D NMR data (Table 2 and Fig. 5) revealed that the structure of compound 3 is closely related to that of the known phenalamid C (5).19 The only notable difference observed was the presence of an additional methylene unit [δH 2.55–2.70 (2H, m, H-19)] in the side chain terminating in the benzene ring of compound 3, as indicated by the molecular formula and NMR data. The connectivity of the key structural fragments was established by the 1H–1H COSY spectrum (Fig. 4), such as H-3/H-4, H-8/H-9, H-12/H-13, and H-15/H-16, H-16/H-17, H-17/H-18, H-18/H-19. Regarding the polyene chain, HMBC correlations from H-3 to C-4, H-5 to C-6, and H-7 to C-8, combined with the extensive olefinic proton signals, confirmed the presence of a conjugated tetraene system (Δ2,4,6,8) anchored to the C-1 carbonyl. An all-E configuration was assigned to this polyene chain based on the large coupling constants (J8,9 = 14.7 Hz) and supporting NOESY correlations (Fig. 4).
| Position | 3 | Position | 4 | ||
|---|---|---|---|---|---|
| δC | δH (J in Hz) | δC | δH (J in Hz) | ||
| a 1H NMR spectra measured at 600 MHz, 13C NMR spectra measured at 150 MHz. ‘*’ represents that the space left out corresponds to other similar signals of another compound. | |||||
| 1 | 171.8 | — | 1 | 171.8 | — |
| 2 | 131.1 | — | 2 | 131.3 | — |
| 3 | 135.1 | 6.93, d (9.4) | 3 | 135.0 | 6.93, d (9.4) |
| 4 | 139.1 | 6.54–6.61, m | 4 | 139.4 | 6.56–6.59, m |
| 5 | 128.7 | 6.54–6.61, m | 5 | 128.9 | 6.60, d (14.7) |
| 6 | 129.9 | 6.38–6.48, m | 6 | 129.0 | 6.39, d (14.7) |
| 7 | 133.2 | 6.38–6.48, m | 7 | 133.3 | 6.41–6.45, m |
| 8 | 136.7 | 6.38–6.48, m | 8 | 136.5 | 6.41–6.45, m |
| 9 | 139.6 | 6.01, d (14.7) | 9 | 142.1 | 5.97, d (14.7) |
| 10 | 81.5 | — | 10 | 83.7 | — |
| 11 | 87.1 | 3.87, d (4.5) | 11 | 85.1 | 3.66, d (9.4) |
| 12 | 41.6 | 2.26–2.33, m | 12 | 43.7 | 2.00–2.04, m |
| 13 | 91.6 | 4.12, d (10.9) | 13 | 89.4 | 3.86, d (9.8) |
| 14 | 133.6 | — | 14 | 133.6 | — |
| 15 | 137.0 | 5.30, d (9.3) | 15 | 137.0 | 5.31, d (9.3) |
| 16 | 33.0 | 2.46–2.51, m | 16 | 33.0 | 2.43–2.50, m |
| 17a | 40.6 | 1.66–1.73, m | 17a | 40.5 | 1.54–1.60, m |
| 17b | 1.66–1.73, m | 17b | 1.65–1.72, m | ||
| 18a | 40.8 | 2.64–2.70, m | * | — | — |
| 18b | 2.64–2.70, m | ||||
| 19a | 34.8 | 2.64–2.70, m | 18a | 34.8 | 2.64–2.69, m |
| 19b | 2.56–2.62, m | 18b | 2.54–2.61, m | ||
| 20 | 143.9 | — | 19 | 143.9 | — |
| 21 | 129.5 | 7.20, d (7.2) | 20 | 129.4 | 7.19, d (7.2) |
| 22 | 129.3 | 7.23–7.28, m | 21 | 129.3 | 7.23–7.28, m |
| 23 | 126.7 | 7.15, t (7.2) | 22 | 126.6 | 7.15, t (7.2) |
| 24 | 129.3 | 7.23–7.28, m | 23 | 129.3 | 7.23–7.28, m |
| 25 | 129.5 | 7.20, d (7.2) | 24 | 129.4 | 7.19, d (7.2) |
| 2-Me | 13.1 | 1.99, d (1.4) | 2-Me | 13.1 | 1.99, s |
| 10-Me | 26.9 | 1.35, s | 10-Me | 22.3 | 1.29, s |
| 12-Me | 10.2 | 0.92, d (6.8) | 12-Me | 13.9 | 0.99, d (6.5) |
| 14-Me | 11.2 | 1.61, d (1.4) | 14-Me | 11.3 | 1.63, s |
| 16-Me | 21.5 | 0.99, d (6.8) | 16-Me | 21.4 | 0.98, d (6.5) |
| 1′-Me | 17.1 | 1.20, d (6.8) | 1′-Me | 17.1 | 1.19, d (6.8) |
| 1′ | 49.0 | 4.04–4.08, m | 1′ | 49.8 | 4.04–4.09, m |
| 2′ | 66.1 | 3.50–3.58, m | 2′ | 66.1 | 3.50–3.58, m |
By comparing the NMR data with literature values and considering their biogenetic relationship,19,28,29 the absolute configuration of compound 3 was established as 12R, 13R, 16S. This assignment relies on the biogenetic consistency typically observed in myxobacterial secondary metabolites, where structurally related compounds originating from conserved biosynthetic pathways maintain stereochemical uniformity.19,28,29
Given that the epoxide ring imparts a rigid conformational framework to this local region, precedents in the literature have successfully determined the configuration of the epoxide moiety using NOE analysis.30 Within this conformationally constrained system, the coupling constant J11,12 = 4.5 Hz and the distinct H-11/H-12 NOESY correlation confirmed a gauche conformation between these two protons in compound 3.31 Based on this spatial arrangement and the defined 12R configuration, the relative configuration of C-11 was unambiguously assigned as 11R*. Subsequently, a key NOESY correlation between 10-Me and 12-Me, evaluated within the context of the 11R*, 12R stereocenters, allowed the relative configuration at C-10 to be deduced as 10S*. Consequently, based on the comprehensive spectroscopic analysis and biogenetic analysis, compound 3 was assigned as 10S*, 11R*, 12R, 13R, 16S and named phenalamide F.
Compound 4 was obtained as a colorless resinous solid. Its molecular formula was determined to be C32H47NO5 based on HR-ESI-MS data, which showed ion peaks at m/z 564.3087 [M + K]+ (calcd. 564.3091). The IR spectrum exhibited characteristic absorptions for an amino (3380 cm−1), a carbonyl (1728, 1636 and 1521 cm−1), a benzene ring (1454 and 771 cm−1).27 The 1H NMR spectrum (Table 2) displayed characteristic signals of five benzene ring protons [δH 7.19 (2H, d, J = 7.2 Hz, H-20, 24), 7.23–7.28 (2H, m, H-21, 23), and 7.15 (1H, t, J = 7.2 Hz, H-22)], six methyl signals[δH 1.99 (3H, s, 2-Me), 1.29 (3H, s, 10-Me), 0.99 (3H, d, J = 6.5 Hz, 12-Me), 1.63 (3H, s, 14-Me), 0.98 (3H, d, J = 6.5 Hz, 16-Me), 1.19 (3H, d, J = 6.8 Hz, 1′-Me)], three methylene groups at δH 1.54–1.72 (2H, m, H-17), 2.54–2.69 (2H, m, H-18), and 3.50–3.58 (2H, m, H-2′), five methine protons at δH 3.66 (1H, d, J = 9.4 Hz, H-11), 2.00–2.04 (1H, m, H-12), 3.86 (1H, d, J = 9.8 Hz, H-13), 2.43–2.50 (1H, m, H-16), and 4.04–4.09 (1H, m, H-1′), and eight olefinic proton signals δH 6.93 (1H, d, J = 9.4 Hz, H-3), 6.56–6.59 (1H, m, H-4), 6.60 (1H, d, J = 14.7 Hz, H-5), 6.39 (1H, d, J = 14.7 Hz, H-6), 6.41–6.45 (1H, m, 2H, H-7, 8), 5.97 (1H, d, J = 14.7 Hz, H-9), and 5.31 (1H, d, J = 9.3 Hz, H-15). The 13C NMR spectra (Table 2) revealed a total of 32 carbon atoms, including one carbonyl carbon at 171.8 (C-1), six benzene carbons [δC 143.9 (C-19), 129.4 (C-20), 129.3 (C-21), 126.6 (C-22), 129.3 (C-23), 129.4 (C-24)], ten olefinic carbons [δC 131.3 (C-2), 135.0 (C-3), 139.4 (C-4), 128.9 (C-5), 129.0 (C-6), 133.3 (C-7), 136.5 (C-8), 142.1 (C-9), 133.6 (C-14), 137.0 (C-15)], six methyls [δC 13.1 (2-Me), 22.3 (10-Me), 13.9 (12-Me), 11.3 (14-Me), 21.4 (16-Me), 17.1 (1′-Me)], three methylenes [δC 40.5 (C-17), 34.8 (C-18), 66.8 (C-2′)], five methines [δC 85.1 (C-11), 43.7 (C-12), 89.4 (C-13), 33.0 (C-16), 49.8 (C-1′)], and a quaternary carbon [δC 83.7 (C-10)]. Compound 4 possesses a planar structure closely related to phenalamide A2,16 distinguished primarily by the oxidation of the C-10/C-11 fragment. NMR analysis further confirmed that the Δ10 olefinic unsaturation in phenalamide A2 has been replaced by a vicinal diol functionality in compound 4, as evidenced by the diagnostic upfield shifts of the C-10 and C-11 signals [δC 83.7 (C-10), 85.1 (C-11)], which are characteristic of the oxymethines in the 10,11-diol system. Given the highly conserved biosynthetic substitution pattern within this class of compounds,19,28,29 a comprehensive 1D and 2D NMR comparison with phenalamide A2, 3, and 5 initially allowed the absolute configuration of 4 to be assigned as 12R, 13R, 16S.
Mechanistically, the epoxidation of a vicinal diol proceeds via mono-activation followed by a stereospecific intramolecular SN2 displacement.31–34 This cyclization inherently dictates strict Walden inversion at the electrophilic carbon and retention at the nucleophilic oxygen.31–34 In this study, the structure of 4 differs from 3 primarily by the presence of an acyclic C-10/C-11 vicinal diol rather than an epoxide ring. Within this mechanistic context, compound 3 is postulated to be the biosynthetic cyclization product of the diol precursor 4. To unambiguously determine the regioselectivity of this nucleophilic attack (i.e., whether C-10 or C-11 acts as the electrophile), comparative NMR data were rigorously analyzed. The coupling constant shifted dramatically from a small J11,12 = 4.5 Hz in the rigid epoxide 3 to a large J11,12 = 9.4 Hz in the acyclic diol 4, strongly indicating a highly preferred anti-periplanar conformation31 between H-11 and H-12 in the latter. Despite the inherent conformational flexibility of the acyclic diol moiety, this large J11,12 coupling, combined with the diagnostic 10-Me/12-Me NOESY correlation and the previously established 12R stereocenter, securely restricts the relative configuration at C-11 in 4 to be 11S*.
The establishment of an 11S* geometry in 4, contrasting with the 11R* configuration in the rigid epoxide 3, provides compelling evidence for a strict Walden inversion during the epoxidation event Fig. 5. This stereochemical outcome mechanistically dictates that the 10-OH group executes a backside nucleophilic attack on the activated C-11. Because the oxygen atom serves as the nucleophile, the C–O bond at C-10 remains intact, allowing this stereocenter to inherently retain its configuration as 10S*.
Integrating this robust spectroscopic evidence with the mechanistic rationale, the configuration of the diol fragment in 4 was unequivocally deduced as 10S*, 11S*, 12R, 13R, 16S. Consequently, compound 4 was identified and designated as phenalamide G.
In the mycelial growth inhibition assay (Table 3), the EC50 values of cystothiazole A against F. sacchari 9DF-3-2 and FS-1-2 were 3.01 µg mL−1 and 9.71 µg mL−1, respectively. At lower concentrations, both cystothiazole A and melithiazol F exhibited more potent inhibition than carbendazim. In the spore germination inhibition assay (Table 3), cystothiazole A demonstrated the most powerful effect, with EC50 values of 1 µg mL−1 for F. sacchari 9DF-3-2 and 0.67 µg mL−1 for FS-1-2, significantly outperforming carbendazim across all tested concentrations. The EC50 values of melithiazol F were 2.94 µg mL−1 and 1.08 µg mL−1, respectively. While its effect was comparable to that of carbendazim at lower concentrations, it was significantly stronger at higher concentrations. Additionally, microscopic observations (Fig. 6) revealed that spores treated with DMSO exhibited swelling, radial elongation, and gradual germ tube extension. In contrast, spores treated with cystothiazole A and melithiazol F remained in an ovoid dormant state, showing no signs of germination.
| Compounds | Spore germination | Mycelial growth | ||
|---|---|---|---|---|
| 9DF-3-2 | FS-1-2 | 9DF-3-2 | FS-1-2 | |
| a Results are expressed as EC50 values in µg mL−1. Carbendazim was used as positive control (n = 3, with 100 spores observed per replicate). | ||||
| Cystothiazole A | 1.00 ± 0.23 | 0.67 ± 0.34 | 3.01 ± 0.20 | 9.71 ± 1.22 |
| Melithiazol F | 2.94 ± 0.45 | 1.08 ± 0.35 | >200 | >200 |
| Carbendazim | >200 | >200 | 0.31 ± 0.14 | 0.38 ± 0.17 |
The results indicate that cystothiazole A induced a significant, concentration-dependent increase in nucleic acid leakage in both F. sacchari strains. While the effect was negligible at 1 µg mL−1 compared to the negative control, treatment at 10 µg mL−1 and 100 µg mL−1 resulted in a marked increase in leakage, reaching maximum absorbance values of 0.48 for strain 9DF-3-2 and 0.38 for strain FS-1-2 at the highest concentration. In contrast, melithiazol F exhibited strain-specific effects. It showed minimal impact on nucleic acid leakage in strain 9DF-3-2 but induced a concentration-dependent increase in strain FS-1-2, with a peak absorbance of 0.39 at 100 µg mL−1.
Regarding protein leakage, both compounds showed moderate effects (Fig. 7). In all treated groups, protein leakage increased slightly, but the change was not statistically significant. This differential leakage pattern, significant release of nucleic acids (absorbing at 260 nm) with limited protein efflux, suggests that these compounds may compromise membrane barrier function selectively or partially, rather than causing complete cell lysis. Such an effect could be attributed to alterations in membrane permeability, the formation of specific pores, or localized membrane damage, which permits the efflux of certain intracellular materials while retaining larger protein complexes, or potentially reflects the activation of fungal stress response and repair mechanisms.
:
0 to 50
:
50, v/v), followed by a methanol wash. Thin-layer chromatography (TLC) analysis resulted in nine fractions, designated Ms-1 to Ms-9.
Fraction Ms-3 (0.63 g) was dissolved in chloroform containing a small amount of methanol and concentrated under reduced pressure to near saturation, allowing crystals to form. The crystals were collected by filtration and purified by HPLC (acetonitrile–water, 80
:
20, v/v) to yield compounds 7 (88.8 mg, 0.444% yield) and 8 (2.4 mg, 0.012% yield).
Fraction Ms-4 (0.26 g) was separated by HPLC (ODS, acetonitrile-water 75
:
25), yielding subfractions Ms-4-1 to Ms-4-5. Subfractions Ms-4-4 and Ms-4-5 were further purified by preparative TLC (petroleum ether: acetone: methanol 95
:
5
:
1), resulting in compounds 9 (134.6 mg, 0.673% yield) and 6 (3.2 mg, 0.016% yield).
Fraction Ms-5 (1.08 g) was fractionated using MPLC (ODS, methanol–water 50
:
50 to 100
:
0), yielding subfractions Ms-5-1 to Ms-5-8. Subfraction Ms-5-4 (248.3 mg) was further separated by HPLC (ODS, acetonitrile-water = 70
:
30) and purified by preparative TLC (dichloromethane: methanol = 98
:
2) to yield compounds 1 (15.0 mg, 0.075% yield) and 2 (4.33 mg, 0.022% yield).
Fraction Ms-6 (3.35 g) was separated using MPLC (ODS, acetonitrile-water 50
:
50 to 100
:
0), yielding subfractions Ms-6-1 to Ms-6-9. Subfraction Ms-6-4 (590.0 mg) was further purified by HPLC (ODS, acetonitrile-water 65
:
35) to obtain compounds 3 (7.8 mg, 0.039% yield), 4 (7.5 mg, 0.038% yield), and 5 (15.0 mg, 0.075% yield).
Fraction Ms-8 (3.01 g) was dissolved in methanol and filtered to obtain Ms-8M, which was then fractionated using MPLC (ODS, methanol–water 5
:
95 to 40
:
60) into subfractions Ms-8-1 to Ms-8-11. Subfraction Ms-8-5 was further separated by HPLC (ODS, acetonitrile-water 70
:
30) into subfractions Ms-8-5-1 to Ms-8-5-6. Subfraction Ms-8-5-1 (34.3 mg) was purified by recrystallization: the sample was dissolved in methanol, concentrated under reduced pressure to near saturation, allowed to crystallize, filtered, and washed with a small amount of methanol to yield compound 10 (13 mg, 0.065% yield). Subfraction Ms-8-5-3 was identified as compound 12 (13.8 mg, 0.069% yield). Subfractions Ms-8-5-5 (23.2 mg) and Ms-8-5-4 (13.0 mg) were purified by preparative TLC (dichloromethane: methanol 9
:
1) to obtain compounds 11 (19.1 mg, 0.096% yield) and 13 (6.5 mg, 0.033% yield), respectively.
The isolation yields for the major metabolites (5, 7, 10) were satisfactory, reflecting their high abundance in the crude extract. In contrast, the minor compounds (1–4, 6, 8, 9) were obtained in low yields, a common challenge attributed to their low natural titers and multi-step purification losses. Nevertheless, these yields were deemed sufficient for the primary objective of this study, which was the complete structural elucidation and characterization of the isolates. While future optimization of fermentation and purification could enhance yields, the current discovery-oriented approach proved effective.
:
100 ratio, yielding final concentrations of 0.02–200 µg mL−1. Cultures were incubated at 28 °C and 180 rpm for 8 h. Germination was assessed microscopically, with a spore defined as germinated when the germ tube length exceeded its short-axis diameter. At least 100 spores were counted in triplicate per treatment. DMSO and carbendazim served as negative and positive controls, respectively.
:
100 ratio to obtain final concentrations of 0.02–200 µg mL−1. The medium was poured into plates and allowed to solidify. A 5 mm Fusarium sacchari mycelial plug, excised from the margin of a 7 day-old colony, was placed inverted at the center of each plate. Carbendazim and DMSO served as positive and negative controls, respectively. The treatments were performed in triplicate, and the plates were incubated at 26 °C for five days. Colony diameters for each treatment were measured using the cross-intersection method, and the inhibition rate was calculated as the percentage reduction in colony diameter of the treatment group relative to the negative control, with 0.5 cm (the diameter of the inoculated mycelia) subtracted from both measurements.
000 rpm for 2 min. Spores in the remaining supernatant were resuspended in sterile PBS and adjusted to 107–108 spores per mL. A 12 mL aliquot was mixed with 120 µL of compound stock solution to final concentrations of 1, 10, and 100 µg mL−1. At 0, 3, 6, 9, and 12 h, 2 mL samples were collected and centrifuged (10
000 rpm, 2 min), and the supernatant was used for leakage assays. Pellets were used for microscopic observation. Coomassie Brilliant Blue G-250 reagent was prepared by dissolving 20 mg of dye in 10 mL of 95% ethanol, adding 24 mL of 85% phosphoric acid, and diluting to 200 mL with water. For nucleic acids, 1 mL of the supernatant was read at 260 nm; for proteins, 1 mL was mixed with 5 mL of dye reagent and read at 595 nm after 2–5 min. DMSO served as the negative control, and all the treatments were performed in triplicate.
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