Open Access Article
Niamh Disney†
ab,
Laura Marraffa†a,
Mert Can Incec,
Philipp Nathoa,
Marco Colella
a,
Gianvito Vilé
*c,
Marcus Baumann
*b and
Renzo Luisi
*a
aFLAME-Lab, Flow Chemistry and Microreactor Technology Laboratory, Department of Pharmacy-Drug Sciences, University of Bari “A. Moro”, Via E. Orabona 4, 70125 Bari, Italy. E-mail: Renzo.Luisi@uniba.it
bSchool of Chemistry, University College Dublin, O'Brien Centre of Science, Belfield, Dublin 4, Ireland. E-mail: marcus.baumann@ucd.ie
cDepartment of Chemistry, Materials, and Chemical Engineering “Giulio Natta”, Politecnico di Milano, Piazza Leonardo da Vinci 32, 20133 Milano, Italy. E-mail: gianvito.vile@polimi.it
First published on 5th June 2026
Electrophilic nitrogen transfer has emerged as a prominent approach in skeletal editing tactics to surgically modify molecular core structures by nitrogen atom insertion, deletion or transmutation. Despite rapid progress in the development of these methodologies, wider adoption is hindered by challenges associated with scale-up and requirement for transformation-dependent re-optimization of reaction conditions. We herein disclose a sustainable continuous-flow protocol, which unifies several skeletal editing tactics leveraging electrophilic nitrogen transfer. We demonstrate that this protocol is applicable to nitrogen atom insertion, deletion, nitrile formation and aziridination. We furthermore evaluate the sustainability parameters of our continuous-flow protocol compared to state-of-the-art batch protocols through a currently unprecedented life cycle assessment and technoeconomic analysis.
Green foundation1. This work introduces a unified continuous-flow platform for multiple electrophilic nitrogen transfer reactions, replacing diverse batch protocols with a single, safer and more controllable system, thereby enhancing efficiency, scalability, and process intensification.2. The methodology combines flow chemistry with a comprehensive sustainability assessment, integrating LCA, TEA, and planetary boundary metrics. This quantitatively demonstrates reduced environmental impact, improved resource efficiency, and economic viability compared to state-of-the-art batch processes. 3. Further greening could be achieved by expanding the use to other reaction partners, recycling the generated PhI, and integrating real-time process monitoring and AI-driven optimization to further minimize waste, energy consumption, and environmental footprint. |
The conceptually straightforward strategy of introducing subtle changes to a given core structure by inclusion of nitrogen atoms in advanced lead compounds to fine-tune their properties, however, is in practice a time- and resource-intensive process because it requires de novo synthesis of the desired nitrogen-containing analogue. Addressing this drawback, skeletal editing strategies have provided novel approaches for structural late-stage diversification by selectively editing complex organic molecules at the atomic level.6–8 The direct interconversion of carbocycles to nitrogen-containing heterocycles thus offers an orthogonal retrosynthetic disconnection compared to the classic forward-design, which can accelerate drug discovery by late-stage modification of existing libraries for structure–activity relationship (SAR) studies.
Within the context of skeletal editing, the modification of molecular core structures by nitrogen atom insertion,9–15 deletion,16–18 or transmutation19–24 (N–O, N–C or N–S atom exchange) has emerged as a particularly prominent approach, and numerous methods have been developed in recent years to achieve selective core modulation transformations. Despite these studies, a recurring theme within single nitrogen atom editing tactics is the synergistic combination of hypervalent iodine(III) oxidants with ammonia sources, which generates in situ a highly electrophilic iodonitrene intermediate capable of electrophilic amination, facilitating the formation of C–N, N–N, and S–N bonds (Fig. 1b).25,26 We note at this point, that there is an ongoing debate on the exact nature of the mechanism and electrophilic intermediate, which we refer to as “iodonitrene” in this work.27 This powerful reactivity in combination with the operational simplicity of iodonitrene intermediates has led to the development of several next-generation synthetic processes.
In the context of N-insertion reactions, iodonitrenes enable the surgical introduction of a single nitrogen atom into carbo- and heterocycles such as indenes, indoles, and pyrroles.13–15 This approach provides access to heterocyclic scaffolds otherwise difficult to access and holds considerable promise in drug discovery. In addition, single nitrogen atoms can be inserted into weak π-bonds of alkenes, abundant feedstock chemicals, to allow the divergent synthesis of aziridines or nitriles from the same starting materials.12,28,29 In the context of N-deletion strategies, iodonitrenes can participate in ring-opening processes that lead to the loss of molecular nitrogen, enabling the generation of reactive intermediates under controlled conditions. This allows chemists to selectively excise nitrogen atoms from heterocycles, thereby converting stable nitrogen-containing motifs into structurally modified products with new reactivity and function.18
Despite the abundance of skeletal editing tactics leveraging iodonitrene-based chemistry, the broader adoption of these processes is limited by two key drawbacks. First, in practice, each transformation is reliant on distinct reaction conditions, requiring laborious (re-)optimization of parameters, such as hypervalent iodine precursor, solvent, reaction time, ammonia source, temperature and stoichiometry. Second, the in situ formation of the electrophilic iodonitrene intermediate is highly exothermic, which under typical batch conditions can limit substrate scope and reaction control. Moreover, when such methods are considered for the synthesis of agrochemicals or active pharmaceutical ingredients, the reliance on batch processing, which remains the current state-of-the-art, can introduce additional complications during scale-up and may entail intrinsic drawbacks in terms of safety, economic efficiency, and environmental impact.11
In light of the increasing environmental pressures placed on fine-chemical producers by regulatory frameworks, there is a growing need to shift reaction development from what is synthetically possible to processes that align synthetic efficiency with environmental responsibility, safety, and scalability.30,31 The development of green-by-design processes thus avoids retrofitting of these attributes to non-sustainable routes at later stages of process development and provides a practical, actionable framework for the sustainable manufacture of high-value fine chemicals. Continuous-flow processing has received particular attention as an enabling technology to address the aforementioned limitations, as it can enhance safety, scalability, and process control, by improving heat and mass transfer. In addition, precise control of residence times can allow for notable improvements in chemoselectivity which cannot be achieved under classical batch conditions.32,33
Leveraging the intrinsic benefits brought about by continuous-flow processing,34,35 we herein present a unified, straightforward continuous-flow strategy on the basis of four previously developed iodonitrene-based editing tactics in batch.12,14,18,28 These synthetic and technological advances are further supported by the first comprehensive life-cycle assessment (LCA) and techno-economic analysis (TEA), enabling direct comparison of sustainability and economic performance with previously reported batch protocols (Fig. 1c).36,37
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| Scheme 1 a) State-of-the-art continuous-flow setup for nitrogen insertion (Morandi, 202511); (b) our general design concept; (c) optimized conditions for the desired editing tactics; and (d) comparative evaluation between the state-of-the-art continuous-flow conditions (teal blue) and the continuous-flow protocol developed in this study (light blue) with respect to key economic and environmental indicators. | ||
Thus, this would not only significantly simplify the microfluidic setup by reducing the number of inlet streams and eliminating gaseous inlets, but also prevent issues associated with solid accumulation of ammonium carbamate (“clogging”) due to its low solubility in non-aqueous solvents. Although there are hazards associated with the use of aqueous ammonia, handling in a closed continuous-flow setup maximizes user safety by minimizing exposure.39 Furthermore, to address our techno-economic objectives, we focused on the use of (diacetoxyiodo)benzene (PIDA) instead of the more costly (bis(trifluoroacetoxy)iodo)benzene (PIFA).
With the design targets clearly set out, we began process development by optimizing the remodeling of the indene core by N-atom insertion toward isoquinolines (Scheme 1c). Careful screening of various process parameters including internal volume, flow rate, residence time and reagent equivalents (see the SI for further details) showed that optimal results were obtained when using 20 equivalents of aqueous ammonia solution and three equivalents of PIDA mixed together via a four-way mixer. A residence time of only 48 seconds at 0 °C ensured full conversion of the substrate. To our delight and in line with our target, we found that process translation to other core remodeling tactics required only minimal adjustments of individual process parameters: for example, N-deletion of pyrrolidines was performed with slight reduction of equivalents of aqueous ammonia (8 equiv. vs. 20 equiv.). Also, the conversion of alkenes to nitriles and aziridines could be performed with the same setup. For the conversion to nitriles, we found that the best results were obtained with a lower quantity of aqueous ammonia (10 equiv.) and a higher excess of PIDA (4–5 equiv.), whereas the optimal results for NH-aziridination were observed with a high excess of aqueous ammonia (40 equiv.) and slightly shorter residence times (27 seconds).
With the optimized reaction conditions in hand, we first assessed if the optimized simple setup indeed provided techno-economic advantages. We thus benchmarked our protocol for the state-of-the-art continuous-flow protocol11 (Scheme 1a) for the conversion of 2-methylindene 1b to isoquinoline 2b in terms of its techno-economic performance and environmental sustainability (Scheme 1d). Both approaches were examined within a framework encompassing three key economic indicators and three major environmental metrics, centering operational expenditure, raw-material and electricity cost, carbon emission, ocean acidification, and water consumption (for further details, see SI Tables S1–S9). Our developed reaction conditions demonstrated order of magnitude reductions in OpEx (87%) and raw material cost (93%) compared to the previous state-of-the-art conditions (Scheme 1a). These reductions are considerable, and were primarily attributed to the cost-intensive reliance on MeOD and PIFA, as these components can account for 97% of the total raw material costs. Moreover, the implementation of our conditions led to reductions in carbon emissions, ocean acidification, and water consumption of 81%, 94%, and 92%, respectively. Across these reductions, environmental hotspots were mainly associated with the use of PIFA.
Encouraged by the improvement of the conditions with respect to the state-of-the-art continuous-flow conditions, we turned our attention to exploring the substrate scope (Scheme 2). We began our investigation with nitrogen insertion into indenes, and thus a series of 2- and 3-substituted indenes were converted to the corresponding substituted isoquinolines 2a–2i in up to 75% yield. Aliphatic and aromatic substituents were tolerated on the five-membered ring without a notable effect on the efficiency of the process. Notably, the sensitive thiophene motif was also tolerated under the basic reaction conditions to afford isoquinoline 2g in 53% yield. Unexpectedly, the presence of a bromine substituent on the benzene ring led to a reduction in process efficiency, affording the desired isoquinolines 2h and 2i in 33–35% yields, although the reasons for this reduction remain unclear.
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| Scheme 2 Substrate scope of atom deletion and insertion by electrophilic nitrogen transfer in continuous-flow mode. See the SI for substrate-specific reaction conditions. | ||
We subsequently selected to investigate the conceptually opposite strategy: N-deletion of pyrrolidines (3) to affect ring contraction towards cyclobutanes (4). We were pleased to find that a series of tetra-substituted pyrrolidines underwent the desired ring contraction efficiently in up to 82% yield. The yields of polysubstituted cyclobutanes 4a–4i were generally good to very good, and were either comparable to or, in most cases, superior to those obtained under batch conditions.18 Notably, the stereochemical integrity of the starting pyrrolidine was fully preserved in the final products. In general, pyrrolidines substituted with aromatic rings bearing electron-withdrawing groups (e.g., 4a–4c, 4e and 4f) showed superior performance to those bearing electron-donating substituents (e.g., 4h and 4i). Of particular note are chiral pyrrolidines (R,S)-5 and (S,S)-5, for which the cyclobutane products (R,S)-6 and (S,S)-6 were obtained in a highly enantioenriched form, a consequence of the direct radical recombination pathway. The modest yields observed for these products are mainly attributed to the lower degree of substitution in the starting pyrrolidines, a trend that was also reported by Antonchick for the corresponding batch conditions.18
To further highlight the versatility of the developed process, we extended the protocol to the addition of single nitrogen atoms across the C(sp2)–C(sp2) bonds of alkenes (7) to form nitriles (8) and aziridines (9) selectively – an inherently challenging task given a mutual intermediate that can be converted to either product depending on the reaction conditions. As such, nitriles 8a–8d, bearing halogen substituents at various positions of the aryl ring, were obtained in 50–75% yields. Nitriles 8e–8g obtained from polyfluorinated substrates were formed in moderate yields, with stronger electron-withdrawing groups leading to diminished efficiency (50%, 33%, and 16% yields for F, CF3, and C6F5, respectively). In contrast, nitriles derived from electron-rich aryl rings (8i–8l) were obtained in significantly higher yields (70–97%). A clear trend in reaction efficiency based on the electronic character of the substrate is thus notable. The observed trend is a consequence of the stability of the proposed key aziridine iodinium intermediate, which collapses to the aza-allenium ion through electrocyclic ring opening en route to nitrile formation.12 This transformation is more efficient and favoured for electron-rich substrates, and thus higher reaction yields are observed.
To complete our objective of accessing several core remodelling procedures with the same process, we last focused on the synthesis of NH-aziridines (9) from alkenes (7). As recently reported by us, the difficulty in this process is the successful trapping of an aziridine iodonium intermediate before electrocyclic ring opening and further oxidation to the nitrile. This divergent pathway was also accessible with minimal adaptation of the conditions of the continuous-flow process, demonstrating how careful optimization of residence time in flow processes can control reaction selectivity. Indeed, by reduction of the residence time from up to 100 seconds to 27 seconds, several alkenes were converted into the corresponding NH-aziridines 9. For example, styrenes containing bromo- or chloro-substituents afforded aziridines 9a–9d in yields of 36–67%. In contrast, substrates bearing fluorine atoms or a strongly electron-withdrawing CF3 group led to slightly diminished yields, likely due to the short residence times, given that this substrate showed reduced reactivity also under batch conditions.28
Under the optimized conditions, styrene furnished aziridine 9h in 33% yield, while more electron-rich styrenes provided aziridines 9i–9l in yields ranging from 10% to 53%. Notably, for these electron-rich substrates, the competing pathway leading to the corresponding nitrile was more pronounced. As reported, cinnamyl chloride proved to be a viable substrate for direct aziridination,28 delivering NH-aziridine 9m, albeit in a modest yield of 23%. The methodology was also applicable to an aliphatic alkene, affording aziridine 9n in 44% yield with complete retention of alkene stereochemistry. Gratifyingly, α-methyl-substituted styrenes performed particularly well, affording aziridines 9o and 9p in up to 86% yield. In the case of aziridine 9o, the reaction was successfully scaled up to 5 mmol, delivering the product in 83% yield.
In line with our objectives defined at the outset, we were able to successfully develop a unified continuous-flow process for four different core iodonitrene-mediated remodelling processes. The process was shown to be scalable, and in most cases showed similar or better performance compared to previously reported batch processes. With this streamlined process in hand, we last focused on testing the economic and environmental impacts of the processes, given the growing importance of green-by-design processes. To assess this goal, unprecedented techno-economic analysis and life cycle assessment were performed.
The TEA was conducted to rigorously evaluate the continuous-flow methodologies developed in this study for the synthesis of 2a, 4b, 8h, and 9p, in direct comparison with benchmark batch protocols reported in the literature.12,14,18,40 As shown in Fig. 2a (Table S10 in the SI), the transition to continuous-flow processing enabled a drastic reduction in energy consumption across all four synthetic routes. In particular, the implementation of the continuous-flow method resulted in an average energy consumption reduction of 92% relative to conventional batch techniques. Batch reactions exhibited significantly higher energy requirements, ranging from 4 kWh gproduct−1 to 15 kWh gproduct−1. In contrast, the total energy demand associated with the continuous-flow method was below 1 kWh gproduct−1. Among the four investigated reactions, aziridine synthesis exhibited the most pronounced energy savings when moving to flow conditions, with a 97% decrease, and energy consumptions passing from 15.2 kWh gproduct−1 to 0.5 kWh gproduct−1. These results are directly translated into significant cost savings in terms of electricity expenditure (Fig. 2b and Table S11 in the SI). Electricity expenses under batch conditions ranged between 400 € gproduct−1 year−1 and 1400 € gproduct−1 year−1, whereas the application of continuous-flow protocols reduced this value to ca. 50 € gproduct−1 year−1. To further contextualize the economic feasibility, raw material costs were also analyzed (Fig. 2c and Tables S12–S19 in the SI). On average, continuous-flow methods yielded a 60% reduction in raw material expenses relative to batch. In particular, the synthesis of 9p again stood out, with a 73% cost reduction, from 141.1 € gproduct−1 year−1 to 38.9 € gproduct−1 year−1. This decrease was largely attributed to eliminating two major cost-driving factors associated with the batch methodology, specifically the use of the Rh2(esp)2 catalyst and the significant use of dichloromethane (DCM) at the work-up stage, which together accounted for 82% of the total raw material cost (54.6 € gproduct−1 year−1 and 61.2 € gproduct−1 year−1, respectively).
In contrast, the continuous-flow protocol was designed to enhance material utilization and mitigate excessive solvent consumption. The continuous-flow technique entirely excluded the use of the Rh2(esp)2 catalyst, whereas the implementation of an Et2O-based workup solvent system, used in significantly lower volumes, contributed to a 68% reduction compared to DCM utilization, lowering the expense to 19.3 € gproduct−1 year−1. We identified similar cost-saving patterns across the remaining three continuous-flow protocols, with raw material cost reductions of 71%, 57%, and 38% for 8h, 2a, and 4b, respectively.
Building on these findings, we conducted a more comprehensive operational expenditure (OpEx) analysis, encompassing several cost categories, including not only raw materials, but also utility, maintenance, labour, administrative, and general operating expenses (Fig. 2d and Table S20 in the SI). The implementation of continuous-flow processing delivered an average 87% reduction in OpEx with respect to batch conditions. In quantitative terms, batch protocols exhibited operational expenditures ranging around 800–1800 € gproduct−1 year−1, whereas the continuous-flow method yielded costs of 100–150 € gproduct−1 year−1, representing an order-of-magnitude improvement in OpEx.
In this context, we initiated our comparative analysis with the impact on ocean acidification, which exhibited an average reduction of 86% following the implementation of the continuous-flow protocol compared to the batch method. From a component-specific perspective, the major contributors to ocean acidification under batch conditions were identified as DCM in the synthesis of 2a (80%), the chiral pyrrolidine derivative in the synthesis of 4b (32%), HFIP in the synthesis of 8h (43%), and the Rh2(esp)2 catalyst in the synthesis of 9p (69%). As biosphere integrity represents another key indicator of ecological stability within the nine planetary boundary framework, its assessment helps clarify the environmental safety of the reactions under study. We thus conducted a comparative assessment of the batch and continuous-flow protocols, evaluating their impact on genetic and functional biosphere integrities. Operating under continuous-flow conditions resulted in average reductions of 60% and 83% in impacts on genetic and functional biosphere integrities, respectively. A similar trend was observed for radiative forces, with the continuous-flow approach yielding an average impact reduction of 57%. We also examined impacts on land system change, addressing the effects on deforestation and the degradation of natural habitats. We observed that the implementation of continuous-flow conditions resulted in a comparatively modest 44% average reduction in land system change, relative to the batch method. This modest reduction was primarily attributed to the elevated impact observed only in the synthesis of 2a under continuous-flow conditions, which exhibited a 76% increase in land system change. Lastly, it was noted that the impact on freshwater change, regarding both blue and green waters, remained largely unaffected under continuous-flow conditions, with reductions limited to ca. 5%. The results were consistent with the literature findings, demonstrating the economic and environmental advantages of the continuous-flow methodology across diverse synthetic routes.36
Supplementary information is available. See DOI: https://doi.org/10.1039/d6gc01875k.
Footnote |
| † These authors contributed equally to this work. |
| This journal is © The Royal Society of Chemistry 2026 |