Open Access Article
Suresh Patagania,
Kolli Balakrishna*a,
Mahadevappa Naganathappab,
Dhilli Rao Gorjac,
Naresh Kumar Katari
*df,
Vani Madhuri Velavalapalli
e and
Rambabu Gundla*e
aDepartment of Chemistry, School of Science, GITAM (Deemed to be University), Vishakhapatnam-530045, India. E-mail: bkolli@gitam.edu
bDepartment of Physics, School of Science, GITAM (Deemed to be University), Hyderabad-502329, India
cDepartment of Chemistry, Texila American University, Georgetown, Guyana
dSchool of Chemistry & Physics, College of Agriculture, Engineering & Science, Westville Campus, University of KwaZulu-Natal, P Bag X 54001, Durban 4000, South Africa. E-mail: KatariN@ukzn.ac.za; dr.n.k.katari@gmail.com
eDepartment of Chemistry, GITAM School of Science, GITAM Deemed to be University, Hyderabad, Telangana-502329, India
fA&B Laboratories (An AmSpec Group of Company), 10100 East Freeway, Suite 100, Houston, TX 77029, USA
First published on 18th May 2026
Fifteen new phenylcyclopropane-carbohydrazide-containing furan derivatives are synthesised and thoroughly characterized using FT-IR, 1H-NMR, 13C-NMR, and HRMS spectroscopy techniques in the search for new anticancer drugs. Using the MTT assay, this work examines the antiproliferative capability of these newly synthesized phenylcyclopropane hybrid compounds against cancer cell lines of the liver (HepG-2), lung (A549), and breast (MCF-7 and MDA-MB-231). Results indicated that with IC50 values of 2.08 ± 0.45, 2.15 ± 0.29, 2.17 ± 0.13, and 3.10 ± 0.32 µM for the MCF-7 cell line, compounds 8e, 8i, 8m, and 8n with p-dimethylamino, p-methoxy, p-hydroxy, and p-chloro-o-methoxy groups, respectively, showed the strongest antiproliferative activity, surpassing the reference drug doxorubicin in some cases. Among the synthesized compounds, 8e, 8j, 8m and 8n were the most active compounds with the EGFRWT inhibitory effect, exhibiting IC50 values of 1.79 ± 0.10, 1.59 ± 0.03, 0.87 ± 0.08, and 0.90 ± 0.60 µM, respectively. Molecular docking studies against the human breast cancer therapy compound and epidermal growth factor receptor (EGFR) (PDB codes: 3HB5 & 1M17) revealed that the furan derivatives exhibited excellent binding affinity (−10.70 and −8.54 kcal mol−1) through favorable van der Waals, electrostatic, HB-bonding and CH-bonding interactions within the active site. Furthermore, the ADME-T (absorption, distribution, metabolism, excretion, and toxicity) profiling of the synthesized compounds revealed balanced pharmacokinetic profiles and favorable drug-like features, confirming their potential as viable candidates for additional pharmaceutical development. The established procedure is a promising solution for a variety of applications since it uses low-toxic cyclopropane-1-carbohydrazide, furan with a broad substrate scope, and readily available substrates and requires only a short reaction time. Molecule 8n is the most stable conformer among all the compounds optimized at the B3LYP/6-31G level, with significant variations observed in the dipole moments and HOMO–LUMO gaps affecting their stability and reactivity.
296
840 cases of breast cancer, which led to 666
103 fatalities.2 Numerous individuals in India have advanced stages of different types of cancer, according to the National Cancer Registry Programme (NCRP) reports: 57.6% for the breast, 60.0% for the cervix, 66.6% for the head and neck, and 50.8% for the stomach. Additionally, it was found that the incidence of distant metastases in lung cancer was gender-based, with 47.6% of cases occurring in females and 44.0% in males.3 Malignancies are likely to develop in both sexes equally. Prostate and colon cancers are frequent in men, while breast, cervix, and lung cancers are common in women.4 It is crucial to develop innovative anticancer treatments that can specifically target malignant cells and successfully inhibit their growth in light of the rising incidence of cancer.
Because of its rising mortality rate, breast cancer is becoming one of the deadliest cancers in the world. The discovery of novel therapeutic targets and the subsequent development of numerous potent chemotherapeutic medications have been made possible by a thorough understanding of the molecular biology of breast cancer. However, the significant side effects of current chemotherapies, multidrug resistance, and metastatic breast cancer (MBC) remain important obstacles to disease treatment. As a result, research on new medications is still in progress.5 For many anticancer drugs on the market today, tyrosine kinases are the most researched therapeutic targets.6 The epidermal growth factor receptor (EGFR), a kind of tyrosine kinase membrane receptor, triggers a signaling cascade that controls cellular processes, such as angiogenesis, migration, differentiation, and proliferation, through ligand-induced dimerization. EGFR overexpression and oncogenic mutations in its catalytic domain have a major impact on the development of cancer and multidrug resistance. Most solid tumors, including breast, colorectal, and non-small cell lung cancer (NSCLC), overexpress the EGFR. Inhibiting EGFR expression and function is therefore a key focus in anticancer research according to studies.7
Cyclopropane is a common minor chemical compound in medications and natural goods.8 One structurally stable bio isostere that can be used to swap out carbon–carbon double bonds is cyclopropane. Among its effects are increased medication efficacy, improved metabolic stability, decreased off-target effects, increased degree of drug dissociation, and increased receptor affinity.9,10 As a result, drug design makes extensive use of it. Cyclopropane-containing compounds have biological and pharmacological effects, such as anticancer,11 antiviral,12 antibacterial,13 antifungal,14 antidepressant15 and antioxidant.16 Because of their high biological activity, heterocyclic molecules are essential in organic and medical chemistry. Due to their presence in a variety of contemporary medicinal agents, furan (a five-membered ring containing an oxygen heteroatom) and its derivatives are pharmacologically significant and serve as essential building blocks for the development of novel drugs.17 Numerous biological activities, such as anticancer, antibacterial, antiviral, analgesic, anti-inflammatory, antioxidant, antihyperglycemic, anticonvulsant, antihypertensive, antitubercular, antidepressant, and antifungal properties, are possessed by compounds with a furan ring.18–20 Consequently, because of their biological activity and low toxicity, molecules with phenylcyclopropane carbohydrazide and furan structures have drawn a lot of attention. Compared to medications containing biphenyl amide analogues, those containing aliphatic cyclic amide analogues have shown greater anticancer efficacy in colon, breast, and melanoma cell lines.21
A variety of phenylcyclopropane carbohydrazides and furan derivatives were designed, synthesised, and tested against breast cancer cell lines, including MCF-7, MDA-MB-231 (breast cancer), A549 (lung cancer), and HepG-2 (liver cancer), to build on the strong activity observed in phenylcyclopropane derivatives. To optimize these medications, computational methods, including pharmacokinetic predictions (ADMET), docking simulations, and molecular modelling, are crucial. The hybridization approach has several disadvantages, such as complicated synthesis, pharmacokinetic problems, higher molecular weight, possible toxicity, and doubts regarding efficacy.22 Additionally, molecular docking studies have shown that these substances can attach to protein targets linked to cancer, including kinases and cell cycle-related enzymes. This research not only aims to contribute to the development of anticancer drugs but also seeks to provide valuable insights into the design of hybrid compounds with enhanced pharmacological properties (Fig. 1).
The synthesis of 1-phenylcyclopropane-1-carbohydrazide was carried out in three steps. In order to create phenylcyclopropane-1-carbonitriles (2a, 2b), 2-phenyl acetonitrile (1a, 1b) was first refluxed with 1,2-dibromoethane in water (20 mL) containing sodium hydroxide and TBAB (tetrabutylammonium bromide) for 5–7 hours. The second phase involved refluxing substituted carbonitriles (2) with dil. HCl in 10 mL of water for 4–5 hours at 90 °C. This was followed by neutralization with sodium carbonate, filtration, and cold water washing. Flash column chromatography was used to purify the final products (3a and 3b), which were then crystallized in methanol. Furthermore, a condensation reaction between hydrazide and 1-phenylcyclopropane-1-carboxylic acids is aided by a base catalyst. DIPEA (N,N-diisopropylethylamine) and K2CO3 (potassium carbonate) are two alkaline reagents used to aid in this condensation. Key intermediates (4a and 4b) are produced by the reaction, which takes place in a DMF solvent at 70–80 °C for 12 hours (Scheme 1). The synthesis of furan-based compounds 7a–o is shown in Scheme 2. Furan-3-carboxylic acid (5) was used to synthesize the primary starting intermediate 2-bromo-4-phenylfuran (7a–o), followed by 5-bromofuran-3-carboxylic acid (6). 5-Bromofuran-3-carboxylic acid (6) was produced by the substituted reaction of furan-3-carboxylic acid (5) with HBr in the presence of acetic acid in pyridine. Additionally, 2-bromo-4-phenylfurans (7a–o) were generated via the C–C bond synthesis of 6 with matching iodobenzene in the presence of Cs2CO3 (cesium carbonate) and Pd(dppf)Cl2([1,1′-Bis(diphenylphosphino)ferrocene]dichloropalladium(II)) catalyst in mesitylene at 150 °C for 12 hours.
Different substituted 2-bromo-4-phenylfurane compounds (7a–o) are coupled with two distinct substituted 1-phenylcyclopropanecarbohydrazide derivatives (4a, 4b), which were previously prepared (Scheme 3). The synthetic methods used to create different targets are shown in Fig. 2. Several bases and solvents were used in our C–N coupling reaction experiment. We initially attempted a coupling reaction between 4a and 7a to obtain 8a. A nucleophilic aromatic substitution mechanism drives the process. With the help of the various substituents, the nitrogen atom of 1-phenylcyclopropanecarbohydrazide targets the aromatic ring's electron-deficient carbon in 2-bromo-4-phenylfurane, forming the desired molecules. Using various solvents, bases, temperatures, and reaction periods, the optimization of the reaction conditions for the synthesis of compounds 8a was methodically investigated (Table 1). The findings showed that temperature, base, and solvent selection had a significant impact on the reaction yield and product formation. Initial attempts to synthesise compound 8a using water and NaHCO3 in DMF at room temperature (RT) (entry 1) produced yields of 38% even after 7 hours. However, employing NaHCO3 as the base in DMF (entry 2) and conducting the reaction in a pressure reactor at 50 °C resulted in a notable improvement, producing compound 8a in a low yield of 46% in 7 hours. Similarly, a low yield of 40% was obtained when the base was changed to NaH in DMF and water was utilized at RT (entry 3), demonstrating weak reactivity under these conditions. Additionally, preliminary experiments employing NaH in DMSO at 40–50 °C for the production of compound 8a produced modest to good yields (entries 4 and 5). When Na2CO3 was utilized as the base at RT for seven hours (entry 6), the yield increased, emphasizing the significance of strong base Na2CO3 conditions and a moderate temperature for effective product production. When Na2CO3 was added to DMSO at 40 °C for seven hours (entry 7), a high yield product was formed; however, a tarry substance was occasionally formed. The reaction results emphasize that under these conditions, Na2CO3 works better than NaH. In the synthesis of compound 8a, the reaction proved challenging under various conditions. Interestingly, a breakthrough was achieved when the reaction was conducted at 40 °C with K2CO3 as the base in 1,4-dioxane (entry 8), which afforded an 84% yield after 7.5 h. However, the reaction with K2CO3 under similar conditions produced the product in an excellent yield (entry 9, 88%).
| Entry | Reactants | Solvent | Baseb | Time (h) | Temp (°C) | Yields (%) | |
|---|---|---|---|---|---|---|---|
| a Reactions on a 2.8 mmol scale of reactants 4a and 7a.b 4.2 mmol.c Isolated yield of pure products. | |||||||
| 1 | 4a | 7a | DMF/H2O | NaHCO3 | 7 | 27 | 38 |
| 2 | 4a | 7a | DMF/H2O | NaHCO3 | 7 | 50 | 46 |
| 3 | 4a | 7a | DMF/H2O | NaH | 8 | 27 | 40 |
| 4 | 4a | 7a | DMSO/H2O | NaH | 8 | 40 | 50 |
| 5 | 4a | 7a | DMSO/H2O | NaH | 8 | 50 | 58 |
| 6 | 4a | 7a | DMSO/H2O | Na2CO3 | 7 | 27 | 63 |
| 7 | 4a | 7a | Dioxane/H2O | Na2CO3 | 7 | 40 | 70 |
| 8 | 4a | 7a | Dioxane/H2O | K2CO3 | 7.5 | 40 | 84 |
| 9 | 4a | 7a | Dioxane/H2O | K2CO3 | 8 | 40 | 88c |
The synthetic phenylcyclopropane-1-carbohydrazides (8a–o) were characterized by 1H-NMR, 13C-NMR, IR and HRMS spectroscopic methods. Compound 8a's 1H-NMR spectra showed two distinct NH proton signals as singlets at δ 10.40 and 8.41 ppm. In the 1H-NMR spectrum, the furan protons were detected at δ 7.84 and 6.88 ppm, and two doublets were ascribed to p-methyl phenyl protons at δ 7.72 and 7.60. The 1H-NMR spectra of compound 8a revealed cyclopropane protons at δ 1.70–1.88, while aromatic signals ranged from δ 7.32 to 7.37. Aromatic carbon signals between δ 144.05 and 108.21 were observed in compound 8a. The ketone carbonyl carbon is responsible for the signal at δ 182.51. δ 32.55 and 16.39 ppm were the measured values for this cyclopropyl group. In the 13C-NMR spectra, the phenyl ring connected to the methyl moiety showed a resonance signal at 21.44 ppm. For sp2 C–H bonds, the synthesised cyclopropane derivative (8a) shows a significant stretching frequency of approximately 3150 cm−1, while for sp3C–H bonds, the stretching frequency was 2923 cm−1. The stretching frequencies of the ether (COC) and carbonyl (C
O) groups are 1164 cm−1 and 1682 cm−1, respectively. Between 1510 and 1610 cm−1, more noteworthy stretching frequencies for the C
C bonds are discovered. Doublet signals at δ 6.89 and 7.37 for dimethyl amino phenyl and 7.74 and 8.18 ppm for nitrophenyl protons in the 1H-NMR spectrum indicate that compound 8l has p-substituted phenyl rings. Although the other two singlets appeared for the furan ring at δ 7.88 and 6.58 ppm, respectively, the proton signals corresponding to NH were between δ 10.48 and 8.35 ppm. However, compound 8l, which has a cyclopropyl ring, displayed dimethyl amino protons as a singlet at δ 2.93 and methylene protons at δ 1.52–1.71. Aromatic carbon signals were detected in the δ 154.07–107.09 ppm range of the 13C-NMR spectra. The ketone carbonyl, coupled with a saturated system, has been reported to show a 13C-NMR signal at about δ 181.20 ppm. The ([M + H]+) ion peak, which corresponds to the chemical formula C22H22N4O4, is observed at m/z = 407.1385 according to the mass spectrum characterization of molecule 8l.
| Entry | Cytotoxicity IC50 (µM)a | EGFRWT (IC50, µM)b | |||
|---|---|---|---|---|---|
| MCF-7 | MDA-MB-231 | A549 | HepG-2 | ||
| a IC50 values of the in vitro anti-proliferative activities of the tested compounds against MCF-7, MDA-MB-231, A549 and HepG2 cell lines from three independent experiments.b 50% Inhibition of EGFR activity; NT: compounds not tested. NC, noncytotoxic. IC50 > 50 µM denoted as noncytotoxic; these results were expressed as mean value ± standard deviation (SD). | |||||
| 8a | 20.78 ± 0.68 | NC | 34.58 ± 0.90 | 40.21 ± 1.02 | NT |
| 8b | 13.77 ± 1.02 | 33.28 ± 1.13 | NC | 24.57 ± 0.83 | NT |
| 8c | 4.75 ± 0.09 | 3.90 ± 1.12 | 8.90 ± 1.11 | 10.68 ± 0.40 | 1.79 ± 0.10 |
| 8d | 19.72 ± 0.08 | 16.90 ± 1.10 | 18.90 ± 0.09 | NC | NT |
| 8e | 2.08 ± 0.45 | 3.17 ± 0.55 | 4.58 ± 0.07 | 6.70 ± 0.39 | 2.55 ± 0.16 |
| 8f | 41.40 ± 1.13 | 32.17 ± 0.08 | NC | 25.68 ± 1.10 | NT |
| 8g | NC | 21.54 ± 1.13 | 17.48 ± 0.08 | 15.92 ± 0.09 | NT |
| 8h | 19.43 ± 1.13 | 20.78 ± 0.06 | 21.04 ± 1.32 | NC | NT |
| 8i | 2.15 ± 0.29 | 3.71 ± 0.03 | 2.58 ± 0.27 | 3.10 ± 1.54 | 2.70 ± 0.07 |
| 8j | 3.88 ± 1.15 | 2.85 ± 0.37 | NC | 4.68 ± 0.10 | 1.59 ± 0.03 |
| 8k | 29.03 ± 0.69 | 23.57 ± 1.10 | 32.56 ± 1.19 | 47.90 ± 1.15 | NT |
| 8l | 25.83 ± 0.75 | NC | 31.20 ± 1.03 | NC | NT |
| 8m | 2.17 ± 0.13 | 3.15 ± 0.84 | 2.67 ± 0.42 | 3.27 ± 0.34 | 0.87 ± 0.08 |
| 8n | 3.10 ± 0.32 | 2.89 ± 0.37 | 5.79 ± 0.28 | 7.80 ± 0.50 | 0.90 ± 0.60 |
| 8o | NC | 15.47 ± 0.42 | NC | 20.98 ± 1.01 | NT |
| DXN | 2.30 ± 0.15 | 3.50 ± 0.22 | 2.10 ± 0.10 | 3.59 ± 0.08 | NT |
| Erlotinib | NT | NT | NT | NT | 0.94 ± 0.09 |
Compounds 8g and 8h from this series demonstrated moderate inhibition against MDA-MB-231 and A549 cell lines and robustly regulated the progression of cancer (IC50 = 17.48 to 21.54 µM). With an IC50 value of 25.68 ± 1.10–41.40 ± 1.13 µM, molecule 8f from this series exhibited the lowest cancer potential against all cell lines. In contrast, compounds 8i and 8j demonstrated exceptional cytotoxicity potential against MDA-MB-231 (3.71 ± 0.03, 2.85 ± 0.37 µM), A549 (2.58 ± 0.27 µM), HepG2 (3.10 ± 1.54, 4.68 ± 0.10 µM), and MCF-7 (2.15 ± 0.29, 3.88 ± 1.15 µM) (Fig. 3). With IC50 values of 2.17 ± 1.03, 3.15 ± 1.16, 2.67 ± 0.52, and 3.27 ± 1.04 µM against breast, lung, and liver cancer cell lines, the p-hydroxyphenyl substituted molecule (8m) demonstrated strong anticancer activity. The halogenated derivative (8n) showed the strongest antitumor activity. The most promising inhibition was shown by 8n (4-Cl, & 2-OMe), with IC50 values of 2.89 ± 1.07 µM (MDAMB-231) and 3.10 ± 1.32 µM (MCF-7). Moreover, 8o(4-Cl) had a mild anticancer effect. According to these data, all the produced compounds had moderate activity against liver and lung cancer and superior activity against breast cancer.
Aberrant EGFR trafficking, often resulting from oncogenic mutations, disrupts regulatory processes, leading to hyperactivation of downstream signaling and contributing to cancer development. Despite extensive research, many questions remain regarding the mechanisms and interaction networks governing EGFR endocytosis and degradation. The EGFR is widely expressed in non-small cell lung cancer (NSCLC) and is an important target in NSCLC. However, the majority of NSCLC tumors express EGFR wild type (EGFRwt) and do not respond to EGFR inhibition. Nevertheless, EGFR ligands are commonly expressed in lung cancer. Furthermore, constitutive overexpression-induced EGFRwt signaling has also been reported. Thus, it is possible that EGFRwt could play an oncogenic role in lung cancer.26 Compounds 8c, 8e, 8i, 8j, 8m, and 8n showed potential cytotoxicity; additional testing was conducted to determine whether they had any inhibitory effects on EGFRWT. Since erlotinib is a potent EGFR inhibitor, it was employed as a reference drug.27 Table 2 provides a summary of the findings. The EGFRWT cytotoxicity of the most potent chemicals was also contrasted with that of erlotinib, a popular anticancer medication that demonstrated an IC50 value of more than 0.94 ± 0.09 µM. In comparison to erlotinib, all assessed drugs showed moderate to increased cytotoxicity. Compounds with comparatively stronger EGFRWT inhibitory effects among the tested compounds included 8c (IC50 = 1.79 ± 0.10 µM), 8j (IC50 = 1.59 ± 0.03 µM), 8m (IC50 = 0.87 ± 0.08 µM), and 8n (IC50 = 0.90 ± 0.60 µM). The investigated drugs exhibit moderate cytotoxicity against the EGFRWT enzyme; according to the results of the MTT experiment, their cytotoxic effects are noticeably greater than those of erlotinib. To balance the cytotoxicity and therapeutic efficacy of these compounds and maximize their therapeutic potential as anticancer medicines, more research is required.
Compounds 8e, 8i, and 8m showed no significant cytotoxicity on HCC827 cells across the tested concentration range (2–32 µM), with cell viability remaining above ∼70% even at the highest concentration (Table 3). This demonstrates their low toxicity and ability to sustain cellular metabolic activity within this range. Among the three, 8e exhibited the highest cell viability, indicating that it was the least cytotoxic compared to 8m and 8i (Fig. 4). These findings suggest that all three compounds possess a favorable safety profile and potential for further study.
| Concentration (µM) | % Cell viability | ||
|---|---|---|---|
| 8e | 8i | 8m | |
| Control | 100 | 100 | 100 |
| 2 | 98.50 ± 1.07 | 94.90 ± 1.17 | 95.52 ± 0.20 |
| 4 | 91.30 ± 1.34 | 89.10 ± 1.02 | 86.34 ± 1.02 |
| 8 | 87.72 ± 1.03 | 82.02 ± 1.03 | 80.12 ± 1.03 |
| 16 | 82.01 ± 1.01 | 79.05 ± 0.91 | 76.08 ± 0.91 |
| 32 | 76.60 ± 0.98 | 71.50 ± 1.18 | 69.50 ± 1.18 |
![]() | ||
| Fig. 4 Graph representing the % cell viability of different concentrations of 8e, 8i, and 8m on the HCC827 cell line. | ||
In solid tumours, members of the EGFR family are usually hyperactive. Several treatment strategies have been investigated that disrupt abnormal EGFR family signalling. Small compounds competing with ATP are a relatively novel therapeutic strategy for kinase inhibition. Numerous studies have demonstrated the effectiveness and selectivity of specific 4-anilino quinazoline derivatives as EGFR kinase inhibitors. There is structural information available for compounds of this general family that bind to the mitogen-activated protein kinase p38 (P38) and the distantly related intracellular kinase CDK2. Protein PDB-1M17 is used to analyze the interaction of the active compounds.29
PyRx software with Autodock Vina was used to conduct molecular docking investigations.30 ChemDraw was used to illustrate chemical compounds 8a–o. They were converted to pdbqt files, and the structures were minimized using a universal force field. Proteins with co-crystal ligands were used as binding sites in order to analyze the binding affinity. The coordinates were center_x = 10.11, center_y = 8.45, center_z = −11.15, size_x = 32.92, size_y = 36.64 and size_z = 33.44 for protein 3HB5 and center_x = 30.03, center_y = 5.85, center_z = 59.51, size_x = 37.98, size_y = 45.90 and size_z = 37.33 for protein 1M17. The interactions of the compounds with the proteins with good activity are tabulated in Tables 3 and 4. Compounds 8e, 8i, 8m and 8n showed good activity against breast cancer-related targeted proteins with docking scores of −10.5, 10.5, 10.7 and −10.8 kcal mol−1, respectively, and compounds 8e, 8j, 8m, and 8n showed good activity against EFRG with docking scores of −10.5, −8.1, −8.3, −8.4 and −8.2 kcal mol−1, respectively (Table 5) (Fig. 6).
| S. no. | Compound | Docking interactions (protein-1M17) | Docking score (kcal mol−1) |
|---|---|---|---|
| 1 | 8e | Hydrogen bond interactions: LYS-721, pi–pi-interactions-PHE-699, pi-anion-ASP-831, van der Waals interactions-GLN-767, MET-769, LEU-694, GLY-772, THR-830, pi-sigma interaction-LEU-820 | −8.1 |
| 2 | 8j | Pi-sigma interactions-LYS-721, pi-anion and cation-PHE-699, ASP-831, van der Waals interactions-GLU-738, ILE-765, LEU-764, MET-742, THR-766, ALA-719, THR-830 | −8.3 |
| Alkyl-pi alkyl-LEU-723, ILE-735, ALA-731, VAL-702, LEU-820 | |||
| 3 | 8m | Hydrogen bond-MET-769 | −8.4 |
| Alkyl-pi-alkyl ALA-719, LEU-694, VAL-702, LEU-820 van der Waals-ASP-776, GLU-780, LEU-764, THR-766, GLN-767, LEU-768, PRO-770, CYS-773, TYR-777, THR-830, MET-742 | |||
| 4 | 8n | van der Waals interactions-MET-742, THR-766, CYS-751, GLN-767, MET-769, GLY-772, LEU-768 | −8.2 |
| Pi–pi sigma interactions-PHE-699 | |||
| Alkyl-pi-alkyl interactions-ALA-719, LEU-694, VAL-702, LYS-721 | |||
| Carbon hydrogen interactions-ASP-831 | |||
| 5 | Co-crystal | ASN-152, MET-193, van der Waals interactions: TYR-218, SER-222, MET-279, HIS-221, GLU-282, VAL-283, CYS-185, THR-140, VAL-143, SER-142, GLY-186, PHE-192, ILE-14, hydrogen bond interactions: GLY-141, LYS-159, pi-sigma-LEU-149, alkyl interactions: VAL-225, PHE-226, PRO-187, TYR-155, VAL-188, PHE-259 | −6.9 |
| S. no. | Compound | Docking interactions (protein-3HB5) | Docking score (kcal mol−1) |
|---|---|---|---|
| 1 | 8e | Hydrogen bond interactions: TYR-155, GLY-144, VAL-143, SER-142, GLY-186, CYS-185 van der Waals interactions: THR-190, PHE-259, SER-222 | −10.5 |
| Pi-sigma-ILE-14, LEU-149 | |||
| Alkyl and pi-alkyl interactions: VAL-188, PHE-226, PRO-187, TYR-218, VAL-225 | |||
| Pi–pi stacked interaction: PHE-192 | |||
| 2 | 8i | Hydrogen bond interactions: ILE-14, TYR-155, CYS-185, VAL-143, SER-142, GLY-144, GLY-186 van der Waals interactions: THR-140, ASN-90, GLY-13, GLY-15, SER-122 | −10.2 |
| Pi-sigma-LEU-149 | |||
| Alkyl and pi-alkyl: VAL-225, HIS-221, TYR-218, VAL-188, PHE-226 | |||
| Pi–pi stacked: PHE-192 | |||
| 3 | 8m | Hydrogen bond interactions: TYR-155, GLY-144, VAL-143, SER-142, GLU-282, CYS-185 van der Waals interaction: ASN-152, LEU-96, VAL-196, LEU-262, MET-279, HIS-221, PHE-259, GLY-186 | −10.7 |
| Pi-sigma interaction: LEU-149 | |||
| Alkyl and pi-alkyl interactions: VAL-188, VAL-225, PRO-187, MET-193, PHE-192, PRO-187, VAL-225 | |||
| 4 | 8n | Hydrogen bond interactions: ILE-14, TYR-155, GLY-186, GLY-144, SER-142, CYS-185 van der Waals interactions: GLY-15, THR-140, THR-190, ASN-90, GLY-13, SER-222 | −10.8 |
| Pi–pi-stacked: PHE-192 | |||
| Alkyl and pi-alkyl interactions: HIS-228, TYR-218, MET-147, VAL-225, SER-142, CYS-185, GLY-144 | |||
| 5 | Co-crystal | Hydrogen bond interactions: GLY-141, LYS-152, van der Waals interactions: ASN-152, MET-193, TYR-218, SER-222, MET-279, HIS-221, GLU-282, VAL-283, CYS-185, THR-140, VAL-143, SER-142, GLY-186, PHE-192, pi-sigma interactions: LEU-149, alkyl interactions: VAL-225, PHE-226, PRO-187, TYR-155, VAL-188, PHE-259 | −11.4 |
Protein 1M17 forms important interactions with the synthesized active compound 8m. The hydrogen bond is formed with the oxygen of the 2-methoxyphenyl furan and the hydrogen of amino acid MET-769. Amino acids ALA-719 and LEU-820 formed alkyl and pi-alkyl interactions with the hydrogen of the 2-methoxyphenyl furan. The oxygen of the 4-hydroxy phenyl formed a hydrogen bond with amino acid LYS-721. It also formed alkyl and pi-alkyl interactions with VAL-702 and LEU-820. The cyclopropane formed an alkyl interaction with amino acid LEU-694. The 4-nitrophenyl form pi-sigma bonds with amino acid GLY-772 (Fig. 7).
Protein 3HB5 forms important interactions with the synthesized compound 8e. The hydrogen of the carbohydrazide forms a hydrogen bond with GLY-186, CYS-185 and SER-142. The oxygen of the carbohydrazide forms a hydrogen bond with the hydrogen of amino acid TYR-155. The oxygen of the furan-5-yl ring forms a hydrogen bond with amino acids VAL-143 and GLY-144. The pi-sigma bond is formed between ILE-14 and LEU-149 with the hydrogens of the phenyl and phenyl cyclopropane. The hydrogen of the dimethyl phenyl group forms alkyl bonds with amino acids TYR-218, VAL-225, and HIS-221. The pi–pi stacked interactions are formed between phenyl and PHE-192. The phenyl also formed pi alkyl interactions with the amino acids VAL-188 and PHE-226.
log cm s−1. Based on this criterion, we found that all the compounds 8a–o have suitable Caco-2 permeability ranging from −4.65 to −4.96 log cm s−1 when compared to the unsuitable value of −6.77
log cm s−1 for DXN (Table 6). The pink area in the radar figure represents the appropriate range of physicochemical space for optimal oral bioavailability (Fig. 9).
| S. no. | TPSA | log P |
nHet | HBA | HBD | nROTB | Lipinski | Veber | Egan | Mugge | Golden | Drug-likeness |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8a | 54.27 | 4.42 | 4.0 | 4.0 | 2.0 | 6.0 | Yes | Yes | Yes | Yes | Yes | −0.17 |
| 8b | 63.50 | 3.98 | 5.0 | 5.0 | 2.0 | 7.0 | Yes | Yes | Yes | Yes | Yes | −0.23 |
| 8c | 72.73 | 3.54 | 6.0 | 6.0 | 2.0 | 8.0 | Yes | Yes | Yes | Yes | Yes | 0.06 |
| 8d | 72.73 | 3.69 | 6.0 | 6.0 | 2.0 | 8.0 | Yes | Yes | Yes | Yes | Yes | 0.01 |
| 8e | 57.51 | 4.02 | 5.0 | 5.0 | 2.0 | 7.0 | Yes | Yes | Yes | Yes | Yes | −0.14 |
| 8f | 74.50 | 3.59 | 5.0 | 5.0 | 3.0 | 6.0 | Yes | Yes | Yes | Yes | Yes | 0.08 |
| 8g | 63.50 | 4.32 | 6.0 | 5.0 | 2.0 | 7.0 | Yes | Yes | Yes | Yes | Yes | 0.06 |
| 8h | 97.41 | 4.28 | 7.0 | 7.0 | 2.0 | 7.0 | Yes | Yes | Yes | Yes | Yes | −0.37 |
| 8i | 106.64 | 3.47 | 8.0 | 8.0 | 2.0 | 8.0 | Yes | Yes | Yes | Yes | Yes | −0.19 |
| 8j | 115.87 | 2.90 | 9.0 | 9.0 | 2.0 | 9.0 | Yes | Yes | Yes | Yes | Yes | −0.22 |
| 8k | 115.87 | 3.33 | 9.0 | 9.0 | 2.0 | 9.0 | Yes | Yes | Yes | Yes | Yes | −0.21 |
| 8l | 100.65 | 3.49 | 8.0 | 8.0 | 2.0 | 8.0 | Yes | Yes | Yes | Yes | Yes | −0.23 |
| 8m | 117.64 | 3.28 | 8.0 | 8.0 | 3.0 | 7.0 | Yes | Yes | Yes | Yes | Yes | −0.17 |
| 8n | 106.64 | 4.23 | 9.0 | 8.0 | 2.0 | 8.0 | Yes | Yes | Yes | Yes | Yes | −0.16 |
| 8o | 97.41 | 4.52 | 8.0 | 7.0 | 2.0 | 7.0 | Yes | Yes | Yes | Yes | Yes | −0.20 |
| DXN | 206.07 | 1.20 | 12.0 | 12.0 | 7.0 | 5.0 | Yes | Yes | Yes | Yes | Yes | 0.16 |
It was also calculated how the tested cyclopropane carbohydrazide may interact with cytochrome P450. The data obtained indicate that although none of the tested drugs are CYP2E1 inhibitors, all of them are CYP3A4 inhibitors, almost all of them are CYP2C19 inhibitors (with the exception of substances 8e, 8f, and 8l), and all of them are moderate CYP1A2 and CYP2C9 inhibitors (Table 7). Drug–drug interactions must be considered while developing new compounds. Although a modest inhibitor, CYP2D6 accounts for around 65% of drug metabolism. The intestinal or brain-assessed permeability technique (BOILED-Egg), a successful prediction model based on small-molecule lipophilicity and polarity calculations, was established in order to accomplish this goal. The BOILED-Egg model offers a rapid, simple, dependable, and statistically unmatched method for predicting the better brain permeability and GI absorption of small compounds for drug research and discovery (Fig. 10). The physicochemical zone of chemicals most likely to be absorbed by the GI tract seems to be the yolk or white portion of the egg. A region of chemical and physical defense against chemicals that can potentially enter the brain is the blood–brain barrier (BBB), which is shown in yellow. P-glycoprotein, a protein that pumps foreign chemicals out of cells, was unable to transport indomethacin or any of the most active drugs out of the cells. This suggests that the compounds can stay longer in the cells and have a greater effect on the receptors.
| S. no. | Cyp1 A2 | Cyp2 C19 | Cyp2 C9 | Cyp2 D6 | Cyp3 A4 | Cyp2 E1 | MDCK | Caco-2 | Aquatic tox | Skin sensi | hERG | AMES |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8a | 0.85 | 0.57 | 0.66 | 0.54 | 0.50 | 0.99 | −4.65 | −4.68 | 1 | 2 | 0.50 | 0.71 |
| 8b | 0.78 | 0.51 | 0.65 | 0.62 | 0.50 | 0.99 | −4.51 | −4.84 | 1 | 2 | 0.25 | 0.78 |
| 8c | 0.79 | 0.50 | 0.69 | 0.68 | 0.55 | 1.00 | −4.61 | −4.79 | 1 | 4 | 0.19 | 0.71 |
| 8d | 0.79 | 0.51 | 0.68 | 0.67 | 0.55 | 1.00 | −4.53 | −4.75 | 1 | 2 | 0.27 | 0.81 |
| 8e | 0.87 | 0.66 | 0.55 | 0.53 | 0.50 | 0.99 | −4.59 | −4.95 | 1 | 2 | 0.17 | 0.85 |
| 8f | 0.80 | 0.66 | 0.54 | 0.67 | 0.68 | 0.99 | −4.71 | −4.85 | 1 | 2 | 0.17 | 0.70 |
| 8g | 0.73 | 0.51 | 0.75 | 0.55 | 0.52 | 0.99 | −4.68 | −4.68 | 2 | 2 | 0.30 | 0.65 |
| 8h | 0.74 | 0.63 | 0.57 | 0.70 | 0.53 | 0.99 | −4.52 | −4.65 | 1 | 2 | 0.20 | 0.94 |
| 8i | 0.73 | 0.58 | 0.61 | 0.67 | 0.51 | 1.00 | −4.58 | −4.76 | 1 | 4 | 0.19 | 0.94 |
| 8j | 0.73 | 0.58 | 0.60 | 0.67 | 0.51 | 1.00 | −4.41 | −4.67 | 1 | 2 | 0.26 | 0.96 |
| 8k | 0.74 | 0.65 | 0.52 | 0.67 | 0.52 | 0.99 | −4.23 | −4.50 | 1 | 2 | 0.23 | 0.90 |
| 8l | 0.79 | 0.71 | 0.53 | 0.78 | 0.59 | 0.99 | −4.41 | −4.67 | 1 | 2 | 0.26 | 0.96 |
| 8m | 0.71 | 0.57 | 0.65 | 0.66 | 0.52 | 0.99 | −4.70 | −4.96 | 1 | 2 | 0.17 | 0.94 |
| 8n | 0.70 | 0.64 | 0.57 | 0.64 | 0.53 | 0.99 | −4.43 | −4.68 | 2 | 2 | 0.22 | 0.91 |
| 8o | 0.71 | 0.61 | 0.56 | 0.68 | 0.55 | 0.99 | −4.49 | −4.71 | 2 | 2 | 0.29 | 0.93 |
| DXN | 0.99 | 0.97 | 0.73 | 0.92 | 0.98 | 0.99 | −5.53 | −6.77 | 2 | 8 | 0.16 | 0.99 |
![]() | ||
| Fig. 10 Boiled egg representation of the intestinal absorption and permeation through the blood–brain barrier for diquinothiazines 8a–o and DXN. | ||
To use them as a model for permeability screening, Madin–Darby canine kidney (MDCK) cells were selected. Although DXN displayed a value of −5.53 cm s−1, Table 8 illustrates that the most active cyclopropane carbohydrazide had a high passive MDCK permeability of more than 20 × 10−6 cm s−1 in the range of −4.23 to −4.70 cm s−1. The findings of the computational analysis of all the synthesised cyclopropane carbohydrazides showed good pharmacokinetic properties for oral bioavailability. The predicted input compound's results provide details on the dataset's prepared fifteen structures, the distribution of the input compounds' physicochemical properties, and the acute toxicity class (predicted median lethal dose in weight, toxicity class, and prediction accuracy) (Table 7 and Fig. 11). A table with the predicted class and confidence score for each of the following is presented: hepatotoxicity, neurotoxicity, nephrotoxicity, cardiotoxicity (organ toxicity), carcinogenicity, mutagenicity, BBB-barrier, clinical toxicity (toxicity end points), oestrogen receptor alpha, mitochondrial membrane potential, GABA receptor, molecular initiating events, and metabolism. A toxicity radar graphic for active class prediction is another way to display prediction results. For an input chemical, the results of the active and inactive classes are also shown as a network plot (Fig. 12). Molecular docking predicted a high binding affinity of −10.8 kcal mol−1 with the target 8n, driven by hydrogen bondings with ILE-14, TYR-155, and CYS-185. The calculated parameters (log
P 4.23 and TPSA 106.64 Å2) fall within the recommended ranges for oral bioavailability, predicting high gastrointestinal absorption and low probability of toxicity (Table 8).
| S. no. | Hep. | Neur. | Neph. | Cardio. | Carcino. | Muta. | BBB | Clin. tox. | ER | MMP | GABA |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 8a | Active | Active | Inactive | Inactive | Active | Active | Active | Active | Inactive | Active | Inactive |
| 8b | Active | Active | Inactive | Inactive | Active | Active | Active | Active | Inactive | Inactive | Inactive |
| 8c | Active | Inactive | Inactive | Inactive | Active | Inactive | Active | Active | Inactive | Inactive | Inactive |
| 8d | Active | Inactive | Inactive | Inactive | Active | Inactive | Active | Active | Inactive | Active | Inactive |
| 8e | Active | Active | Inactive | Inactive | Active | Inactive | Active | Active | Inactive | Active | Inactive |
| 8f | Active | Inactive | Inactive | Inactive | Active | Active | Active | Active | Inactive | Inactive | Inactive |
| 8g | Active | Active | Inactive | Inactive | Active | Inactive | Active | Active | Inactive | Active | Inactive |
| 8h | Active | Inactive | Inactive | Inactive | Active | Active | Active | Inactive | Inactive | Active | Inactive |
| 8i | Active | Inactive | Inactive | Inactive | Active | Active | Active | Inactive | Inactive | Active | Inactive |
| 8j | Active | Inactive | Inactive | Inactive | Active | Active | Active | Inactive | Inactive | Active | Inactive |
| 8k | Active | Inactive | Inactive | Inactive | Active | Active | Active | Inactive | Inactive | Active | Inactive |
| 8l | Active | Inactive | Inactive | Inactive | Inactive | Active | Active | Inactive | Inactive | Active | Inactive |
| 8m | Active | Inactive | Inactive | Inactive | Inactive | Active | Active | Inactive | Inactive | Active | Inactive |
| 8n | Active | Inactive | Active | Inactive | Active | Active | Active | Inactive | Inactive | Active | Inactive |
| 8o | Active | Inactive | Active | Inactive | Active | Active | Active | Inactive | Inactive | Active | Inactive |
| DXN | In active | Active | Active | Active | Inactive | Active | Inactive | Active | Inactive | Inactive | Inactive |
![]() | ||
| Fig. 12 Toxicity radar charts for compound 8a and DXN (blue: probability for activity; orange: average for activity). | ||
A narrow gap suggests that a molecule can easily donate electrons (from HOMO) or accept them (into LUMO). This often correlates with higher biological activity (e.g., 8e, 8j, 8m and 8n in anticancer agents) because the drug can readily engage in charge-transfer interactions with proteins. A smaller HOMO–LUMO gap can indicate a better anticancer capacity. Generally, high biological activity often correlates with a certain range of dipole moments (often lower than 10–13 debye for many oral drugs), which aids in solubility and membrane permeability. From the results of DFT analysis, ligands 8e, 8m and 8n showed acceptable dipole moment values of 1.876039, 4.811753 and 4.388619 debye, respectively. From this analysis, a narrow HOMO–LUMO gap usually suggests higher reactivity, a specific dipole moment suggests better receptor binding, and structural stability indicates that the molecule will survive to reach the active site (Table 9).
| Molecule | Point group | E (Hartree) | Relative energy (kcal mol−1) | Dipole moment (D) | HOMO–LUMO gap (eV) | Imag. freq. |
|---|---|---|---|---|---|---|
| 8a | C1 | −1072.124136 | 462.26 | 2.1099 | 5.184 | 0 |
| 8b | C1 | −1147.322762 | 415.99 | 1.395499 | 4.973 | 0 |
| 8c | C1 | −1261.830961 | 345.39 | 1.810336 | 4.956 | 0 |
| 8d | C1 | −1261.836048 | 345.07 | 1.924019 | 4.889 | 0 |
| 8e | C1 | −1088.162927 | 453.84 | 1.876039 | 4.517 | 0 |
| 8f | C1 | −1108.022932 | 442.55 | 2.817164 | 5.059 | 0 |
| 8g | C1 | −1606.926201 | 128.17 | 3.777786 | 4.965 | 0 |
| 8h | C1 | −1276.604444 | 335.55 | 3.938784 | 2.706 | 0 |
| 8i | C1 | −1351.803027 | 288.39 | 3.374133 | 2.493 | 0 |
| 8j | C1 | −1466.311188 | 216.27 | 6.047712 | 2.472 | 0 |
| 8k | C1 | −1466.316805 | 215.91 | 5.017866 | 2.398 | 0 |
| 8l | C1 | −1292.643537 | 325.96 | 5.661041 | 2.012 | 0 |
| 8m | C1 | −1312.503226 | 313.42 | 4.811753 | 2.587 | 0 |
| 8n | C1 | −1811.406551 | 0 | 4.388619 | 2.781 | 0 |
| 8o | C1 | −1531.729782 | 175.33 | 5.516639 | 5.127 | 0 |
:
2) (62%). Mp: 98–100 °C.
:
ethyl acetate (8
:
2) as an eluent to afford pure compound 6 as a brownish solid (93%). Mp 170–172 °C.
:
8) and flash column chromatography, the crude chemical was refined to produce a pure white solid 8a (88%) (Mp 157–159 °C).
CH), 2923, 2835 (CH), 1682 (CO), 1548 (C
C), 1342 (NN), 1164 (COC). HRMS: m/z = 333.1029 [M + H]+.
C), 1340 (NN), 1152 (COC). HRMS: m/z = 349.0694 [M + H]+.
CH), 2922, 2850 (CH), 1725 (CO), 1597, 1515 (C
C), 1330 (NN), 1206, 1150 (COC). HRMS: m/z = 379.1701 [M + H]+.
C), 1326 (NN), 1154 (COC). HRMS: m/z = 379.0821 [M + H]+.
C), 1344 (NN), 1180 (COC). HRMS: m/z = 362.1281 [M + H]+.
C), 1351 (NN), 1152 (COC). HRMS: m/z = 335.0977 [M + H]+.
CH), 2920, 2852 (CH), 1713 (CO), 1562, 1509 (C
C), 1353 (NN), 1201 (COC). HRMS: m/z = 383.1540 [M + H]+, 384.1274 [M + 2H]+.
CH), 2927, 2858 (CH), 1721 (CO), 1610, 1556 (C
C), 1339 (NN), 1156 (COC). HRMS: m/z = 378.0494 [M + H]+.
CH), 2928 (CH), 1712 (CO), 1585 (C
C), 1330 (NN), 1208 (COC). HRMS: m/z = 394.1288 [M + H]+.
CH), 2929, 2855 (CH), 1729 (CO), 1574 (C
C), 1330 (NN), 1132 (COC). HRMS: m/z = 424.1436 [M + H]+.
CH), 2844 (CH), 1708 (CO), 1603 (C
C), 1344 (NN), 1173 (COC). HRMS: m/z = 424.1288 [M + H]+.
CH), 2813 (CH), 1726 (CO), 1600, 1514 (C
C), 1342 (NN), 1176 (COC). HRMS: m/z = 407.1385 [M + H]+.
CH), 2813 (CH), 1666 (CO), 1600, 1519 (C
C), 1350 (NN), 1176 (COC). HRMS: m/z = 380.1586 [M + H]+.
CH), 2854 (CH), 1685 (CO), 1585, 1517 (C
C), 1342 (NN), 1184, 1114 (COC), 854 (CCl). HRMS: m/z = 428.0627 [M + H]+, 429.0852 [M + 2H]+.
CH), 2843 (CH), 1684 (CO), 1580, 1510 (C
C), 1340 (NN), 1186 (COC), 856 (CCl). HRMS: m/z = 398.0703 [M + H]+, 399.1243 [M + 2H]+.The experimental procedure for biological evaluation, docking protocol, and spectroscopic copies of the 1H/13C NMR, HRMS, and IR spectra (Fig. S1–S60) are included in the SI documentation; the data supporting this study's findings are included in its SI.
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