Fatima
Younas
a,
Jahan Zaib
Arshad
*a,
Waqas Ali
Shah
*b,
Sundas
Arshad
c,
Adnan
Ashraf
d,
Syed Shoaib Ahmad
Shah
*e,
Muhammad Asam
Raza
f,
Amara
Mumtaz
g,
Nasir
Shahzad
h and
Tariq
Javed
i
aDepartment of Chemistry, Government College Women University Sialkot, Sialkot, 51310, Pakistan. E-mail: jahanzaib.arshad@gcwus.edu.pk
bSchool of Chemistry and Chemical Engineering, Henan Normal University, Xinxiang, 453007, China. E-mail: waqasalishah1@hotmail.com
cInternational Research Institute for Steel Technology, Collaborative Innovation Center for Advanced Steels, Wuhan University of Science and Technology, Wuhan 430081, China
dDepartment of Chemistry, The University of Lahore, Lahore, Pakistan
eDepartment of Chemistry, School of Natural Sciences, National University of Sciences and Technology, Islamabad, 44000, Pakistan. E-mail: shoaib03ahmad@outlook.com
fDepartment of Chemistry, Hafiz Hayat Campus, University of Gujrat, Gujrat, Pakistan
gDepartment of Chemistry, COMSATS University Islamabad, Abbottabad Campus, 22060, Abbottabad, Pakistan
hGovernment Postgraduate College No.1 Abbottabad, Abbottabad, Pakistan
iDepartment of Chemistry, University of Sahiwal, Sahiwal, Pakistan
First published on 24th October 2025
Pyridine carbothioamides (PCAs) are recognized for their gastric mucosal protective effects and low in vivo toxicity, making them attractive scaffolds for anticancer drug development. In this study, a series of N-phenyl 4-substituted and 2,4-disubstituted PCAs (1–8) incorporating a sulfonamide pharmacophore were synthesized, fully characterized, and evaluated as tubulin polymerization inhibitors. The compounds were tested against four cancer cell lines (A549, MCF-7, PC-3, HepG2) with colchicine and doxorubicin as reference drugs. Among them, compounds 3 and 5 exhibited potent cytotoxicity, being 2–6-fold more active than colchicine and up to 2.5-fold stronger than doxorubicin in PC-3 cells. Importantly, both showed ∼4-fold lower toxicity toward normal HLMEC cells and displayed higher selectivity towards tested cancer cells than doxorubicin. Tubulin polymerization assays confirmed their activity, with IC50 values of 1.1 μM (3) and 1.4 μM (5), outperforming colchicine (10.6 μM) and CA-4 (2.96 μM). Molecular docking revealed strong binding at the colchicine site, supported by favorable inhibition constants and free binding energies. In silico ADME predictions indicated that the most lipophilic compounds 3 and 5 demonstrated favorable drug-likeness, as expected from computational studies, along with excellent gastrointestinal absorption, favorable bioavailability, and low hemolytic activity. Collectively, these findings highlight compounds 3 and 5 as promising lead candidates for the development of orally active anticancer and antimitotic agents.
Microtubules, integral cytoskeletal filaments, are indispensable in eukaryotic cells.5–8 They play an important role in the maintenance of cell shape and mitotic cell division and ensuring the precise segregation of duplicated chromosomes into two identical sets prior to cleavage of the cell into two daughter cells. The pivotal role of microtubules in mitosis and cell division renders them a critical target for anticancer drugs.9,10 Microtubule targeting agents not only disrupt the mitotic process but also induce apoptotic cell death during interphase,11 exerting their effects through interactions with tubulin at three primary binding sites: the taxane/epothilone, the vinca alkaloid, and the colchicine site. For taxanes and vinca alkaloids, there are many drugs developed. However, these agents are prone to multidrug resistance through P-glycoprotein efflux. In contrast, colchicine-site inhibitors (CSIs) are less susceptible to MDR and thus attractive alternatives.12–14 Combretastatin A-4 (CA-4) and its prodrug fosbretabulin illustrate the promise of CSIs, though issues of solubility and stability have limited their development.15–17
Sulfonamides represent an important class of pharmacologically active agents, with drugs containing this pharmacophore widely employed for the treatment of numerous diseases. Sulfonamide containing compounds have been used in clinical trials for years owing to their various pharmacological activities including anti-bacterial,18,19 anti-inflammatory,20 anti-diabetic,21,22 antimalarial,23,24 antiviral,25,26 carbonic anhydrase inhibitors,27,28 anti-tubercular,29 antioxidant,30,31 and anticancer.32 Over 150 FDA-approved drugs incorporate sulfonyl groups, including celecoxib, meloxicam, piroxicam, and sulfasalazine.33,34 Sulfonamides are versatile pharmacophores present in many FDA-approved drugs with diverse activities, including anticancer effects. Clinically relevant examples include belinostat (HDAC inhibitor for T-cell lymphoma),35,36 amsacrine (topoisomerase II inhibitor for leukemia and lymphomas),37 and dabrafenib (BRAF inhibitor for melanoma)38 (Fig. 1). In addition, several sulfonamide derivatives such as ABT-751 (E7010), batabulin, and T900607 have advanced to clinical trials as colchicine-site tubulin inhibitors, though their progress has been limited by toxicity, solubility, or resistance issues (Fig. 2).39–42
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| Fig. 1 Clinically approved anticancer drugs containing a sulfonamide pharmacophore.35,38,49–51 | ||
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| Fig. 2 The lead tubulin polymerization inhibitors bearing the sulfonamide pharmacophore.39,52 | ||
Pyridine-2-carbothioamides (PCAs) are low-toxicity ligands that exhibit potent antiproliferative activity, influenced by phenyl-ring substitutions. Lipophilic derivatives proved strong cytotoxic agents with enhanced drug-likeness.43–45 and a hydroxamic acid-functionalized PCA (JAZZ-90) demonstrated superior cytotoxicity, HDAC inhibition, and anti-angiogenic activity, highlighting their potential as multitargeted anticancer agents.46
Building on these findings and guided by the need for more potent anticancer agents, we hypothesized that functionalizing bioactive pyridine-2-carbothioamides (PCAs) with aryl sulfonamide moieties could yield novel colchicine-site tubulin inhibitors with enhanced potency, selectivity, bioavailability, and drug-like properties. This design was guided by the pharmacophore model for colchicine-site binders, which typically requires a heterocyclic ring (as in ABT-751/E7010-type structures) to improve pharmacological targeting, a substituted aromatic unit with electron-rich or polar features to fit tightly within the binding pocket, and a linker to optimally orient these groups within the binding site.47,48 The synthesized PCA scaffold contributes a pyridine ring and thioamide linker capable of hydrogen-bonding and electronic interactions, while the sulfonamide-substituted phenyl ring introduces additional polarity, cytotoxic potential, and drug-likeness. Notably, these features structurally align with the clinically investigated sulfonamide-based colchicine-site inhibitor ABT-751 (E7010) reinforcing the strategic depth of our design. Inspired by the previously conducted SAR studies of PCAs,44 small substituents (methyl, dimethyl, fluoro, methoxy, and hydroxy) were introduced at the N-phenyl 2- and 4-positions to systematically evaluate the influence of steric hindrance, lipophilicity, and electronic effects on tubulin binding and anticancer activity. The resulting derivatives were systematically evaluated for cytotoxicity against multiple cancer and normal cell lines, tubulin polymerization inhibition, and molecular docking interactions, along with correlations to physicochemical/ADME and hemolytic profiles, to identify promising candidates for orally active anticancer therapy.
The synthesized PCAs 1–8 were characterized by FTIR, NMR, ESI-MS and elemental analysis. The FTIR spectra of the synthesized compounds 1–8 were obtained in the 4000–400 cm−1 range. The FTIR spectra confirmed the presence of a thioamide group in compounds 1–8, with significant C
S stretching vibrations from 1690–1720 cm−1 and modest N–H sharp stretching vibrations in the range of 3355–3439 cm−1. The synthesis of sulfonamide-substituted PCAs 1–8 was also confirmed by the two strong symmetric and asymmetric stretching vibrations of the SO2 group in the range of 1115–1152 cm−1 and 1302–1325 cm−1, respectively. The stretching vibrations of aromatic C–H groups were observed in the 3084–3439 cm−1 range. In compounds 1 and 4–8, the existence of two symmetric and asymmetric vibrations in the range of 3215–3238 cm−1 and 3248–3291 cm−1 revealed the presence of the NH2 group (Fig. 3) while these peaks are not observed in compounds 2 and 3 due to replacement of primary amine hydrogen by methyl groups. In compound 7, the intense broad peak at 3361 cm−1 was assigned to the –OH group while in 8 the two strong symmetric and asymmetric vibrations at 1148 cm−1 and 1320 cm−1 respectively, were assigned to the –NO2 group.
In the 1H NMR spectra of compounds 2–8 in DMSO-d6 (Fig. S1–S7), the presence of thioamide protons resonating at approximately 12 ppm confirmed the formation of compounds. In compounds 4–8 sulfonamide protons were observed as a singlet at about 7 ppm while in compound 2 containing an N-methyl substituted sulfamoyl group [–SO2NH(CH3)] the secondary amide proton was shielded due to the presence of a methyl group and detected at 5.30 ppm. Furthermore, in compound 3 containing an N,N-dimethyl substituted sulfamoyl group [–SO2N(CH3)2], methyl groups protons were observed as a singlet at 2.94 ppm. The pyridine ring protons (H1–H4) were detected in the range of 7.50–8.80 ppm, whereas the aromatic phenyl (H8–12) protons exhibited signals between 6.60–8.03 ppm. In compounds 5–7, the presence of methyl, methoxy and hydroxyl proton(s) were observed as singlets at 3.32 ppm (Fig. 4), 3.79 ppm and 5.59 ppm, respectively.
In the 13C NMR spectra of newly synthesized compounds 2–8 (Fig. S8–S14), the presence of quaternary carbon (C6) confirmed the presence of the thioamide group in the range of 197.2–199.2 ppm. The quaternary carbon of the pyridine ring (C5) was detected at ∼148 ppm whereas in the pyridine ring the quaternary carbon (C10) containing a sulfonamide or N-substituted sulfamoyl group exhibited signals between 134.5–135.5 ppm. In compounds 5–7 the quaternary carbon (C8) containing the electron donating groups was resonating at ∼128 ppm. Similarly, the presence of electron withdrawing substituents in compounds 4 and 8 resulted in downfield shift of quaternary carbon (C8) by ∼25 ppm and was observed in the range of approximately 152.1–153.3 ppm. The chemical shifts of the individual carbon atoms of the pyridine ring were observed at 122.2–149.1 ppm while those attributed to the aromatic phenyl carbons appeared in the range of 116.0–153.3 ppm. In compounds 2 and 3N-methyl substituents were resonating at 29.3 ppm and 37.9 ppm, respectively. Similarly, in compounds 5 and 6, the carbon atoms of methyl and methoxy substituents at the C8 position appeared at 20.9 ppm (Fig. 5) and 56.2 ppm respectively.
The ESI-mass spectra of compounds 2–8 are supported by the formation of a molecular ion with a proton at m/z 308.0541, 322.0662, 312.0254, 308.0531 (Fig. 6), 324.0502, 310.0334 and 339.0239, respectively, which is in close agreement with the calculated values (Fig. S15–S21). The elemental analysis confirmed the formation and purity of the compounds by providing data in close agreement with the theoretical values.
| Compounds | IC50 value (μM) cancer cells | |||
|---|---|---|---|---|
| A549 | MCF-7 | PC3 | HepG2 | |
| 1 | 63 ± 2.5 | >200 | >200 | 71 ± 1 |
| 2 | 6.7 ± 1.3 | 9.1 ± 0.9 | 7.3 ± 0.3 | 5.9 ± 0.3 |
| 3 | 1.3 ± 0.2 | 4.9 ± 0.2 | 2.3 ± 0.4 | 1.2 ± 0.1 |
| 4 | 7.7 ± 1.3 | 12 ± 2.1 | 13 ± 1.8 | 9.1 ± 1.5 |
| 5 | 2.3 ± 0.9 | 5.9 ± 1.1 | 2.9 ± 0.6 | 3.7 ± 0.5 |
| 6 | 14 ± 2.4 | 36 ± 3 | 31 ± 2.7 | 21 ± 3.1 |
| 7 | >200 | >200 | >200 | >200 |
| 8 | >200 | >200 | >200 | >200 |
| Doxorubicin | 0.69 ± 0.02 | 1.78 ± 0.05 | 7.97 ± 0.09 | 1.63 ± 0.03 |
| Colchicine | 0.043 ± 0.01 | 10.44 ± 0.15 | 4.36 ± 0.11 | 7.38 ± 0.15 |
Among all the synthesized PCAs bearing sulfonamide, compounds 2, 3 and 5 exhibited potent cytotoxicity against all investigated cancer cell lines with IC50 values in the low micro molar range of 1.2–9.1 μM. However, compound 4 containing the o-fluoro substituent showed slightly reduced anticancer activity (7.7–13 μM) compared with the most active compounds 2, 3 and 5. A moderate antiproliferative behaviour was exhibited by compound 6 bearing the o-methoxy substituent with an IC50 value in the range of 14–36 μM. On the other hand, the already reported sulfonamide-substituted PCA 1 showed moderate cytotoxicity against A549 (IC50 = 63 μM) and HepG2 (IC50 = 71 μM), Interestingly, in our previous study the mono-substituted PCA containing the sulfonamide moiety 1 showed moderate cytotoxicity to inactivity against HCT116, NCI-H460, SiHa and SW480 cancer cells while the addition of a second substituent at the N-phenyl 2-position in compounds 4 and 5 or the replacement of the hydrogen atoms of the NH2 group of sulfonamides with methyl groups in 2 and 3 resulted in a marked increase in anticancer activity. However, compounds 7 and 8 bearing –OH and –NO2 groups as second substituents proved inactive, respectively.
In comparative analysis, compound 3 proved as the most cytotoxic agent (1.2–4.9 μM) against all investigated cancer cells and displayed 2-, 3.5- and 6-fold higher potency against MCF-7, PC3 and HePG2, respectively than reference drug colchicine. Similarly, in comparison to colchicine, the second most active compound 5 revealed ∼1.5 times higher cytotoxicity against PC3 and 2 times higher anticancer activity against MCF-7 and HepG2 cancer cell lines. On the other hand, in comparison with standard anticancer drug doxorubicin, compounds 3 and 5 exhibited ∼2-fold and 2.7-fold higher antiproliferative activity only against PC3 cells, respectively. In general the synthesized compounds observed the following trends in terms of cytotoxicity 3 > 5 > 2 > 4 > 6 > 1 > 7 = 8 (Table 1). Consequently, compounds 3 and 5 demonstrated potent anticancer activity, suggesting their potential as promising candidates for further development.
Additionally, the cytotoxicity of the anticancer-active PCAs (2–6), along with the reference drug doxorubicin, was evaluated against a normal human cell line, human lung microvascular endothelial cells (HLMEC), using the MTT assay (Table 2). Among these, the most potent anticancer compounds, 3 and 5, exhibited minimal cytotoxicity toward HLMEC cells, with IC50 values of 63.29 μM and 62.11 μM, respectively. In contrast, the moderately active PCAs 2, 4, and 6 showed moderate cytotoxicity toward HLMEC cells, with IC50 values of 48.53 μM, 35.71 μM, and 29.45 μM, respectively. Comparative analysis revealed that compounds 3 and 5 demonstrated approximately 4-fold lower toxicity against HLMEC cells than doxorubicin (IC50 = 15.91 μM). However, compound 6 was notably more cytotoxic towards normal cells, exhibiting nearly 2-fold higher toxicity than doxorubicin. Overall, the relative cytotoxicity of the synthesized PCAs (2–6) against HLMEC cells, compared with doxorubicin, followed the order: 6 > doxorubicin > 4 > 2 > 5 > 3.
| Compounds | IC50 value (μM) normal cells |
|---|---|
| HLMEC | |
| 2 | 48.53 ± 1.3 |
| 3 | 63.29 ± 1.9 |
| 4 | 35.71 ± 2.2 |
| 5 | 62.11 ± 1.5 |
| 6 | 9.45 ± 1.2 |
| Doxorubicin | 15.91 ± 1.8 |
| Compounds | Selectivity index (SI) | |||
|---|---|---|---|---|
| A549 | MCF-7 | PC3 | HepG2 | |
| 2 | 7.24 | 5.33 | 6.66 | 8.22 |
| 3 | 48.68 | 12.91 | 27.51 | 52.74 |
| 4 | 4.63 | 2.97 | 2.74 | 3.92 |
| 5 | 27.0 | 10.52 | 21.41 | 16.78 |
| 6 | 0.67 | 0.26 | 0.30 | 0.45 |
| Doxorubicin | 23.05 | 8.9 | 1.99 | 9.76 |
| Compounds | IC50 value (μM) |
|---|---|
| Tubulin polymerization inhibition | |
| 1 | >100 |
| 2 | 29.7 ± 2.3 |
| 3 | 1.1 ± 0.1 |
| 4 | 2.7 ± 0.1 |
| 5 | 1.4 ± 0.09 |
| 6 | 45.2 ± 2.1 |
| 7 | 59.6 ± 3.3 |
| 8 | 7.3 ± 0.2 |
| CA-4 | 2.93 ± 0.02 |
| Colchicine | 10.5 ± 0.03 |
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| Fig. 7 Graphical representation of tubulin polymerization inhibitory activity IC50 (μM) of PCAs 1–8 and reference drugs CA-4 and colchicine. | ||
In comparison, as the most potent inhibitor of microtubules 3 manifested ∼2.5 and ∼9.5 times higher inhibitory activity than reference drugs CA-4 and colchicine, respectively. Similarly, compounds 5 exhibited 2- and ∼7.5-fold higher tubulin inhibitory potential than CA-4 and colchicine, respectively, while compound 4 displayed ∼4-fold antimitotic capacity than colchicine. On the other hand, compound 8 demonstrated ∼1.5 times higher microtubule inhibition than colchicine. The results suggest that tubulin inhibition may contribute to the observed cytotoxic activity; however, additional studies such as apoptosis assays, cell-cycle analysis, and microtubule imaging will be necessary to fully elucidate the underlying mechanism of action. In future work, we plan to conduct these studies to determine the precise mechanism of action of these compounds. Nonetheless, the present findings provide a strong foundation for the further development and optimization of sulfonamide-functionalized PCAs, particularly the lead molecules 3 and 5, as promising anticancer agents.
700 nM, respectively. Compounds 3, 4 and 5 showed strong binding potentials towards tubulin with inhibition constants in the low nanomolar range of 1.26–9.58 nM and revealed slightly stronger binding energies (−13.57 to −14.91 kcal mol−1) than that of CA-4 with inhibition constant = 11.92 nM and binding energy −13.39 kcal mol−1 which is consistent with the previously reported value of −13.42 kcal mol−1.63 However, the rest of compounds 2, 6, 7 and 8 with moderate inhibition constants (18.35–67.13 μM) showed lower free binding energies (−12.55 to −9.79 kcal mol−1) than that of CA-4, while compound 1 exhibited the lowest binding energy of −8.66 kcal mol−1 and proved inactive (inhibition constant = 83
700 nM) towards tubulin enzyme. Notably, lead compounds 3 and 5 demonstrated outstanding binding energies and inhibition constants along with excellent tubulin inhibitory and cytotoxic potential, and could be developed as potent anticancer agents targeting tubulin polymerization.
| Compounds | Inhibition constant (nM) | Binding energy (kcal per mole) |
|---|---|---|
| 1 | 83 700 |
−8.66 |
| 2 | 37.6 | −11.36 |
| 3 | 1.26 | −14.91 |
| 4 | 9.58 | −13.57 |
| 5 | 4.30 | −14.05 |
| 6 | 52.95 | −9.93 |
| 7 | 67.13 | −9.79 |
| 8 | 18.35 | −12.55 |
| CA-4 | 11.92 | −13.39 |
In 3D molecular docking analysis, the synthesized PCAs 1–8 exhibited strong hydrogen bonding and several lipophilic interactions with amino acid residues within the colchicine binding pocket of the tubulin enzyme (Fig. 8). Moreover, to perform a comparative analysis, we docked the reference drug CA-4 within the colchicine binding site of tubulin. CA-4 exhibited one hydrogen bond with Thr353(B) via one of the methoxy groups of the trimethoxylated phenol moiety, along with five carbon–hydrogen bond interactions with Val315(B), Asn350(B), Asn258(B), Ala317(B), and Thr179(A) through the methoxy groups of both phenolic moieties. In addition, CA-4 exhibited a π–σ interaction with Leu248(B) through the phenolic moiety containing 3,4,5-trimethoxy groups and showed six π–alkyl interactions with Ala354(B), Ala316(B), Ala180(A), Val181(A), Lys352(B), and Met259(B) through both phenyl rings and their attached methoxy groups. These interactions contributed to the stability of the ligand–protein complex, with a binding energy of −13.39 kcal mol−1.
In comparative analysis, the most potent inhibitor of tubulin 3 showed two H-bonds with Asn101(A) and Lys254(B) through one oxygen atom of the sulfonyl group and two C–H bonds with Ser178(A) and Glu183(A) through the amine group of the sulfonamide moiety. Moreover, the pyridine and phenyl ring of compounds 3 demonstrated seven pi–alkyl interactions with Ala180(A), Ala250(B), Ala316(B), Lys352(B), Met259(B), Val181(A), Leu248(B) improving significantly the stability of the ligand/receptor complex to score the best free binding energy of −14.91 kcal mol−1 among the docked compounds. Compound 5, the second most potent tubulin inhibitor in the series, formed one hydrogen bond with Val315(B) via the oxygen atom of the SO2 group. Additionally, Thr314(B) and Asp251(B) established two C–H interactions with the sulfonamide moiety and the pyridine ring, respectively. Moreover, the pyridine and phenyl ring formed eight lipophilic interactions involving one pi–sulfur with Met259(B), two pi–sigma interactions with Ala250(B) and Leu255(B), and five pi–alkyl interactions with Ala180(B), Ala181(B), Ala316(B), Leu248(B), and Lys352(B), which augmented the ligand/receptor complex stability with an excellent free binding energy of −14.05 kcal mol−1. Compound 4, ranked as the third highest inhibitor of tubulin, formed two hydrogen bonds with Ala317(B) and Lys352(B) through –NH2 of the sulfonamide moiety. Also, it formed two additional hydrogen bonds with Val238(B) and Cys241(B) through –NH of thioamide and the o-fluoro substituent in the phenyl ring, respectively. Moreover, the additional lipophilic interactions involved two pi–sigma, one pi–sulfur and five pi–alkyl interactions with the pyridine and phenyl ring resulting in an increased stability of the ligand/receptor complex with a free binding energy of −13.57 kcal mol−1. Surprisingly, the PCA derivative 8 bearing the nitro substituent proved inactive in the cytotoxic assay but ranked fourth both in tubulin inhibition and docking studies and demonstrated a significant inhibition constant (18.35 nM) with a free binding energy of −12.55 kcal mol−1. In compound 8, the amine group of sulfonamide formed two H-bonds with Val315(B) and Asn350(B), and one H-bond with Asn258(B) through the nitro substituent in the phenyl ring. Furthermore, one additional C–H bond with Thr314(B) and several lipophilic interactions with Leu255(B), Met259(B), Ala250(B), Ala316(B), and Cys241(B) may contributed its enhanced interaction towards tubulin enzyme.
The PCA derivatives 2, 6 and 7, which showed moderate tubulin inhibition activity among the synthesized compounds, showed moderate binding affinities of −11.36 kcal mol−1, −9.93 kcal mol−1 and −9.79 kcal mol−1 respectively which are comparatively lower than 3, 4, 5 and CA-4.
In further investigation, the oxygen atoms and amine group of the sulfonamide moiety of compounds 2 and 6 demonstrated three H-bonds with Val238(B), Leu242(B), Cys241(B) and Val315(B), Met259(B), Asn350(B), respectively. Unfortunately, compound 7 established the highest four H-bonds among the docked compounds with Val315(B), Lys254(B), Asn258(B), and Leu255(B) through the oxygen and amine of sulfonamide, –NH of thioamide and hydroxyl group of the phenyl ring but showed moderate binding affinity towards tubulin enzyme. Likewise other compounds, ligands 2, 6 and 7 formed several lipophilic interactions with the pyridine and phenyl ring. However, in the series only compound 1 established one H-bond with Val315(B) through the amine of the sulfonamide moiety, hence resulting in a very weak binding affinity of −8.66 kcal mol−1, and also proved inactive in tubulin inhibition assay. These in silico observations revealed that 3 and 5 containing strong electron donating N,N-dimethyl and methyl substituents manifested the highest binding interactions, affinities and inhibition constants as compared to reference drug CA-4, indicating their potential as lead structures for further exploration as tubulin assembly inhibitors.
While molecular docking in this study provides useful preliminary insights into binding orientations and relative affinities, its static nature and simplified scoring functions limit accuracy in capturing protein flexibility and solvent effects. More advanced computational methods, such as molecular dynamics (MD) simulations and free energy calculations (FEP/MM-PBSA), could offer deeper and more reliable insights into protein–ligand interactions. These approaches were beyond the scope of the present study due to resource and expertise constraints but will be considered in future work to further validate the findings.
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| Fig. 9 Percentage of haemolysis of mouse blood cells induced by sulfonamide-substituted PCAs 3 and 5 at various concentrations in comparison to doxorubicin.65 | ||
P). The octanol/water partition coefficients (clog
P) of the sulfonamide-substituted PCAs 1–8 were evaluated using ChemDraw 12.0, Molinspiration (https://www.molinspiration.com), and ALOGPS 2.1 and compared with standard anticancer drugs doxorubicin and colchicine (Tables S2 and 6). The Lipinski rule-of-five suggested that compounds with a log
P value between 0 and 3 are ideal for oral administration due to their balance of solubility and permeability.69,70 In this investigation, compounds 1–8 reflected optimum solubility in the range of 1.13–2.67, indicating a favourable balance of solubility and permeability. Moreover, compounds 1–5 exhibited higher lipophilicity (1.52–2.05) than the reference dugs doxorubicin and colchicine i.e. 1.41 and 1.50, respectively. However, the following trend was observed within the synthesized compounds in terms of lipophilicity 3 > 5 > 2 > 4 > 1 > 6 > 8 > 7. Generally, in line with previously reported PCAs,44 the cytotoxicity of compounds 1–8 increases with the increase in lipophilicity. Interestingly, compounds 3 and 5 (containing strong electron donating N,N-dimethyl and methyl substituents) with the highest log
P value of 2.05 and 2.0 respectively, revealed their highest tendency towards gastrointestinal and cellular absorption which is also reflected in their potential as strong cytotoxic agents with potent inhibition of microtubules.
P and druglikeness QEDmow values of PCAs 1–8
| Compounds | clog P |
QEDmow |
|---|---|---|
| 1 | 1.52 | 0.840 |
| 2 | 1.87 | 0.813 |
| 3 | 2.05 | 0.855 |
| 4 | 1.67 | 0.847 |
| 5 | 2.00 | 0.845 |
| 6 | 1.39 | 0.819 |
| 7 | 1.13 | 0.819 |
| 8 | 1.27 | 0.636 |
| Doxorubicin | 1.41 | 0.234 |
| Colchicine | 1.50 | 0.732 |
S = 6), polarity (TPSA = 20 to 130 Å), saturation (sp3 hybridised carbon = 0.25 percent), and flexibility (less than 9 rotatable bonds).71 The drug-like region is often represented by a pink area on the graph, and compounds with physiochemical properties lying inside this range are regarded more promising for drug development. The bioavailability radar of synthesized compounds 1–8 and the reference drugs doxorubicin 9 and colchicine 10 exhibited ideal bioavailability patterns (Fig. 10) with all the parameters found in the compatible range suggesting good drug-likeness and potential for oral bioavailability. However, the synthesized compounds 1–8 and doxorubicin 9 revealed one offshoot value i.e. higher unsaturation and increase polarity respectively, but all of the other parameters were found to be within the suitable range, indicating drug-likeness and oral bioavailability.
P-glycoprotein (PGP) acts as an active efflux pump, removing xenobiotics and numerous toxins from cells while also playing a key role in drug extraction and absorption. In the BOILED-egg image, the blue (PGP+) and red (PGP−) dots indicate whether the chemical can or cannot be effluxed from the central nervous system (CNS), respectively.73 In the current study, compounds 1–8 are indicated as red dots, implicating that these molecules do not bind to p-glycoprotein, indicating a negative PGP impact while the colchicine 9 showed PGP positive behavior (blue dots) reflecting that it can be actively effluxed from the central nervous system.
It should be noted that these drug-likeness, bioavailability radar, and BOILED-egg predictions are based solely on in silico models and therefore provide only preliminary indications of absorption and bioavailability; experimental validation through in vitro permeability assays (e.g., PAMPA, Caco-2) was not performed in the present study due to resource constraints, but will be considered in our future work to strengthen these findings.
A Bruker Avance AVIII 400 MHz NMR spectrometer at the COMSATS University Islamabd, Abbottabad Campus, Abbottabad was used to record the NMR spectra at room temperature at 400.13 MHz (1H) or 100.61 MHz (13C) using DMSO-d6 as the solvent. SpinWorks (3.1) was used for visualization and basic processing of NMR data. A Shimadzu FT-IR Prestige-21 infrared spectrophotometer at the Government College Women University Sialkot, Sialkot, Pakistan was used to record the FTIR spectra using KBr plates in the 4000–400 cm−1 range. The FTIR graph was processed and plotted using OriginPro software. High resolution mass spectra were recorded in the positive electron spray ionization mode on a MaXis II-ESI-QTOF at the HEJ Research Institute of Chemistry, University of Karachi, Karachi, Pakistan. The elemental analyses were carried out using LECO's CHNS-932 Elemental Analyzer at the University of Sargodha, Sargodha, Pakistan.
Compound 1 was synthesized and characterized by NMR, mass spectrometry and elemental analysis by using the reported method.53
m.p. 146 °C. IR (KBr, cm−1):
= 3423 (m) (–NH), 3277, 3228 (m) (–NH2), 3122 (m) (CHarom), 1726 (s) (C
S), 1322, 1143 (s) (–SO2).
Compound 2 was synthesized by following the general procedure using 4-amino-N-methylbenzenesulfonamide (2.327 g, 12.5 mmol), sulfur (0.96 g, 30 mmol), sodium sulfide nonahydrate (0.15 g, 5 mol%) and 2-picoline (2.46 mL, 25 mmol). Yield: 2.84 g (73%); m.p. 152 °C. IR (KBr, cm−1):
= 3411 (m) (–NH), 3115 (m) (CHarom), 1708 (s) (C
S), 1309, 1123 (s) (–SO2). 1H NMR (400.13 MHz, DMSO-d6, 25 °C) δ = 11.99 (s, 1H, –NH), 8.64 (d, 3J = 5 Hz, 1H, H-4), 8.52 (d, 3J = 8 Hz, 1H, H-1), 8.02 (td, 3J = 8 Hz, 4J = 1 Hz, 1H, H-3), 7.71 (d, 3J = 9 Hz 2H, H-9/H-11), 7.61 (m, 1H, H-2), 6.60 (d, 3J = 9 Hz, 2H, H-8/H-12), 5.30 (s, 1H, –SO2NH), 2.94 (s, 3H, –SO2NCH3) ppm. 13C{1H}NMR (100.61 MHz, DMSO-d6, 25 °C): δ = 198.2 (C-6), 148.7 (C-1), 148.4 (C-5), 136.8 (C-3), 135.6 (C-10), 132.0 (C-7), 127.8 (C-9/C-11), 124.7 (C-2), 122.3 (C-4), 118.6 (C-8/C-12), 29.3 (–SO2N(CH3)) ppm. MS (ESI+): m/z 308.0541 [2 + H]+ (m/zcalc 308.0527). Anal. found: C, 50.92; H, 3.97; N, 13.93; calc. for C16H14N2O3: C, 50.80; H, 4.26; N, 13.67.
Compound 3 was synthesized by following the general procedure using 4-amino-N,N-dimethylbenzenesulfonamide (2.503 g, 12.5 mmol), sulfur (0.96 g, 30 mmol), sodium sulfide nonahydrate (0.15 g, 5 mol%) and 2-picoline (2.46 mL, 25 mmol). Yield: 3.17 g (78%); m.p. 158 °C. IR (KBr, cm−1):
= 3397 (m) (–NH), 3095 (m) (CHarom), 1697 (s) (C
S), 1302, 1115 (s) (–SO2). 1H NMR (400.13 MHz, DMSO-d6, 25 °C) δ = 12.11 (s, 1H, –NH), 8.66 (d, 3J = 7 Hz, 1H, H-4), 8.55 (d, 3J = 8 Hz, 1H, H-1), 8.04 (td, 3J = 7 Hz, 4J = 1 Hz, 1H, H-3), 7.92 (m, 2H, H-8/H-12), 7.64 (ddd, 3J = 7 Hz, 4J = 1 Hz, 1H, H-2), 6.78 (d, 3J = 9 Hz, 2H, H-9/H-11), 2.95 (s, 6H, –SO2N(CH3)2) ppm. 13C{1H}NMR (100.61 MHz, DMSO-d6, 25 °C): δ = 198.1 (C-6), 148.8 (C-1), 148.3 (C-5), 136.7 (C-3), 134.5 (C-10), 132.2 (C-7), 127.9 (C-9/C-11), 124.8 (C-2), 122.4 (C-4), 118.8 (C-8/C-12), 37.9 (–SO2N(CH3)2) ppm. MS (ESI+): m/z 322.0662 [3 + H]+ (m/zcalc 322.0684). Anal. found: C, 52.05; H, 4.59; N, 12.87; calc. for C16H14N2O3: C, 52.32; H, 4.70; N, 13.07.
Compound 4 was synthesized by following the general procedure using 4-amino-3-fluorobenzenesulfonamide (2.377 g, 12.5 mmol), sulfur (0.96 g, 30 mmol), sodium sulfide nonahydrate (0.15 g, 5 mol%) and 2-picoline (2.46 mL, 25 mmol). Yield: 3.27 g (83%); m.p. 138 °C. IR (KBr, cm−1):
= 3439 (m) (–NH), 3291, 3238 (m) (–NH2), 3129 (m) (CHarom), 1735 (s) (C
S), 1325, 1152 (s) (–SO2). 1H NMR (400.13 MHz, DMSO-d6, 25 °C) δ = 12.01 (s, 1H, –NH), 8.80 (d, 3J = 7 Hz, 1H, H-4), 8.56 (d, 3J = 8 Hz, 1H, H-1), 8.03 (m, 2H, H-9/H-11), 7.90 (td, 3J = 7 Hz, 4J = 1 Hz, 1H, H-3), 7.50 (ddd, 3J = 7 Hz, 4J = 1 Hz, 1H, H-2), 7.15 (d, 3J = 9 Hz, 1H, H-12), 7.42 (s, 2H, –SO2NH2) ppm. 13C{1H}NMR (100.61 MHz, DMSO-d6, 25 °C): δ = 197.9 (C-6), 153.3 (C-8), 148.9 (C-1), 148.1 (C-5), 136.8 (C-7), 136.3 (C-10), 127.8 (C-11), 125.5 (C-3), 124.7 (C-2), 122.3 (C-4), 120.7 (C-12), 116.0 (C-9) ppm. MS (ESI+): m/z 312.0254 [4 + H]+ (m/zcalc 312.0277). Anal. found: C, 45.96; H, 3.08; N, 13.62; calc. for C16H14N2O3: C, 46.29; H, 3.24; N, 13.50.
Compound 5 was synthesized by following the general procedure using 4-amino-3-methylbenzenesulfonamide (2.340 g, 12.5 mmol), sulfur (0.96 g, 30 mmol), sodium sulfide nonahydrate (0.15 g, 5 mol%) and 2-picoline (2.46 mL, 25 mmol). Yield: 2.69 g (69%); m.p. 154 °C. IR (KBr, cm−1):
= 3355 (m) (–NH), 3248, 3215 (m) (–NH2), 3095 (m) (CHarom), 1705 (s) (C
S), 1311, 1119 (s) (–SO2). 1H NMR (400.13 MHz, DMSO-d6, 25 °C) δ = 12.21 (s, 1H, –NH), 8.67 (d, 3J = 6 Hz, 1H, H-4), 8.53 (d, 3J = 8 Hz, 1H, H-1), 8.04 (td, 3J = 8 Hz, 4J = 1 Hz, 2H, H-3), 7.85 (d, 3J = 9 Hz, 2H, H-9/H-11), 7.65 (m, 1H, H-2), 7.26 (d, 3J = 8 Hz, 1H, H-12), 7.32 (s, 2H, –SO2NH2), 3.32 (s, 3H, –CH3) ppm. 13C{1H}NMR (100.61 MHz, DMSO-d6, 25 °C): δ = 197.2 (C-6), 148.9 (C-1), 148.5 (C-5), 136.9 (C-3), 136.5 (C-10), 133.8 (C-7), 128.4 (C-8), 128.1 (C-9), 127.8 (C-11), 124.6 (C-2), 122.2 (C-4), 120.8 (C-12), 20.9 (–CH3) ppm. MS (ESI+): m/z 308.0531 [5 + H]+ (m/zcalc 308.0527). Anal. found: C, 50.64; H, 4.51; N, 13.83; calc. for C16H14N2O3: C, 50.80; H, 4.26; N, 13.67.
Compound 6 was synthesized by following the general procedure using 4-amino-3-methoxybenzenesulfonamide (2.527 g, 12.5 mmol), sulfur (0.96 g, 30 mmol), sodium sulfide nonahydrate (0.15 g, 5 mol%) and 2-picoline (2.46 mL, 25 mmol). Yield: 2.94 g (72%); m.p. 149 °C. IR (KBr, cm−1):
= 3384 (m) (–NH), 3256, 3218 (m) (–NH2), 3084 (m) (CHarom), 1712 (s) (C
S), 1316, 1128 (s) (–SO2). 1H NMR (400.13 MHz, DMSO-d6, 25 °C) δ = 12.19 (s, 1H, –NH), 8.66 (d, 3J = 5 Hz, 1H, H-4), 8.54 (d, 3J = 9 Hz, 1H, H-1), 8.03 (td, 3J = 8 Hz, 4J = 2 Hz, 2H, H-3), 7.89 (d, 3J = 9 Hz, 2H, H-9/H-11), 7.64 (m, 1H, H-2), 7.01 (d, 3J = 9 Hz, 1H, H-12), 7.19 (s, 2H, –SO2NH2), 3.79 (s, 3H, –OCH3) ppm. 13C{1H}NMR (100.61 MHz, DMSO-d6, 25 °C): δ = 198.6 (C-6), 149.1 (C-1), 148.7 (C-5), 144.8 (C-11), 136.8 (C-3), 133.3 (C-7), 127.8 (C-8), 127.5 (C-3), 124.7 (C-2), 122.3 (C-4), 120.7 (C-12), 116.0 (C-7), 56.2 (–OCH3) ppm. MS (ESI+): m/z 324.0502 [6 + H]+ (m/zcalc 324.0477). Anal. found: C, 48.06; H, 3.95; N, 12.91; calc. for C16H14N2O3: C, 48.28; H, 4.05; N, 12.99.
Compound 7 was synthesized by following the general procedure using 4-amino-3-hydroxybenzenesulfonamide (2.352 g, 12.5 mmol), sulfur (0.96 g, 30 mmol), sodium sulfide nonahydrate (0.15 g, 5 mol%) and 2-picoline (2.46 mL, 25 mmol). Yield: 3.56 g (91%); m.p. 135 °C. IR (KBr, cm−1):
= 3405 (m) (–NH), 3361 (s) (OH), 3283, 3225 (m) (–NH2), 3110 (m) (CHarom), 1709 (s) (C
S), 1315, 1124 (s) (–SO2). 1H NMR (400.13 MHz, DMSO-d6, 25 °C) δ = 12.35 (s, 1H, –NH), 8.69 (d, 3J = 5 Hz, 1H, H-4), 8.52 (d, 3J = 7 Hz, 1H, H-1), 8.04 (td, 3J = 8 Hz, 4J = 2 Hz, 1H, H-3), 7.99 (d, 3J = 9 Hz, 2H, H-9/H-11), 7.66 (m, 1H, H-2), 7.51 (d, 3J = 9 Hz, 1H, H-12), 7.33 (s, 2H, –SO2NH2), 5.59 (s, 1H, –OH) ppm. 13C{1H}NMR (100.61 MHz, DMSO-d6, 25 °C): 197.3 (C-6), 148.6 (C-1), 148.6 (C-5), 136.7 (C-3), 136.3 (C-10), 133.2 (C-7), 128.7 (C-8), 128.3 (C-9), 127.6 (C-11), 124.4 (C-2), 122.4 (C-4), 120.5 (C-12) ppm. MS (ESI+): m/z 310.0334 [7 + H]+ (m/zcalc 310.0320). Anal. found: C, 46.72; H, 3.49; N, 13.36; calc. for C16H14N2O3: C, 46.59; H, 3.58; N, 13.58.
Compound 8 was synthesized by following the general procedure using 4-amino-3-nitrobenzenesulfonamide (2.715 g, 12.5 mmol), sulfur (0.96 g, 30 mmol), sodium sulfide nonahydrate (0.15 g, 5 mol%) and 2-picoline (2.46 mL, 25 mmol). Yield: 3.63 g (85%); m.p. 131 °C. IR (KBr, cm−1):
= 3431 (m) (–NH), 3288, 3230 (m) (–NH2), 3126 (m) (CHarom), 1732 (s) (C
S), 1542 (s), (NO2), 1320, 1148 (s) (–SO2). 1H NMR (400.13 MHz, DMSO-d6, 25 °C) δ = 12.45 (s, 1H, –NH), 8.70 (d, 3J = 5 Hz, 1H, H-4), 8.55 (d, 3J = 9 Hz, 1H, H-1), 8.06 (td, 3J = 8 Hz, 4J = 2 Hz, 1H, H-3), 7.94 (d, 3J = 9 Hz, 2H, H-9/H-11), 7.65 (m, 2H, H-2/H-12), 7.43 (s, 2H, –SO2NH2) ppm. 13C{1H}NMR (100.61 MHz, DMSO-d6, 25 °C): δ = 199.2 (C-6), 152.1 (C-8), 149.0 (C-1), 148.7 (C-5), 142.2 (C-3), 132.9 (C-7), 136.5 (C-10), 129.2 (C-11), 127.8 (C-11), 126.8 (C-9), 124.7 (C-2), 122.3 (C-4), 120.7 (C-12) ppm. MS (ESI+): m/z 339.0239 [7 + H]+ (m/zcalc 339.0222). Anal. found: C, 42.94; H, 3.12; N, 16.81; calc. for C16H14N2O3: C, 42.60; H, 2.98; N, 16.56.
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