Open Access Article
Shahab Kermaniniaa,
Morteza Farnia*a,
Mohammad Mahdavib and
Aida Iraji
*cd
aSchool of Chemistry, College of Science, University of Tehran, Tehran, Iran. E-mail: mfarnia@ut.ac.ir
bEndocrinology and Metabolism Research Center, Endocrinology and Metabolism Clinical Sciences Institute, Tehran University of Medical Sciences, Tehran, Iran
cStem Cells Technology Research Center, Shiraz University of Medical Sciences, Shiraz, Iran. E-mail: iraji@sums.ac.ir; Fax: +98 713 230 2225; Tel: +98 713 230 3872
dResearch Center for Traditional Medicine and History of Medicine, Department of Persian Medicine, School of Medicine, Shiraz University of Medical Sciences, Shiraz, Iran
First published on 20th April 2026
A series of novel coumarin-triazole hybrids (12a–s) were synthesized and evaluated for their inhibitory activities against cholinesterase including acetylcholinesterase (AChE) and butyrylcholinesterase (BChE), enzymes related to Alzheimer's disease. The structure–activity relationship (SAR) analysis revealed that substitutions at the 2-position of the aromatic ring significantly enhanced anti-BChE potency, with compound 12c (2-fluorophenyl) exhibiting moderate activity with IC50 = 4.37 ± 0.91 µM for BChE and 7.17 ± 0.42 µM for AChE. Docking studies demonstrated strong binding interactions of 12c with critical residues in the active site of the enzyme. Molecular dynamics simulations confirmed the stability of the 12c-AChE and 12c-BChE complexes over 100 ns, with low RMSD values and stable hydrogen bonding. These findings highlight the importance of electronic and steric effects in optimizing cholinesterase inhibition and provide insights into the design of effective agents for Alzheimer's disease therapy.
The global prevalence of AD is expected to rise dramatically with increasing life expectancy, placing an enormous burden on healthcare systems and societies. The primary symptoms of AD are memory loss, cognitive decline, and behavioral problems. AD progresses gradually, causing symptoms to worsen over time and ultimately making routine tasks more difficult.2,3
The disease is characterized by an accumulation of amyloid-beta plaques and neurofibrillary tangles in the brain, which lead to neuronal death. This neurodegeneration leads to brain atrophy, affecting memory and learning-related regions including the hippocampus and cerebral cortex.4,5 Also, according to cholinergic dysfunction, the decline in acetylcholine, a neurotransmitter crucial for cognitive function, is a major feature of AD pathogenesis, which exacerbates cognitive function.6
Two key enzymes involved in acetylcholine metabolism are acetylcholinesterase (AChE) and butyrylcholinesterase (BChE). AChE hydrolyzes acetylcholine at the synaptic cleft, stopping cholinergic signaling. In Alzheimer's, there is a reduction in the level of acetylcholine due to cholinergic neuron loss, which plays a major role in memory impairment and cognitive decline. Inhibition of AChE can help increase the acetylcholine level, hence, supporting cognitive function.7 Although acetylcholine is mainly broken by AChE, some studies indicate that BChE activity is increased in the brain of AD patients, particularly at the late stage of the disease. It was proposed that BChE contributes substantially to the remaining cholinergic activity and acetylcholine breakdown in advanced AD. As a result, pharmaceuticals that target both AChE and BChE have emerged to be effective strategies for enhancing cholinergic function and lowering cognitive deficits.8
Currently, there is no cure for AD, however, current medications try to reduce symptoms.9 Despite extensive efforts, available drugs such as donepezil, rivastigmine, and galantamine offer only modest symptomatic relief without altering disease progression. As life expectancy increases globally, there is an urgent need for further research to develop more effective therapies for the elderly. Scientists have put enormous efforts in developing effective drugs to target this disease through developing cholinergic inhibitors.10–12
Coumarin-based compounds have attracted considerable attention as potential small-molecule candidates for AD therapy due to their diverse biological activities. Coumarin scaffold as synthetic and natural compounds is widely present in different structures as may possess neuroprotective, anti-oxidative, and AChE inhibitory potency, it is reported that owing to the presence of polar elements in the structure might facilitate better interaction with the biological target.13,14 Bhagat et al., in 2021, used a rational drug design approach, and a new series of coumarin or isatin scaffolds was developed. The AChE inhibitory activity showed that coumarin-1,2,3-triazole hybrids (compound A, Fig. 1) were noted to be more powerful inhibitors than isatin-1,2,3-triazole hybrids. Structure–activity relationship (SAR) studies revealed that also presence of an electronegative group such as F, Cl, or NO2 on the substituted region improves AChE inhibition.15 Likewise, 1,2,3-triazole-chromenone compounds (compound B) shown encouraging anti-AD effects, with an IC50 of 21.71 µM against BChE and significant suppression of self-induced Aβ1–42 aggregation and AChE-induced Aβ aggregation (32.6% and 29.4%, respectively). According to SAR analysis, activity was increased by small-size halogen substituents.16 The 1,2,3-triazole ring is a versatile scaffold with advantageous properties such as stability in both basic and acidic environments, excellent bioavailability, and low multidrug resistance.17 Effective inhibition of AChE and BChE activities is made possible by its properties, which promote enzyme–inhibitor interactions. Docking studies have shown that triazole-based derivatives, including dimethylaminoacryloyl-chromenones (compound C), and aralkylamide (compound D) have strong anti-ChE activity, with van der Waals and hydrogen bonding interactions in the enzyme's active region being highlighted.18–20
Recent advancements include hybrid of triazoles such as 1,2,3-triazoles-naphthoquinone, where ortho-chlorine derivatives exhibited strong inhibitory activity. This derivative forms multiple interactions with the catalytic triad and the peripheral aromatic site (PAS) of the enzyme. Among the synthesized derivatives, compound E, featuring an ortho-chlorine moiety, exhibited the strongest inhibition of AChE and BChE, with Ki values of 10.16 nM and 8.04 nM, respectively.21 More recently, phenyl-diazenyl-phenoxy-1,2,3-triazole-acetamide (compound F) has emerged as a novel scaffold developed through the molecular hybridization of active pharmacophores. In vitro evaluations revealed that all newly synthesized compounds were more potent inhibitors of AChE and BChE than the standard drug galantamine. According to molecular docking experiments, the strongest compounds formed interactions with important elements of the AChE and BChE active sites, such as PAS and the catalytic active site (CAS).22
In this regard, the goal of the current work was to use molecular hybridization to develop new active molecules. A novel set of compounds with coumarin-triazole acetamide scaffold were designed, and synthesized, and their in vitro and in silico efficacy as possible anti-AD agents were assessed. A kinetic study was also conducted to learn more about the inhibitory mechanisms of the strongest analogs. In silico evaluations, such as molecular docking and molecular dynamics simulations, were carried out to predict and validate the binding interactions of these pharmaceuticals with their target enzymes to support the experimental results.
:
1 ethanol
:
NaOH (5 M) solution at 100 °C, acidified and extracted using ethyl acetate to furnish the corresponding carboxylic acid derivative in excellent yield (compound 6). Subsequently, the acid derivative (6) reacted with amine (7) in the presence of pyridine and in DMF to produce the carboxamide intermediate 8. This intermediate is then reacted with 2-chloro-N-phenylacetamide (11a–n) in DMF, sodium azide, copper sulfate, and sodium ascorbate, using click chemistry at 40 °C for 48 h. The final triazole hybrids are obtained by filtering the reaction mixture and washing the solid with cold water/ethyl acetate, yielding pure triazole derivatives 12a–n. The yields of the synthesized final products are presented in Table 1.
| Compounds | Yield% | Compounds | Yield% | Compounds | Yield% |
|---|---|---|---|---|---|
| 12a | 67 | 12h | 68 | 12n | 74 |
| 12b | 78 | 12i | 77 | 12o | 75 |
| 12c | 65 | 12j | 74 | 12p | 73 |
| 12d | 61 | 12k | 68 | 12q | 66 |
| 12e | 71 | 12l | 72 | 12r | 73 |
| 12f | 63 | 12m | 75 | 12s | 71 |
| 12g | 79 |
The structure of compound 12k was confirmed by 1H and 13C NMR spectroscopy (Fig. 3). Two signals at 10.62 and 10.59 ppm were assigned to the amide N–H protons (H24, H41). The peak at 9.10 ppm, corresponding to the other amide N–H proton (H13), appeared as a triplet due to coupling with the adjacent CH2 group. Two singlets at 8.33 and 8.88 ppm were attributed to the triazole C–H protons, confirming the successful formation of the 1,2,3-triazole rings. A singlet at 8.04 ppm was assigned to H10, which is located in the β-position relative to two carbonyl groups. The doublets at 7.94 and 7.31 ppm corresponded to H6 and H3, respectively, with H3 exhibiting a long-range coupling to H1. A doublet of doublets at 7.13 ppm was assigned to H1, which is coupled to both H3 and H6. Three singlet peaks at 5.31, 5.35, and 53.7 ppm were assigned to the three aliphatic CH2 groups. The doublet at 4.61 ppm corresponded to the CH2 adjacent to the amide N–H. In the 13C NMR spectrum, the most downfield signals were attributed to the two carbonyl moieties located at the termini of the molecular structure (C22, C39). The following four signals were assigned to four quaternary carbons directly attached to oxygen atoms. Two sets of high-intensity peaks appearing at δ 121 and 129 ppm corresponded to the aromatic carbon atoms C26, C27, C29, C30, C43, C44, C46, and C47. The most upfield signal in the aromatic region was assigned to carbon C3, due to the negative charge generated in resonance structures involving the adjacent oxygen atoms. The most upfield signal overall was assigned to carbon C15, which is directly bonded to the amide nitrogen. The most deshielded signal in the aliphatic region was assigned to carbon C32, which is directly bonded to an oxygen atom. Finally, two closely spaced signals observed at approximately 52 ppm were assigned to carbons C21 and C38.
| Compound | R | AChE | BChE | ||
|---|---|---|---|---|---|
| % Inhibition at 50 µM | IC50 (µM) | % Inhibition at 50 µM | IC50 (µM) | ||
| a Donepezil as positive control showed IC50 = 10.6 ± 2.1 µM against BChE and IC50 = 0.079 ± 0.05 µM against AChE. | |||||
| 12a | Phenyl | 84.43 ± 6.56 | 23.06 ± 3.74 | 46.02 ± 0.41 | >50 |
| 12b | 2-Methylphenyl | 52.59 ± 2.14 | 38.46 ± 0.63 | 56.19 ± 2.32 | 10.07 ± 1.63 |
| 12c | 2-Fluorophenyl | 62.03 ± 2.36 | 7.17 ± 0.42 | 66.66 ± 0.05 | 4.37 ± 0.91 |
| 12d | 2-Chlorophenyl | 33.92 ± 4.19 | >50 | 54.71 ± 3.15 | 39.90 ± 3.89 |
| 12e | 3-Methylphenyl | 24.58 ± 1.47 | >50 | 24.15 ± 2.63 | >50 |
| 12f | 3-Chlorophenyl | 37.35 ± 3.52 | >50 | 45.65 ± 0.55 | >50 |
| 12g | 4-Methylphenyl | 15.73 ± 3.39 | >50 | 37.98 ± 1.63 | >50 |
| 12h | 4-Ethylphenyl | 16.44 ± 1.94 | >50 | 39.29 ± 1.13 | >50 |
| 12i | 4-Methoxyphenyl | 32.23 ± 1.48 | >50 | 24.58 ± 3.36 | >50 |
| 12j | 4-Fluorophenyl | 37.11 ± 3.02 | >50 | 32.19 ± 2.93 | >50 |
| 12k | 4-Chlorophenyl | 44.03 ± 6.83 | >50 | 43.89 ± 7.41 | >50 |
| 12l | 4-Bromophenyl | 21.75 ± 5.11 | >50 | 39.38 ± 7.12 | >50 |
| 12m | 4-Trifluoromethylphenyl | 19.33 ± 1.89 | >50 | 38.78 ± 9.52 | >50 |
| 12n | 2,4-Dimethylphenyl | 59.65 ± 1.77 | 6.65 ± 1.31 | 54.33 ± 2.46 | 17.07 ± 4.61 |
| 12o | 2,4-Dimethoxyphenyl | 52.53 ± 0.64 | 18.66 ± 1.82 | 58.37 ± 5.42 | 17.28 ± 0.70 |
| 12p | 3,4,5-Trimethoxyphenyl | 22.87 ± 2.36 | >50 | 35.14 ± 2.46 | >50 |
| 12q | Benzyl | 56.24 ± 6.73 | 34.57 ± 15.74 | 47.50 ± 1.03 | >50 |
| 12r | 4-Methylbenzyl | 54.53 ± 2.24 | 46.68 ± 0.89 | 10.49 ± 0.55 | >50 |
| 12s | Phenylethyl | 24.70 ± 3.24 | >50 | 30.26 ± 2.41 | >50 |
The unsubstituted analog (compound 12a) exhibited moderate activity, with an IC50 of 23.06 ± 3.74 µM. Substituents at various positions on the aromatic ring had significant effects on the potency against AChE. Substituents at the 2-position showed mixed effects depending on their electronic properties. For example, compound 12c (2-fluorophenyl) demonstrated the most potent activity, with an IC50 of 7.17 ± 0.42 µM, highlighting the benefit of a small electron-withdrawing fluorine group. Conversely, bulkier groups such as chlorine (compound 12d) reduced activity, suggesting that steric hindrance may weaken enzyme interaction.
Substituents at the 3-position also resulted in weak activity. For instance, compounds 12e (3-methylphenyl) and 12f (3-chlorophenyl) exhibit significantly lower potency than the unsubstituted compound.
Most compounds exhibited moderate to weak activity for derivatives with substituents at the 4-position. Compound 12k (4-chlorophenyl) showed % inhibition of 44.03 ± 6.83, while compound 12g (4-methylphenyl), 12h (4-ethylphenyl), 12l (R: 4-bromophenyl) and 12m (R: 4-trifluoromethylphenyl) displayed even lower activity, with % inhibition values of 15.73 ± 3.39, 16.44 ± 1.94, 21.75 ± 5.11, and 19.33 ± 1.89, respectively. Also, 12i and 12j exhibited around 30% inhibition at 50 µM. These results suggest that the 4-position is less favorable for enhancing potency, regardless of substituent electronic or steric properties.
Disubstituted compounds demonstrated significant activity, influenced by the combination of substituents. Compound 12n (2,4-dimethylphenyl) exhibited the strongest activity, with an IC50 of 6.65 ± 1.31 µM, indicating that dual methyl substitution enhances binding affinity. Similarly, compound 12o (2,4-dimethoxyphenyl) showed an IC50 of 18.66 ± 1.82 µM, highlighting the favorable effects of electron-donating groups. These results indicate that 2,4-disubstitution is a favorable strategy for AChE inhibition.
The trisubstituted derivative compound 12p (3,4,5-trimethoxyphenyl) exhibited weak activity, with % inhibition of 22.87 ± 2.36, likely due to excessive steric hindrance and the reduced ability to interact effectively with the enzyme active site. Replacing the phenyl group with a benzyl group (compound 12q) showed moderate activity (IC50 = 34.57 ± 15.74 µM), but no significant improvement was observed compared with 12a. However, 12r bearing 4-methylbenzyl showed IC50 = 46.68 ± 0.89 µM, which showed improvement vs. 12g.
In summary, the most potent inhibitors were compound 12c (2-fluorophenyl) and compound 12n (2,4-dimethylphenyl), which demonstrated strong activity due to favorable steric and electronic effects. Substituents at the 2-position generally improved potency, while those at the 3- and 4-positions showed limited or no enhancement. These findings underscore the importance of substituent type and position for optimizing AChE inhibition in AD studies.
Substituents at the 2-position generally improved potency. For example, compound 12b (R = 2-methylphenyl), with an electron-donating group, exhibited an IC50 of 10.07 ± 1.63 µM, indicating significant improvement over the unsubstituted compound. The most potent compound was compound 12c (R = 2-fluorophenyl), with an IC50 of 4.37 ± 0.91 µM, highlighting the effectiveness of a small electron-withdrawing fluorine group at this position. However, replacing the small fluorine group with bulkier groups like chlorine (compound 12d) reduced the potency. This suggests that steric hindrance diminishes the benefits of larger substituents.
Changing the chlorine position from the 2- to the 3-position significantly reduced potency to 45.65% inhibition at 50 µM vs. compound 12d exhibited an IC50 of 39.90 ± 3.89 µM for 12f. Similarly, 3-methylphenyl substitution (compound 12e) decreases potency relative to 12b. This observation highlights the destructive role of meta substituent position for activity.
Substituents at the 4-position exhibited moderate to low activity across all derivatives (compounds 12g–m), with no significant differences among them. This suggests that substituents at this position have a limited impact on potency, regardless of their electronic or steric properties.
Disubstituted derivatives also exhibited improved potency, as shown by compounds 12n (2,4-dimethylphenyl) and 12o (2,4-dimethoxyphenyl), with IC50 values of 17.07 ± 4.61 µM and 17.28 ± 0.70 µM, respectively.
The trisubstituted derivative compound 12p (3,4,5-trimethoxyphenyl) exhibited weak activity, with % inhibition of 35.14%, suggesting that excessive steric bulk impair binding and inhibitory activity. Replacing the phenyl group with a benzyl one (compound 12q) showed no significant improvement in potency vs. 12a, indicating that extending the aromatic system does not enhance activity. The same trend were seen in 12r vs. 12g in which elongation of the linker is not favorable.
Overall, substituents at the 2-position generally improved inhibition, with small electron-withdrawing groups such as fluorine showing the greatest potency. Steric hindrance and electron-donating groups, especially in other positions, tend to reduce activity. These findings underscore the importance of optimizing substituent position for developing potent BChE inhibitors.
For BChE (Fig. 4a), the Lineweaver–Burk plot showed that both the slope and y-intercept increased with increasing inhibitor concentrations, indicating a competitive mode of inhibition. The inhibition constant (Ki) for compound 12c was determined from the secondary plot (Fig. 4b) and found to be 2.05 µM.
The detailed molecular docking (Table 3) and enzyme inhibition data (Table 2) provide clear evidence of the structural features required for effective AChE inhibition. Compounds 12a, 12c, and 12n emerged as the most potent inhibitors with IC50 values of 23.06 µM, 7.17 µM, and 6.65 µM, respectively, and docking scores of −14.40, −13.68, and −14.39 kcal mol−1. The active molecules show a consistent formation of π–π stacking interactions with Trp86 (located in the choline-binding site) and Trp286 (located in the PAS), as well as significant hydrogen bonding with Glu292, Phe295, and Arg296. The combined interactions seem to be important for achieving high binding affinity and potent inhibitory activity. Compound 12c showed a π-cation interaction with His447, a key residue within the catalytic triad of AChE. This interaction with the catalytic triad is may contribute to superior inhibitory potency compared to other analogs. Compounds 12a and 12n, while still potent, are stabilized mainly by the interactions with the choline-binding site and PAS, without directly targeting the catalytic triad. In contrast, less active or inactive derivatives (such as compounds 12d, 12e, 12f, 12g, 12h and 12i) mostly showed significantly higher docking energies (less favorable binding scores), which correlated with their lower enzyme inhibition percentages.
| Compound | AChE | BChE | ||
|---|---|---|---|---|
| Type of interaction with residue | Binding energy | Type of interaction with residue | Binding energy | |
| 12a | H-bond Phe295 | −14.40 | H-bond Ser287 | −9.085 |
| π–π stacking Tyr341 | H-bond Thr284 | |||
| H-bond Tyr124 | π-cation His438 | |||
| π–π stacking Tyr124 | π–π stacking Tyr332 | |||
| H-bond Tyr133 | ||||
| π–π stacking Trp86 | ||||
| π–π stacking Trp286 | ||||
| 12b | H-bond Glu292 | −11.143 | H-bond Gly197 | −10.804 |
| H-bond Phe295 | 2 × π–π stacking Trp82 | |||
| H-bond Arg296 | H-bond Pro285 | |||
| π–π stacking Phe337 | ||||
| π–π stacking Phe338 | ||||
| π–π stacking Tyr341 | ||||
| π–π stacking Trp286 | ||||
| 12c | H-bond Glu292 | −13.678 | H-bond Asp70 | −11.443 |
| H-bond Phe295 | H-bond Asn68 | |||
| H-bond Arg296 | H-bond Glu197 | |||
| H-bond Tyr124 | π–π stacking Tyr332 | |||
| π–π stacking Tyr341 | 2 × π–π stacking Trp82 | |||
| π–π stacking Phe338 | ||||
| π-cation interaction His447 | ||||
| 12d | Halogen bond Asp74 | −10.828 | Halogen bond Gly197 | −10.813 |
| π–π stacking Tyr341 | H-bond Gly197 | |||
| π–π stacking Phe338 | π–π stacking Phe329 | |||
| π–π stacking Trp285 | H-bond Pro285 | |||
| H-bond Glu292 | H-bond Tyr284 | |||
| 12e | H-bond Tyr124 | −9.342 | H-bond Thr284 | −10.051 |
| H-bond Leu289 | H-bond Asn289 | |||
| π–π stacking Trp86 | ||||
| π–π stacking Tyr341 | ||||
| 12f | Halogen bond Gln71 | −9.817 | Halogen bond Thr122 | −9.847 |
| Halogen bond Val73 | π-cation His438 | |||
| π–π stacking Trp286 | 2 × π–π stacking Tyr332 | |||
| H-bond Ser287 | ||||
| 12g | H-bond Tyr341 | −10.858 | H-bond Gly116 | −9.107 |
| 2 × π–π stacking Trp286 | H-bond Ser198 | |||
| π–π stacking Val340 | H-bond Ser287 | |||
| 12h | H-bond Tyr341 | −8.212 | H-bond Ser72 | −9.732 |
| 2 × π–π stacking Tyr341 | H-bond Gly116 | |||
| π–π stacking Phe338 | π–π stacking Tyr332 | |||
| 2 × π–π stacking Trp86 | π–π stacking Phe329 | |||
| 12i | H-bond Tyr124 | −9.727 | H-bond Asn68 | −8.218 |
| H-bond Asp74 | π–π stacking Tyr332 | |||
| π–π stacking Tyr124 | 2 × π–π stacking Phe329 | |||
| π–π stacking Tyr341 | ||||
| π–π stacking Tyr72 | ||||
| 12j | π–π stacking His287 | −9.865 | π–π stacking Trp82 | −9.703 |
| π–π stacking Tyr124 | π–π stacking Phe329 | |||
| π–π stacking Tyr341 | π–π stacking Tyr332 | |||
| H-bond Tyr124 | H-bond Asn68 | |||
| π–π stacking Tyr337 | H-bond Gln119 | |||
| 12k | π–π stacking Tyr341 | −9.410 | Halogen bond Asp70 | −10.213 |
| H-bond Trp341 | H-bond Tyr128 | |||
| H-bond Phe295 | π–π stacking Trp82 | |||
| π–π stacking Tyr337 | π–π stacking Tyr332 | |||
| 12l | Halogen bond Asp74 | −9.995 | Halogen bond Tyr128 | −9.044 |
| π–π stacking His447 | π–π stacking Trp82 | |||
| π–π stacking Tyr124 | π–π stacking Tyr332 | |||
| π–π stacking Trp286 | ||||
| π–π stacking Trp341 | ||||
| 12m | 2 × π–π stacking Tyr341 | −9.467 | H-bond Asp70 | −10.946 |
| H-bond Tyr124 | H-bond Ser72 | |||
| π–π stacking Trp82 | ||||
| 12n | H-bond Glu292 | −14.390 | H-bond Thr284 | −10.169 |
| H-bond Phe295 | H-bond Ser287 | |||
| H-bond Arg296 | π-cation His438 | |||
| π–π stacking Tyr337 | ||||
| π–π stacking Tyr341 | ||||
| π–π stacking Trp86 | ||||
| 12o | 2 × H-bond Tyr124 | −10.820 | H-bond Ser287 | −9.085 |
| π–π stacking Tyr124 | H-bond Thr284 | |||
| π–π stacking Tyr341 | π-cation His438 | |||
| π–π stacking Trp86 | π–π stacking Tyr332 | |||
| π–π stacking Trp286 | ||||
| 12p | 2 × π–π stacking Tyr341 | −7.138 | H-bond Gly197 | −10.804 |
| π–π stacking Phe338 | 2 × π–π stacking Trp82 | |||
| H-bond Pro285 | ||||
| 12q | π–π stacking Trp286 | −12.514 | H-bond Asp70 | −11.443 |
| 2 × H-bond Glu292 | H-bond Asn68 | |||
| π–π stacking Tyr341 | H-bond Glu197 | |||
| π–π stacking Tyr337 | π–π stacking Tyr332 | |||
| 2 × π–π stacking Trp82 | ||||
| 12r | π–π stacking Trp86 | −12.514 | H-bond Thr230 | −9.443 |
| H-bond Asp74 | H-bond Tyr128 | |||
| H-bond Gly202 | ||||
| H-bond Phe295 | ||||
| 12s | H-bond Gly202 | −9.245 | π–π stacking Tyr82 | −8.085 |
| π–π stacking Trp286 | H-bond Ser287 | |||
| π–π stacking Tyr341 | ||||
The comparative examination of BChE docking scores and molecular interactions reveals striking features accounting for significant increases in activity. The most potent derivatives seem to include 12c (IC50 = 4.37 µM, binding energy: −11.443 kcal mol−1), 12b (IC50 = 10.07 µM, −10.804 kcal mol−1), 12n (IC50 = 17.07 µM, −10.169 kcal mol−1), and 12o (IC50 = 17.28 µM, −10.685 kcal mol−1), as they showed much stronger docking scores than the less active analogs who had mostly binding energies between −9.0 and −10.2 kcal mol−1. Most importantly, these potent compounds appeared to form multiple hydrogen bonds with critical residues of Gly197, Glu197, Asn68, Pro285, and Thr284, and Ser287. Interestingly, the hydrogen bonding with Gly197 was common with active compounds 12b and 12d, but absent or much less frequent in the less active analogs. Moreover, 12c was unique in exhibiting hydrogen bonding with Glu197 and Asn68, interactions not observed in weaker derivatives, indicating that these polar contacts are responsible for 12c superior binding affinity. Also, Pro285 contributed to the stabilization of binding for the potent compounds but showed little to no involvement in interactions with the less active compounds. Whereas π–π stacking with Trp82 and Tyr332 was observed in both weak and potent variants, its contribution appears most significant when combined with other interactions, especially hydrogen bonding. Altogether, hydrogen bonding with Gly197, Glu197, Asn68, Pro285, and π–π stacking with Trp82 seems favorable.
The top-ranked pose of compound 12c as a BChE inhibitor within the binding site is illustrated in Fig. 5.
The top-ranked pose of compound 12c as an AChE inhibitor within the binding site is illustrated in Fig. 6.
Following this trend, the ligand exhibited minimal fluctuations within the enzyme's binding site, as indicated by RMSF values. All atoms showed RMSF values below 2 Å, except for number 48, which displayed a slightly higher RMSF of 2.3 Å. These data confirm the stability of the ligand within the active site of BChE (Fig. 8).
Based on the outcomes of molecular docking and MD simulation, it was determined that all 12c moieties participated in interactions with various binding pockets of the enzyme. Analyzing the interactions between the ligand and amino acid residues in the protein's active site is a crucial part of assessing the stability of the protein–ligand complex. The analysis of the full MD simulation run (0–100 ns) showed that the complex formed multiple stable interactions during the simulation, the amide linker attached to the 2-fluorophenyl formed hydrogen bond with Asp70 of the peripheral anionic site which facilitated interactions with the entrance of the enzyme's binding site, and the triazole moiety attached to this linker interacted with Ser287.
Also, the amide linker attached to the chromenone core formed several hydrogen-bond interactions with Pro285, mediated by a water molecule and residues in the oxanion hole region, such as Gly117, Gln119, and Thr120. The MD simulation demonstrates that water molecules mediate the stabilization of the complex, as underscored by these water-bridged interactions (Fig. 9).
![]() | ||
| Fig. 9 A schematic of detailed 12c atom interactions with the protein residues. Interactions that occur more than 20.0% of the simulation time in the selected trajectory. | ||
Additionally, the chromenone core established two hydrogen bonds, both mediated by water molecules: one with Gly116 (the oxanion hole area) and another with His438 (a member of the catalytic triad). Two hydrogen bonds involving the amide linker connected to the terminal 2-fluorophenyl group were established with Glu197 and Ser198 (catalytic triad). The current docking study repeatedly found this pattern of interaction. The methoxy triazole linker contributed to binding stability by participating in π–π stacking interactions with Trp430.
The compound's 3D interaction behavior within the BChE binding pocket was assessed at the start, middle, and end of the simulation to verify its stability and occupation over time. The results showed that the compound adopted an S-shaped conformation during the MD run, confirming that various moieties of the molecule successfully occupied distinct pockets of the enzyme during the simulation (Fig. 10). Based on the outcomes of molecular docking and MD simulation, it was determined that all 12c moieties participated in interactions with various binding pockets of the enzyme.
Molecular dynamics simulation of 12c in the AChE active site was also performed, and the RMSD of the 12c-AChE vs. AChE complexes are shown in Fig. 11. The apo enzyme and the ligand-bound complex displayed structural stability within the 100 ns simulation. The apo AChE had an average RMSD of approximately 1.5 Å, whereas the 12c-AChE complex showed a lower RMSD value of approximately 0.9 Å. This reduction of RMSD upon ligand binding suggests that compound 12c facilitates the stabilization of the structure of AChE during the simulation (Fig. 11).
Additionally, all atoms of the ligand exhibited RMSF values below 2 Å, indicating minimal atomic fluctuations during the simulation. These results confirm the structural stability of the ligand within the active site of AChE (Fig. 12).
12c binding interactions with AChE were also investigated. One of the 2-fluorophenyl groups exhibited both π-cation and π–π stacking interactions with His447, a crucial residue of the catalytic triad. The amide linker among the 2-fluorophenyl ring formed hydrogen bonds with Tyr72 (via a water molecule) and Glu202. The 1,2,4-triazole ring was involved in direct hydrogen bonding with Tyr124, π–π stacking with Trp86, and three water-assisted hydrogen bonds with Ser293, Glu291, and Trp286. The chromenone core was also involved in some stabilizing interactions like π–π stacking with Tyr124, Phe297, and Tyr341, and one hydrogen bond with Phe295 (Fig. 13).
![]() | ||
| Fig. 13 A schematic of detailed 12c atom interactions with the protein residues. Interactions that occur more than 20.0% of the simulation time in the selected trajectory. | ||
| Compound | MW (Da) | log P |
HBA | HBD | tPSA (Å2) | RB |
|---|---|---|---|---|---|---|
| 12a | 633.625 | 2.7624 | 12 | 3 | 265.701 | 12 |
| 12b | 661.680 | 3.3792 | 12 | 3 | 278.431 | 12 |
| 12c | 669.605 | 3.0406 | 12 | 3 | 274.032 | 12 |
| 12n | 689.733 | 3.9960 | 12 | 3 | 291.161 | 12 |
ADME predictions (Table 5) revealed moderate to high predicted intestinal absorption (67.60–72.32%), suggesting acceptable gastrointestinal uptake. All compounds were predicted to be P-glycoprotein (P-gp) substrates and CYP3A4 substrates, and to act as CYP3A4 inhibitors, indicating potential susceptibility to efflux transport and drug–drug interactions. None of the compounds were predicted to inhibit CYP2C19 or CYP1A2, and none were predicted to act as CYP2D6 substrates.
| Compound | VDss (human) | Intestinal absorption (%) | P-gp substrate | CYP3A4 inhibitor | CYP2C19 inhibitor | CYP1A2 inhibitor | CYP2D6 substrate | CYP3A4 substrate |
|---|---|---|---|---|---|---|---|---|
| 12a | −0.727 | 71.38 | Yes | Yes | No | No | No | Yes |
| 12b | −0.694 | 72.316 | Yes | Yes | No | No | No | Yes |
| 12c | −0.821 | 67.605 | Yes | Yes | No | No | No | Yes |
| 12n | −0.66 | 73.253 | Yes | Yes | No | No | No | Yes |
These findings provide valuable insights into the structure–activity relationships of triazole hybrids and establish a foundation for further optimization and development of potent cholinesterase inhibitors for therapeutic applications in Alzheimer's disease.
O) cm−1; 1H NMR (500 MHz, DMSO-d6) δ 10.48 (s, 1H), 10.44 (s, 1H), 9.10 (t, J = 4.8 Hz, 1H), 8.87 (s, 1H), 8.33 (s, 1H), 8.05 (s, 1H), 7.93 (d, J = 8.7 Hz, 1H), 7.62–7.50 (m, 4H), 7.37–7.26 (m, 5H), 7.13 (d, J = 8.4 Hz, 1H), 7.10–7.04 (m, 2H), 5.37–5.34 (m, 4H), 5.31 (s, 2H), 4.62 (d, J = 4.5 Hz, 2H): 13C NMR (126 MHz, DMSO-d6) δ 164.16, 164.08, 163.14, 161.39, 160.78, 156.07, 147.94, 138.37, 138.34, 131.62, 128.85, 126.68, 124.59, 123.76, 123.73, 119.23, 114.84, 114.08, 112.33, 101.15, 61.90, 52.23, 52.19, 34.80; anal. calcd; C32H27N9O6; C, 60.66; H, 4.30; N, 19.90; found; C, 60.82; H, 4.48; N, 20.08.
O) cm−1; 1H NMR (500 MHz, DMSO-d6) δ 9.80 (s, 1H), 9.76 (s, 1H), 9.10 (t, J = 5.5 Hz, 1H), 8.87 (s, 1H), 8.33 (s, 1H), 8.05 (s, 1H), 7.93 (d, J = 8.8 Hz, 1H), 7.41 (d, J = 7.8 Hz, 2H), 7.31 (d, J = 1.9 Hz, 1H), 7.22 (d, J = 7.2 Hz, 2H), 7.18–7.12 (m, 3H), 7.12–7.07 (m, 3H), 5.41 (s, 2H), 5.36 (s, 2H), 5.34 (s, 2H), 4.61 (d, J = 5.2 Hz, 2H), 2.23–2.21 (m, 6H): 13C NMR (126 MHz, DMSO-d6) δ 164.86, 164.78, 163.64, 161.88, 161.28, 156.58, 148.45, 144.61, 141.98, 135.99, 135.96, 132.12, 132.06, 130.90, 127.17, 126.52, 126.04, 126.01, 125.20, 125.03, 115.34, 114.59, 112.83, 101.64, 62.39, 52.45, 52.41, 35.30, 18.23; anal. calcd; C34H31N9O6; C, 61.72; H, 4.72; N, 19.05; found; C, 61.91; H, 4.87; N, 19.28.
O) cm−1; 1H NMR (500 MHz, DMSO-d6) δ 10.33 (s, 1H), 10.29 (s, 1H), 9.10 (t, J = 5.2 Hz, 1H), 8.88 (s, 1H), 8.80 (s, 1H), 8.67 (d, J = 14.2 Hz, 1H), 8.32 (s, 1H), 8.04 (s, 1H), 7.94 (d, J = 8.7 Hz, 1H), 7.92–7.86 (m, 2H), 7.33–7.24 (m, 2H), 7.22–7.08 (m, 4H), 5.45 (s, 2H), 5.40 (s, 2H), 5.35 (s, 2H), 4.61 (d, J = 5.1 Hz, 2H): 13C NMR (126 MHz, DMSO-d6) δ 164.84, 164.80, 163.18, 161.61., 160.90, 157.57, 156.18, 153.54 (d, J = 246.0 Hz), 148.09, 141.73, 135.94, 131.74, 130.76, 126.85, 125.77, 125.55, 124.54, 123.81, 120.37, 115.75, 115.60, 114.20, 11.85, 101.59, 101.21, 61.97, 52.07, 52.04, 34.90; anal. calcd; C32H25F2N9O6; C, 57.40; H, 3.76; N, 18.83; found; C, 57.56; H, 3.91; N, 19.02. The purity of the compound was checked using HPLC (98.2% purity).
O) cm−1; 1H NMR (500 MHz, DMSO-d6) δ 10.09 (s, 1H), 10.04 (s, 1H), 9.10 (t, J = 4.8 Hz, 1H), 8.87 (s, 1H), 8.33 (s, 1H), 8.05 (s, 1H), 7.93 (d, J = 8.7 Hz, 1H), 7.72 (d, J = 8.1 Hz, 2H), 7.51 (d, J = 9.0 Hz, 2H), 7.37–7.29 (m, 3H), 7.27–7.17 (m, 2H), 7.12 (d, J = 10.8 Hz, 1H), 5.47 (s, 2H), 5.41 (s, 2H), 5.35 (s, 2H), 4.61 (d, J = 4.6 Hz, 2H): 13C NMR (126 MHz, DMSO-d6) δ 165.01, 164.93, 163.23, 161.50, 160.90, 148.09, 134.23, 134.21, 131.74, 129.69, 127.63, 126.85, 126.38, 126.11, 125.78, 124.78, 114.91, 114.21, 112.43, 101.23, 61.96, 52.07, 52.01, 34.92; anal. calcd; C32H25C12N9O6; C, 54.71; H, 3.59; N, 17.94; found; C, 54.93; H, 3.76; N, 18.14.
O) cm−1; 1H NMR (500 MHz, DMSO-d6) δ 10.67–10.27 (m, 2H), 9.11 (s, 1H), 8.88 (s, 1H), 8.33 (s, 1H), 8.04 (s, 1H), 7.93 (t, J = 5.8 Hz, 1H), 7.40 (s, 1H), 7.38–7.33 (m, 2H), 7.31 (s, 1H), 7.27–7.16 (m, 3H), 7.13 (d, J = 9.0 Hz, 1H), 6.99–6.75 (m, 2H), 5.35 (m, 4H), 5.30 (s, 2H), 4.61 (d, J = 5.7 Hz, 2H), 2.41–2.11 (m, 6H); 13C NMR (126 MHz, DMSO-d6) δ 164.15, 164.11, 164.06, 163.15, 161.42, 160.84, 156.11, 148.03, 141.45, 138.33, 138.13, 131.67, 128.74, 126.79, 124.49, 124.46, 119.75, 116.39, 114.81, 114.12, 112.35, 101.12, 61.88, 52.26, 52.20, 34.82, 21.15; anal. calcd; C34H31N9O6; C, 61.72; H, 4.72; N, 19.05; found; C, 61.90; H, 4.91; N, 19.25.
O) cm−1, 1H NMR (500 MHz, DMSO-d6) δ 10.09 (s, 1H), 10.04 (s, 1H), 9.10 (t, J = 5.1 Hz, 1H), 8.87 (s, 1H), 8.33 (s, 1H), 8.05 (s, 1H), 7.93 (d, J = 8.7 Hz, 1H), 7.85 (d, J = 8.5 Hz, 1H), 7.73 (d, J = 7.7 Hz, 2H), 7.55–7.47 (m, 2H), 7.38–7.29 (m, 2H), 7.27–7.17 (m, 2H), 7.13 (d, J = 8.8 Hz, 1H), 5.47 (s, 2H), 5.42 (s, 2H), 5.35 (s, 2H), 4.61 (d, J = 4.7 Hz, 2H): 13C NMR (126 MHz, DMSO-d6) δ 165.00, 164.93, 163.23, 161.51, 160.90, 156.19, 148.09, 142.07, 141.64, 136.03, 134.24, 134.22, 131.75, 130.74, 129.71, 129.69, 127.64, 126.83, 126.80, 126.41, 126.30, 125.97, 125.93, 124.81, 124.72, 114.91, 114.21, 112.44, 111.81, 101.24, 61.96, 59.83, 52.06, 52.02, 34.92, 20.83, 14.16; anal. calcd; C32H25C12N9O6; C, 54.71; H, 3.59; N, 17.94; found; C, 54.92; H, 3.77; N, 18.15.
O) cm−1, 1H NMR (500 MHz, DMSO-d6) δ 10.35 (s, 1H), 10.32 (s, 1H), 9.08 (t, J = 4.9 Hz, 1H), 8.87 (s, 1H), 8.31 (s, 1H), 8.03 (s, 1H), 7.93 (d, J = 8.7 Hz, 1H), 7.48–7.42 (m, 4H), 7.30 (s, 1H), 7.16–7.05 (m, 5H), 5.35 (s, 2H), 5.33 (s, 2H), 5.27 (s, 2H), 4.61 (d, J = 5.1 Hz, 2H), 2.24 (s, 6H): 13C NMR (126 MHz, DMSO-d6) δ 164.39, 164.30, 163.58, 161.87, 161.27, 156.58, 148.51, 146.10, 141.96, 136.36, 136.34, 133.25, 132.13, 132.11, 129.72, 129.71, 129.70, 127.21, 127.18, 125.07, 119.76, 115.29, 114.54, 112.83, 101.64, 62.30, 52.71, 52.70, 35.32, 20.87; anal. calcd; C34H31N9O6; C, 61.72; H, 4.72; N, 19.05; found; C, 62.12; H, 5.15; N, 19.41. HRMS (TOF MS E+) m/z calcd for C34H31N9O6Na [M + Na]+ 684.6697; found 684.3505.
O) cm−1, 1H NMR (500 MHz, DMSO-d6) δ 10.40 (s, 1H), 10.37 (s, 1H), 9.10 (t, J = 5.0 Hz, 1H), 8.88 (s, 1H), 8.32 (s, 1H), 8.04 (s, 1H), 7.93 (d, J = 8.8 Hz, 1H), 7.47 (d, J = 8.1 Hz, 4H), 7.31 (s, 1H), 7.20–7.09 (m, 5H), 5.36–5.33 (m, 4H), 5.28 (s, 2H), 4.61 (d, J = 5.2 Hz, 2H), 2.54 (q, J = 7.2 Hz, 4H), 1.14 (t, J = 7.4 Hz, 6H); 13C NMR (126 MHz, DMSO-d6) δ 164.05, 163.97, 163.26, 161.52, 160.93, 156.20, 148.10, 141.56, 139.29, 136.18, 131.75, 128.17, 126.86, 119.41, 114.91, 114.22, 112.45, 101.24, 61.99, 52.32, 52.27, 34.93, 27.66, 15.67; anal. calcd; C36H35N9O6; C, 62.69; H, 5.12; N, 18.28; found; C, 62.85; H, 5.30; N, 18.44.
O) cm−1; 1H NMR (400 MHz, DMSO-d6) δ 10.57–10.20 (m, 2H), 9.13 (t, J = 5.8 Hz, 1H), 8.90 (s, 1H), 8.35 (s, 1H), 8.06 (s, 1H), 7.96 (d, J = 8.6 Hz, 1H), 7.50 (d, J = 8.6 Hz, 4H), 7.34 (d, J = 2.4 Hz, 1H), 7.15 (dd, J = 8.7, 2.4 Hz, 1H), 6.97–6.85 (m, 4H), 5.40–5.33 (m, 4H), 5.29 (s, 2H), 4.63 (d, J = 5.6 Hz, 2H), 3.72 (s, 6H); 13C NMR (101 MHz, DMSO-d6) δ 164.16, 164.08, 163.62, 163.59, 162.11, 161.89, 161.31, 156.59, 155.96, 148.51, 132.16, 131.98, 131.95, 127.28, 121.21, 121.20, 114.61, 114.47, 114.42, 55.61, 52.59, 52.58, 42.99; anal. calcd; C34H31N9O8; C, 58.87; H, 4.50; N, 18.17; found; C, 59.03; H, 4.68; N, 18.37.
O) cm−1; 1H NMR (500 MHz, DMSO-d6) δ 10.56 (s, 1H), 10.52 (s, 1H), 9.10 (t, J = 4.7 Hz, 1H), 8.87 (s, 1H), 8.33 (s, 1H), 8.05 (s, 1H), 7.93 (d, J = 8.7 Hz, 1H), 7.68–7.51 (m, 4H), 7.31 (s, 1H), 7.24–7.12 (m, 5H), 5.38–5.33 (m, 4H), 5.30 (s, 2H), 4.61 (d, J = 4.7 Hz, 2H): 13C NMR (126 MHz, DMSO-d6) δ 164.25, 164.17, 163.23, 161.51, 160.91, 158.34 (d, J = 238.5 Hz), 156.17, 148.08, 141.62, 134.85, 134.84, 134.82, 131.72, 126.84, 124.74, 121.14 (d, J = 7.8 Hz), 115.56 (d, J = 22.3 Hz), 114.88, 114.19, 112.43, 101.22, 61.98, 52.27, 52.23, 34.92; 19F NMR (471 MHz, DMSO-d6) δ −118.65 (dtt, J = 21.3, 8.7, 4.8 Hz); anal. calcd; C32H25F2N9O6; C, 57.40; H, 3.76; N, 18.83; found; C, 57.62; H, 3.91; N, 18.98.
O) cm−1; 1H NMR (500 MHz, DMSO-d6) δ 10.62 (s, 1H, NH), 10.59 (s, 1H, NH), 9.10 (t, J = 5.5 Hz, 1H, H13), 8.88 (s, 1H, triazole), 8.33 (s, 1H, triazole), 8.04 (s, 1H, H6), 7.94 (d, J = 8.8 Hz, 1H, H6), 7.59 (d, J = 8.1 Hz, 4H), 7.40–7.36 (m, 4H), 7.31 (d, J = 2.0 Hz, 1H, H3), 7.13 (dd, J = 8.7, 2.2 Hz, 1H, H1), 5.37 (s, 2H, CH2), 5.35 (s, 2H, CH2), 5.31 (s, 2H, CH2), 4.61 (d, J = 5.3 Hz, 2H, H15): 13C NMR (126 MHz, DMSO-d6) δ 164.90 (C39 or C22), 164.82 (C39 or C22), 163.65, 161.90, 161.30, 156.44, 148.48, 137.84, 137.81, 132.14, 129.31, 129.30, 127.90, 127.87, 127.20, 125.11, 121.32, 115.35, 114.61, 112.85, 101.66 (C3), 62.39 (C32), 52.72 (CH2), 52.66 (CH2), 35.45 (C15); anal. calcd; C23H21N3O4; C, 54.71; H, 3.59; N, 17.94; found; C, 54.93; H, 3.71; N, 18.09.
O) cm−1; 1H NMR (500 MHz, DMSO-d6) δ 10.62 (s, 1H), 10.59 (s, 1H), 9.09 (t, J = 5.6 Hz, 1H), 8.88 (s, 1H), 8.32 (s, 1H), 8.04 (s, 1H), 7.94 (d, J = 8.8 Hz, 1H), 7.55–7.54 (m, 1H), 7.54–7.53 (m, 3H), 7.52–7.50 (m, 3H), 7.50–7.49 (m, 1H), 7.31 (d, J = 2.2 Hz, 1H), 7.13 (dd, J = 8.7, 2.3 Hz, 1H), 5.36 (s, 2H), 5.35 (s, 2H), 5.31 (s, 2H), 4.61 (d, J = 5.4 Hz, 2H): 13C NMR (126 MHz, DMSO-d6) δ 164.90, 164.82, 163.63, 161.88, 161.28, 156.58, 148.46, 142.01, 138.24, 138.21, 132.22, 132.20, 127.19, 121.66, 115.90, 115.87, 115.34, 114.59, 112.83, 101.65, 62.38, 52.72, 52.67, 35.29; anal. calcd; C32H25Br2N9O6; C, 48.57; H, 3.18; N, 15.93; found; C, 48.82; H, 3.36; N, 16.12.
O) cm−1; 1H NMR (500 MHz, DMSO-d6) δ 11.13–10.51 (m, 2H), 9.11 (t, J = 5.7 Hz, 1H), 8.88 (s, 1H), 8.35 (s, 1H), 8.07 (s, 1H), 7.93 (d, J = 8.7 Hz, 1H), 7.78 (d, J = 8.3 Hz, 4H), 7.74–7.65 (m, 4H), 7.31 (d, J = 2.4 Hz, 1H), 7.12 (dd, J = 8.8, 2.4 Hz, 1H), 5.43 (s, 2H), 5.40–5.30 (m, 4H), 4.62 (d, J = 5.6 Hz, 2H); 13C NMR (126 MHz, DMSO-d6) δ 165.41, 165.33, 163.55, 161.82, 161.24, 156.51, 148.43, 142.36 (d, J = 3.2 Hz), 141.96, 132.07, 127.91, 127.22 (d, J = 3.3 Hz), 126.82–126.52 (m), 125.75, 125.11, 124.31 (d, J = 4.3 Hz), 124.05 (d, J = 4.4 Hz), 123.60, 119.57, 115.21, 114.53, 112.76, 101.53, 62.28, 52.69, 52.63, 35.23; anal. calcd; C34H25F6N9O6; C, 53.06; H, 3.27; N, 16.38; found; C, 53.21; H, 3.42; N, 16.55.
O) cm−1, 1H NMR (500 MHz, DMSO-d6) δ 9.74 (s, 1H), 9.69 (s, 1H), 9.10 (t, J = 4.9 Hz, 1H), 8.87 (s, 1H), 8.32 (s, 1H), 8.04 (s, 1H), 7.92 (d, J = 8.6 Hz, 1H), 7.30 (s, 1H), 7.26 (d, J = 7.9 Hz, 2H), 7.12 (d, J = 8.3 Hz, 1H), 7.04–7.00 (m, 2H), 6.99–6.93 (m, 2H), 5.38 (s, 2H), 5.36–5.31 (m, 4H), 4.61 (d, J = 5.1 Hz, 2H), 2.23 (s, 6H), 2.17 (s, 6H): 13C NMR (126 MHz, DMSO-d6) δ 164.42, 164.34, 163.30, 163.24, 161.49, 161.41, 160.90, 160.78, 156.22, 156.18, 148.25, 148.09, 142.04, 141.58, 134.80, 134.75, 132.99, 132.96, 131.78, 131.74, 131.63, 131.02, 114.89, 114.21, 112.41, 101.21, 80.91, 73.31, 61.97, 52.03, 51.98, 34.92, 28.75, 20.53, 17.78; anal. calcd; C36H35N9O6; C, 62.69; H, 5.12; N, 18.28; found; C, 62.90; H, 5.30; N, 18.42.
O) cm−1; 1H NMR (500 MHz, DMSO-d6) δ 9.62 (s, 1H), 9.57 (s, 1H), 9.09 (t, J = 5.6 Hz, 1H), 8.87 (s, 1H), 8.30 (s, 1H), 8.01 (s, 1H), 7.93 (d, J = 8.8 Hz, 1H), 7.69 (dd, J = 8.8, 2.1 Hz, 2H), 7.31 (d, J = 2.2 Hz, 1H), 7.12 (dd, J = 8.7, 2.3 Hz, 1H), 6.69–6.59 (m, 2H), 6.52–6.42 (m, 2H), 5.39 (s, 2H), 5.34 (s, 4H), 4.60 (d, J = 5.5 Hz, 2H), 3.83–3.82 (m, 6H), 3.74–3.71 (m, 6H): 13C NMR (126 MHz, DMSO-d6) δ 164.58, 164.51, 163.65, 161.90, 161.26, 157.56, 157.54, 156.59, 151.82, 148.46, 141.98, 132.13, 127.16, 125.02, 123.85, 123.80, 120.12, 115.35, 114.60, 112.84, 104.67, 101.65, 99.42, 56.26, 55.79, 52.60, 52.55, 35.30; anal. calcd; C36H35N9O10; C, 57.37; H, 4.68; N, 16.73; found; C, 57.53; H, 4.91; N, 16.91.
O) cm−1; 1H NMR (500 MHz, DMSO-d6) δ 10.44 (s, 1H), 10.41 (s, 1H), 9.10 (t, J = 5.0 Hz, 1H), 8.87 (s, 1H), 8.32 (s, 1H), 8.03 (s, 1H), 7.94 (d, J = 8.8 Hz, 1H), 7.32 (s, 1H), 7.13 (d, J = 10.2 Hz, 1H), 6.94 (s, 4H), 5.35 (s, 2H), 5.33 (s, 2H), 5.28 (s, 2H), 4.61 (d, J = 5.0 Hz, 2H), 3.74–3.70 (m, 12H), 3.61–3.58 (m, 6H): 13C NMR (126 MHz, DMSO-d6) δ 164.15, 164.06, 163.24, 161.51, 160.92, 156.17, 152.88, 148.08, 141.64, 134.57, 134.55, 133.85, 133.82, 131.73, 126.88, 124.78, 114.86, 114.19, 112.43, 101.20, 97.06, 61.97, 60.17, 55.76, 52.34, 52.30, 34.91; anal. calcd; C38H39N9O12; C, 56.09; H, 4.83; N, 15.49; found; C, 56.26; H, 5.04; N, 15.70.
O) cm−1, 1H NMR (500 MHz, DMSO-d6) δ 9.08 (t, J = 5.5 Hz, 1H), 8.87 (s, 1H), 8.84 (d, J = 5.4 Hz, 1H), 8.81 (t, J = 5.3 Hz, 1H), 8.27 (s, 1H), 7.99 (s, 1H), 7.93 (d, J = 8.8 Hz, 1H), 7.35–7.30 (m, 5H), 7.29–7.23 (m, 6H), 7.12 (dd, J = 8.7, 2.3 Hz, 1H), 5.33 (s, 1H), 5.19 (s, 2H), 5.14 (s, 2H), 4.59 (d, J = 5.5 Hz, 2H), 4.31 (t, J = 5.4 Hz, 4H): 13C NMR (126 MHz, DMSO-d6) δ 165.56, 165.48, 163.25, 161.49, 160.91, 156.18, 148.10, 141.53, 138.79, 131.74, 128.44, 127.47, 127.15, 127.01, 126.82, 126.62, 124.63, 114.89, 114.21, 112.43, 101.21, 61.97, 51.71, 45.15, 41.63, 34.90: anal. calcd; C34H31N9O6; C, 61.72; H, 4.72; N, 19.05; found; C, 61.94; H, 4.86; N, 19.20.
O) cm−1; 1H NMR (500 MHz, DMSO-d6) δ 9.08 (t, J = 5.8 Hz, 1H), 8.87 (s, 1H), 8.84–8.70 (m, 2H), 8.27 (s, 1H), 7.98 (s, 1H), 7.93 (d, J = 8.7 Hz, 1H), 7.30 (s, 1H), 7.24–7.02 (m, 9H), 5.33 (s, 2H), 5.18 (s, 2H), 5.12 (s, 2H), 4.60 (d, J = 5.6 Hz, 2H), 4.34–4.20 (m, 4H), 2.38–2.14 (m, 6H); 13C NMR (126 MHz, DMSO-d6) δ 165.37, 165.28, 163.14, 161.39, 160.81, 156.08, 148.00, 141.40, 136.10, 136.07, 135.64, 135.61, 131.63, 128.87, 127.38, 126.65, 124.54, 114.75, 114.09, 112.32, 101.09, 63.09, 61.87, 51.64, 42.15, 42.12, 34.82, 20.64; anal. calcd; C36H35N9O6; C, 62.69; H, 5.12; N, 18.28; found; C, 62.86; H, 5.30; N, 18.40.
O) cm−1; 1H NMR (400 MHz, DMSO-d6) δ 9.11 (t, J = 5.7 Hz, 2H), 8.90 (s, 1H), 8.53–8.38 (m, 4H), 8.24 (s, 1H), 8.07–7.89 (m, 2H), 7.34–7.32 (m, 1H), 7.31–7.29 (m, 1H), 7.29–7.27 (m, 1H), 7.24–7.20 (m, 6H), 5.34 (s, 2H), 5.11 (s, 2H), 5.06 (s, 2H), 4.61 (d, J = 5.6 Hz, 2H), 3.35–3.21 (m, 4H), 2.80–2.65 (m, 4H); 13C NMR (101 MHz, DMSO-d6) δ 165.80, 165.71, 163.63, 161.88, 157.38, 156.58, 148.67, 148.52, 141.84, 141.18, 139.64, 139.62, 132.52, 129.12, 128.85, 128.85, 127.09, 126.66, 124.91, 114.62, 112.90, 72.96, 63.53, 52.08, 40.89, 35.37; anal. calcd; C36H35N9O6; C, 62.69; H, 5.12; N, 18.28; found; C, 62.85; H, 5.32; N, 18.42.The dynamic behavior and structural changes of the systems were analyzed by the calculation of the root mean square deviation (RMSD) and RMSF. Subsequently, the energy-minimized structure calculated from the equilibrated trajectory system was evaluated to investigate each ligand–protein complex interaction.31
Supplementary information (SI) is available. See DOI: https://doi.org/10.1039/d5ra09311b.
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