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CO on a Rh/Fe3O4 single-atom catalyst: high-resolution infrared spectroscopy and near-ambient-pressure scanning tunnelling microscopy

Nail El Hocine Baramaa, Chunlei Wanga, Panukorn Sombuta, David Ratha, Adam Lagina, Martin Ormošb, Lena Puntschera, Faith J. Lewisa, Zdeněk Jakubac, Florian Kraushofera, Moritz Edera, Matthias Meierd, Michael Schmida, Ulrike Diebolda, Cesare Franchinide, Peter Matvijab, Jiří Pavelec*a and Gareth S. Parkinsona
aInstitute of Applied Physics, TU Wien, 1040 Vienna, Austria. E-mail: jiri.pavelec@tuwien.ac.at
bDepartment of Surface and Plasma Science, Charles University in Prague, V Holesovickach 2, 180 00 Praha, Czech Republic
cCentral European Institute of Technology (CEITEC), Brno University of Technology, Brno, 612 00, Czechia
dFaculty of Physics and Center for Computational Materials Science, University of Vienna, Vienna, AT 1090, Austria
eDipartimento di Fisica e Astronomia, Università di Bologna, Bologna, IT 40126, Italy

Received 9th December 2025 , Accepted 30th January 2026

First published on 22nd May 2026


Abstract

Infrared reflection absorption spectroscopy (IRAS) offers a powerful route to bridging the materials and pressure gaps between surface science and powder catalysis. Using a newly developed IRAS setup optimised for dielectric single crystals, we investigate CO adsorption on the model single-atom catalyst Rh/Fe3O4(001). IRAS resolves three species: monocarbonyls at isolated, twofold-coordinated Rh adatoms, monocarbonyls at fivefold-coordinated Rh atoms embedded in the surface, and gem-dicarbonyls at isolated, twofold-coordinated Rh adatoms. Under ultra-high vacuum (UHV) conditions, RhCO monocarbonyl species at adatom sites dominate. Rh(CO)2 gem-dicarbonyl formation is kinetically hindered and occurs predominantly through CO-induced dissociation of Rh dimers rather than sequential adsorption of two CO molecules at an isolated, twofold Rh adatom. The sequential-adsorption pathway to Rh(CO)2 becomes accessible at millibar CO pressures as evidenced by near-ambient-pressure scanning tunnelling microscopy (NAP-STM). These findings link the UHV behaviour to that expected under realistic reaction conditions. Assignments of the vibrational frequencies to individual species rely on isotopic labelling, thermal treatments, and a review of previous SPM, XPS, and TPD data, supported by density functional theory (DFT)-based calculations. While theory provides qualitative insight, such as the instability of dicarbonyls on fivefold-coordinated Rh atoms, it does not yet reproduce experimental frequencies quantitatively and is sensitive to the computational parameters, highlighting the need for robust experimental benchmarks. The spectroscopic fingerprints established here provide a reliable foundation for identifying Rh coordination environments in oxide-supported single-atom catalysts.


1. Introduction

Infrared (IR) spectroscopy is one of the most powerful techniques in heterogeneous catalysis and is the most widely used among optical spectroscopies in this field,1 as it can be used to monitor the evolution of surface-bound intermediates under operando conditions.2–5 Furthermore, different implementations of this technique enable its application to diverse types of samples, ranging from powders, investigated by diffuse reflectance infrared Fourier transform spectroscopy (DRIFTS), to flat single crystals, studied by infrared reflection absorption spectroscopy (IRAS or IRRAS). As a result, IR studies on powder-supported catalysts have provided invaluable insight into reaction mechanisms. Moreover, CO titration is frequently used to study the properties of active sites because the CO-stretch frequency is sensitive to the local coordination environment.6–14

Oxide-supported Rh compounds are key materials in heterogeneous catalysis, for example, in automotive emission control and various selective hydrogenation and oxidation reactions.15–19 Accordingly, IR absorption studies of CO adsorption on Rh-supported powder catalysts have attracted attention for decades. The earliest report dates back to 1957, when Yang and Garland investigated the sintering of dispersed Rh and assigned the resulting CO vibrational doublet to a single Rh adsorption site.20 Since then, numerous studies have employed IR spectroscopy to investigate Rh-based powder catalysts, revealing both the complexity of CO adsorption and the diversity of the resulting surface species.18,21–28 However, the structural complexity and heterogeneity of such catalysts make it difficult to unambiguously link a given vibrational feature to a specific atomic site. The coexistence of multiple adsorption geometries and the dynamic restructuring of active sites under reaction conditions further complicate interpretation, as highlighted in a recent review on IR characterisation of isolated atoms and nanoparticles.29

The surface-science approach enables experiments on well-defined catalytic model systems under tightly controlled UHV conditions. This includes single-atom catalysts (SACs) supported on single-crystal oxides, which provide a powerful platform for disentangling these complexities. Such model systems allow a direct correlation between atomic structure, electronic configuration, and vibrational signatures, whose frequencies are also, in principle, straightforward to calculate using DFT. Nonetheless, applying IRAS to metal oxide single crystals, the predominant support materials in catalysis, is challenging. The optimal incidence angles required to enhance adsorbate signals often coincide with regions of low infrared reflectivity, thereby drastically reducing signal intensity.30 As a result, IRAS studies on metal oxides remain scarce. A common workaround is to grow thin oxide films on metal substrates to benefit from the high reflectivity of metals;31–34 however, this strategy limits the accessible facets and may introduce structural or electronic deviations from those of bulk single crystals or conventional oxide powders. Overcoming these challenges for metal oxide single crystals is particularly important, as IRAS offers the unique combination of surface sensitivity and compatibility with elevated pressures, making it well suited to bridge the pressure gap between model catalysts and practical materials.35,36

While UHV-based surface-science studies provide insights at the atomic scale, they often cannot access adsorption pathways that are kinetically hindered at low pressure. In particular, adsorption steps that require short-lived intermediate geometries may be strongly suppressed under UHV conditions even when thermodynamically favourable. To assess how the CO adsorption mechanism evolves with pressure, and to test whether additional pathways become accessible under catalytic conditions, it is essential to complement UHV spectroscopy on well-investigated model systems with techniques capable of operating at elevated gas pressures. Adatoms of catalytic metals on the Fe3O4(001) surface represent a versatile model system. Fe3O4(001) exhibits a well-investigated subsurface cation-vacancy (SCV) reconstruction,37 which exposes a periodic array of surface oxygen atoms that can stabilise isolated metal adatoms. This makes Fe3O4(001) an ideal platform for SAC studies, and a wide range of metals, including Rh, have been systematically explored on this surface.38–41 In the case of Rh, previous surface-science work has established how preparation conditions such as adsorption temperature, annealing, and coverage determine whether Rh occurs as isolated adatoms, substitutional species, or small clusters.39,42–45 The interaction of CO with these Rh species has also been extensively characterised using experiments and DFT calculations, providing a detailed picture of the resulting adsorption geometries.42,46,47 As a result, Rh/Fe3O4(001) is one of the best-characterised model systems for oxide-supported Rh catalysts, offering atomic-level structural control that is difficult to achieve on powders. Investigating this system by IRAS is thus of particular interest, as it offers a direct link between fundamental surface-science insights and the behaviour of applied, high-surface-area catalysts.

In this work, we present a high-resolution IRAS investigation of CO adsorption on the model Rh/Fe3O4(001) single-atom catalyst. By combining isotope-substitution experiments (12CO, 13CO, and mixed 12CO/13CO) with precise control over Rh coverage and surface preparation, we assign each observed vibrational feature unambiguously to a specific Rh coordination environment. DFT calculations capture the qualitative trends, but do not reproduce the vibrational frequencies quantitatively. Our IRAS study, therefore, provides a set of reference spectra for oxide-supported single-atom catalysts, offering a firm foundation for interpreting CO vibrational signatures in practical Rh catalysts and for evaluating theoretical predictions. To probe the pressure dependence of the CO adsorption mechanism, we further complemented the UHV-IRAS measurements with NAP-STM, which allowed us to determine whether the sequential-adsorption pathway to Rh(CO)2, kinetically inaccessible in UHV, becomes accessible under mbar CO exposures.

2. Methods

IRAS measurements were performed using a newly developed setup designed to optimise the signal-to-noise ratio for metal oxide surfaces.48 All spectra were acquired with a resolution of 4 cm−1 and averaged over 4000 scans, corresponding to an acquisition time of approximately 20 min per spectrum. The measurements were conducted with p-polarised light at non-grazing incidence angles between 55° and 74°, a range optimised for the Fe3O4(001) surface to enhance peak intensity. The spectrometer used in the IRAS setup is a Bruker VERTEX 80v. The entire system is based on a custom-built UHV chamber designed for chemical reactivity studies, operating at a base pressure below 1 × 10−10 mbar.49 The chamber is equipped with a triple-pocket electron-beam evaporator for metal deposition and a temperature-stabilised quartz-crystal microbalance (QCM) used to calibrate the Rh deposition rate. For Fe3O4(001), one monolayer (1 ML) is defined as one Rh atom per (√2 × √2)R45° unit cell, corresponding to 1.42 × 1014 atoms per cm2. Carbon monoxide was dosed using a home-built molecular beam source that provides uniform exposure over a well-defined ≈3.5 mm diameter area on the sample surface.49,50 The UHV chamber is equipped with several complementary surface-science techniques, including X-ray photoelectron spectroscopy (XPS), ultraviolet photoelectron spectroscopy (UPS), temperature-programmed desorption (TPD), low-energy electron diffraction (LEED), and low-energy ion scattering (LEIS). In the present work, XPS was employed to verify surface cleanliness and confirm Rh coverages. XPS spectra were recorded using a monochromatized Al/Ag twin-anode X-ray source (SPECS XR 50 M, FOCUS 500) and a hemispherical analyser (SPECS Phoibos 150) with Al Kα radiation.

UHV scanning tunnelling microscopy (STM) measurements were performed on a separate Fe3O4(001) sample in an independent UHV system consisting of a preparation chamber (p < 1 × 10−10 mbar) and an analysis chamber (p < 7 × 10−11 mbar). The STM (Omicron µ-STM) was operated at room temperature in constant-current mode using electrochemically etched tungsten tips. Further details of this setup are provided in previous papers.38,51,52

Non-contact atomic force microscopy (nc-AFM) measurements were carried out on an additional Fe3O4(001) sample in a dedicated UHV chamber (p < 1 × 10−10 mbar) using a qPlus sensor53 (f0 = 31.8 kHz, k = 1800 N m−1, Q ≈ 10[thin space (1/6-em)]000) with an electrochemically etched tungsten tip. The CO-tip functionalization was spontaneously formed during STM scanning or mild bias pulsing above Rh–CO species, similarly to previous reports.40

Near-ambient-pressure measurements were performed at the Nanomaterials Group at Charles University in Prague. The system consists of a UHV preparation chamber equipped with XPS, an electron-beam evaporator, an electron beam heating stage, and an oxygen supply, connected via a transfer line to a second chamber housing an Aarhus NAP-STM/AFM microscope. The base pressure was 1 × 10−9 mbar in the preparation chamber and 1 × 10−10 mbar in the STM/AFM chamber. CO (Linde, 99.997%) was introduced into the STM/AFM enclosure via a leak valve equipped with a cryogenic (LN2-cooled) filter. Near-ambient pressures in the range of 1–10 mbar were applied at room temperature and monitored using a calibrated Pirani gauge. STM images were acquired in constant-current mode under stable CO pressure, with typical tunnelling conditions of +0.7–1.2 V sample bias and 20–50 pA. After the NAP-STM measurements, the high-pressure cell was pumped back to UHV, and the sample was imaged again to confirm that no pressure- or tip-induced morphological changes had occurred.

All samples used in this study were natural Fe3O4(001) single crystals obtained from SurfaceNet GmbH. Surface preparation consisted of repeated cycles of Ne+ (or Ar+, depending on the chamber) ion sputtering at 300 K (1 keV, 15 min) followed by annealing under UHV at 900 K for 15 min. Every second annealing cycle was performed in an oxygen atmosphere (p(O2) = 3 × 10−7 mbar, 20 min) to prevent reducing the sample.

VASP was used for all DFT calculations with the PAW method and a 550 eV plane-wave cutoff.54–56 Electronic exchange–correlation was treated using the GGA-PBE functional with D3 dispersion corrections (Becke–Johnson damping), and strong correlation of Fe 3d states was described with Ueff = 3.61 eV.57–60 This choice of functional differs from the optB88-DF employed by Wang et al.,46 resulting in slightly different calculated adsorption energies. Electronic self-consistency and ionic-relaxation were converged to 10−6 eV and 0.02 eV Å−1, respectively. The Fe3O4(001) surface was modelled by an asymmetric 13-layer slab (7 octahedral and 6 tetrahedral Fe layers) in a (2√2 × 2√2)R45° supercell, with the top 4 layers relaxed, the bottom 9 fixed, Γ-point sampling only, and 14 Å of vacuum.46 CO vibrational frequencies were computed in the harmonic approximation using finite differences. Motivated by the use of DFT+U to mitigate self-interaction errors in localised d states, we also examined the effect of applying a Hubbard U to the Rh 4d states, using the same Ueff value as for the Fe 3d states, on the calculated CO stretching frequencies. The computed CO stretching vibrational frequency for adsorbed CO on the Rh/Fe3O4(001) was scaled by the factor λ = vexpCOgas/vcalCOgas to compensate for the systematic DFT errors, where vexpCOgas and vcalCOgas are the experimental61 and calculated frequencies of an isolated CO molecule in the gas phase, respectively.

3. Summary of results from our previous studies

The adsorption of Rh on Fe3O4(001) in the low-coverage regime has been comprehensively characterised in our previous studies.42,46,47 Additional work by Sharp et al. further refined this picture by mapping the distribution of Rh species over a wide range of coverages and annealing temperatures.39 In the present study, we focus on low Rh coverages (<0.5 ML) deposited at room temperature, where isolated Rh adatoms dominate. These adatoms are twofold-coordinated (Rh2fold) to surface oxygen atoms within the SCV reconstruction and appear in STM images as bright protrusions centred between the rows of octahedrally coordinated Fe atoms (Feoct).42 The adsorption energy of Rh2fold was calculated to be Eads = −4.42 eV.46 Occasionally, Rh2fold adatoms pair to form Rh2 dimers, which appear as elongated protrusions in STM. At room temperature, the dimers oscillate between two equivalent configurations by moving parallel to the Feoct rows.42,46 DFT calculations indicate that these dimers are thermodynamically preferred over two isolated adatoms by approximately 0.19 eV, but kinetic barriers prevent pairing of all Rh2fold adatoms at room temperature. Dimers account for approximately 12% of the total Rh population at an initial coverage of 0.2 ML. In addition to adatoms and dimers, some Rh atoms substitute surface/subsurface Feoct rows sites within the spinel structure to form fivefold (Rh5fold) or sixfold (Rh6fold) coordinated Rh sites.42 These substitutional Rh atoms are stabilised relative to the Rh2fold adatom by 0.67 eV for the fivefold configuration and by 1.10 eV for the sixfold subsurface configuration. Only the surface Rh5fold species are relevant to our CO adsorption studies here. While these substitutional Rh atoms are already present in small quantities after room-temperature deposition, annealing above ≈400 K drives a substantial fraction of Rh2fold adatoms into the more highly coordinated Rh5fold sites.

Fig. 1 summarises the three principal CO adsorption configurations on Rh sites observed after CO exposure on a low-coverage Rh/Fe3O4(001) surface.42,46 Fig. 1a presents an STM image (top) and a nc-AFM image (bottom) of the same surface region, both recorded at 78 K using a CO-terminated tip after CO exposure. The most abundant species are Rh2foldCO monocarbonyls (highlighted by cyan arrows).46 Although CO adsorption modifies the local coordination of the Rh adatom, we retain the Rh2fold notation throughout for simplicity, referring to the coordination of the Rh site prior to CO adsorption. Upon CO adsorption, the Rh2fold adatom sinks slightly into the surface and forms an additional bond with one of the two equivalent subsurface oxygen atoms, forming a pseudo-square-planar geometry tilted away from the surface normal. The weak bond to the subsurface oxygen enables rapid switching between two equivalent configurations along the [110] direction. The calculated switching barrier is approximately 0.1 eV.46 As a result, at room temperature as well as at 78 K, the species appear as faint double protrusions in nc-AFM and as elongated features in STM. The corresponding structural model and calculated adsorption energy are shown in Fig. 1b.


image file: d5fd00158g-f1.tif
Fig. 1 CO adsorption configurations on Rh/Fe3O4(001). (a) STM (top) and nc-AFM (bottom) images acquired at 78 K after CO exposure on low-coverage Rh/Fe3O4(001). Cyan arrows mark monocarbonyls on Rh2fold sites, and red arrows indicate a gem-dicarbonyl on Rh2fold sites. (b) DFT model of the pseudo-square-planar geometry adopted by the Rh2fold monocarbonyl. The CO is not vertical but tilted towards the viewer by ≈20°. (c) DFT model of the gem-dicarbonyl on a Rh2fold site.46 (d) STM image extracted from a movie recorded during CO exposure on 0.2 ML Rh/Fe3O4(001). Here, 1 monolayer (ML) corresponds to 1.42 × 1014 Rh atoms per cm2, i.e. one Rh atom per (√2 × √2)R45° surface unit cell of Fe3O4(001). Yellow arrows mark CO adsorbed on Rh5fold atoms substituting Feoct sites. (e) DFT model of CO adsorbed on a Rh5fold site. Adsorption energies are based on PBE-D3 with URh = 0.

In addition, the bright double-lobed protrusions oriented perpendicular to the Feoct rows (red arrows in Fig. 1a) are assigned to Rh2fold(CO)2 gem-dicarbonyl species. As demonstrated by Wang et al.,46 these dicarbonyls form almost exclusively through CO-induced dissociation of the minority Rh2 dimers present on the surface under UHV conditions. This process was captured in sequential STM images, and DFT calculations revealed that, upon CO exposure, the Rh2 dimers pass through an unstable intermediate Rh2(CO)3 configuration, which subsequently dissociates to produce one monocarbonyl Rh2foldCO and one gem-dicarbonyl Rh2fold(CO)2. Although the Rh2fold(CO)2 configuration is thermodynamically stable (average adsorption energy Eads = −2.37 eV per CO with the PBE-D3 functional used in the current work; no U on Rh), sequential adsorption of two CO molecules on an isolated Rh2fold adatom was never observed in UHV. Our previous combined STM/DFT analysis suggested that this pathway requires the Rh2foldCO to adopt a transient, sterically constrained geometry with an extremely low configurational probability. Since the Rh2foldCO assumes this configuration only during a tiny fraction of the time (<10−8), adsorption of another CO during these short periods is extremely unlikely at UHV gas impingement rates.46 This kinetic picture predicts that sufficiently high CO pressures should enable the sequential-adsorption mechanism by dramatically increasing the rate at which CO molecules encounter Rh2foldCO species in the required transient geometry. As shown in section 5, NAP-STM measurements presented in the current work indeed reveal that the sequential CO adsorption pathway becomes accessible under mbar CO pressures, providing direct experimental support for this kinetic interpretation. The structural model of Rh2fold(CO)2 and the calculated adsorption energy per CO molecule are shown in Fig. 1c.

CO can also adsorb on the substitutional Rh5fold sites. In this case, DFT calculations indicate that gem-dicarbonyl formation is energetically unfavourable.46 Only a single CO molecule can bind to a Rh5fold atom, completing an octahedral coordination environment (Fig. 1e). CO adsorption at these sites is significantly weaker (Eads = −2.19 eV with PBE-D3, URh = 0) than at the Rh2fold sites (Eads = −2.52 eV).46 These calculations are in excellent agreement with CO TPD experiments, where monocarbonyls on Rh5fold lead to a desorption peak at around 410 K, notably lower than the desorption peak stemming from the Rh2fold at 530 K.42 The STM image in Fig. 1d is extracted from a movie recorded before and during CO exposure (included as Movie S1). The movie illustrates how Rh2fold sites transform into elongated features upon CO adsorption (highlighted again by cyan arrows).46 In contrast, the Rh5fold sites exhibit only a subtle change in contrast upon CO adsorption, and the CO does not appear elongated (no flipping between two configurations; yellow arrows in Fig. 1d). Owing to their low concentration under the present deposition conditions (temperature and coverage), these species are observed only rarely in STM. Nevertheless, they are expected to give distinct signatures in the infrared spectra, as IRAS is very sensitive to dipole moments normal to the surface. In principle, low-temperature infrared spectroscopy could also be used to probe dimer carbonyl intermediates, provided the dimers are stabilized under the chosen conditions. In the present work, we focus on the three adsorption configurations observed at room temperature. Together, these three configurations—monocarbonyls on Rh2fold, gem-dicarbonyls on Rh2fold, and monocarbonyls on Rh5fold—constitute the structural basis for interpreting the IRAS spectra discussed in Section 4. Their distinct adsorption geometries and adsorption energies are expected to produce characteristic shifts in the CO stretching frequencies that allow each configuration to be distinguished spectroscopically, and they represent the three relevant Rh–CO states from which the kinetic behaviour under different CO pressures emerges. Section 5 provides a direct NAP-STM test of this kinetic picture.

4. IRAS of CO on Rh/Fe3O4(001)

4.1. Three different CO species

To enable a direct comparison with the STM and DFT results summarised in Fig. 1, IRAS measurements were performed on a Rh-decorated Fe3O4(001) sample with Rh coverages that had been previously characterised in detail.42,46 Fig. 2 shows p-polarised IRAS spectra acquired after exposure to 3.4 langmuirs (L; 1 L = 1.33 × 10−6 mbar s) of 13CO at room temperature for two different Rh coverages, 0.2 ML (black spectrum) and 0.4 ML (blue spectrum). In all experiments, the reference spectrum R0 was recorded after Rh deposition but prior to CO dosing at 300 K, ensuring that only CO-induced changes appear in the spectra. For 0.2 ML Rh, three distinct absorption bands are observed in the CO-stretching region at 1979, 2037, and 2059 cm−1. All three features are also present at 0.4 ML Rh and increase in intensity with increasing Rh coverage, indicating that each originates from CO adsorbed on Rh-related sites. The positions of the three bands remain nearly unchanged in the 0.4 ML spectrum, which suggests that dipole–dipole interactions between neighbouring CO molecules are negligible. This is consistent with the previous STM studies,42,46 which show that the nearest-neighbour distance between Rh2fold adatoms on Fe3O4(001) is fixed by the surface reconstruction at 8.4 Å.
image file: d5fd00158g-f2.tif
Fig. 2 High-resolution IRAS spectra of 13CO adsorbed on Rh/Fe3O4(001). p-polarised IRAS spectra of Rh-decorated Fe3O4(001) with Rh coverages of 0.2 ML (black) and 0.4 ML (blue) after 3.4 L 13CO exposure. 13CO was introduced to the surface at room temperature, and the IRAS spectra were collected under identical conditions at T = 300 K. Three distinct vibrational bands are observed at 1979, 2037, and 2059 cm−1; their intensities increase with Rh coverage. These features are assigned to CO adsorbed on twofold-coordinated Rh2fold sites, the symmetric stretch of gem-dicarbonyl Rh2fold(CO)2 species, and CO adsorbed on Rh5fold sites, respectively. Spectra were acquired with 4 cm−1 resolution and averaged over 4000 scans (≈20 min acquisition time per spectrum).

Based on the CO stretch frequencies calculated by DFT (Table 1), we assign the low-frequency peak at 1979 cm−1 to CO adsorbed on the Rh2fold sites (Fig. 1b). The relatively high intensity of this band is consistent with STM results, which show that Rh2foldCO species are by far the most abundant configuration containing CO under these conditions.46 We note, however, that IRAS peak intensities are not solely determined by the population of a given species, but also depend on the magnitude and orientation of the dynamic dipole moment relative to the surface normal, and on the detailed bonding geometry.

Table 1 Experimental and calculated C–O stretching frequencies, together with calculated CO adsorption energies for the different adsorption configurations. The calculated values are obtained by DFT with and without Hubbard U correction applied to the Rh 4d states
Configuration Eads, CO (eV) [small nu, Greek, tilde]DFT,13CO (cm−1) [small nu, Greek, tilde]exp,13CO (cm−1) [small nu, Greek, tilde]DFT,12CO (cm−1) [small nu, Greek, tilde]exp,12CO (cm−1)
Ueff, Rh= 0
Rh2foldCO −2.52 1971 1979 2021 2026
Rh2fold(CO)2 −2.37 2022 (sym) 2037 2076 (sym) 2085
1961 (asym) 2012 (asym)
Rh5foldCO −2.19 2025 2059 2078 2106
[thin space (1/6-em)]
Ueff, Rh= 3.61 eV
Rh2foldCO −1.93 1978 1979 2029 2026
Rh2fold(CO)2 −2.03 2023 (sym) 2037 2076 (sym) 2085
1974 (asym) 2025 (asym)
Rh5foldCO −1.77 2047 2059 2100 2106


The two higher-frequency bands at 2037 cm−1 and 2059 cm−1 appear with much lower intensity than the dominant 1979 cm−1 band in both spectra. As mentioned previously, only small populations of Rh2 dimers (the precursors of gem-dicarbonyls) and Rh5fold sites are present at this coverage. This low abundance is reflected in the correspondingly weak intensity of these two features. Based on DFT, the assignment of these two peaks is uncertain since the calculation without U on the Rh 4d states yields almost identical frequencies for the symmetric mode of the gem-dicarbonyl and the CO at the Rh5fold embedded in the surface. In the following, we will demonstrate that the assignment of the experimental IR bands in Fig. 2 and Table 1 is correct, although the agreement between DFT and experiment is worse than for the Rh2foldCO.

In principle, one could also consider whether one of the two high-frequency IRAS peaks originates from CO adsorbed on small Rh clusters. However, at a coverage <0.5 ML Rh, the amount of Rh clusters is negligible.39 Moreover, because clusters exhibit a wide distribution of sizes and geometries, their vibrational signatures are typically broad rather than sharp, unlike the well-defined peaks observed in Fig. 2. Finally, CO adsorbed on small Rh clusters normally exhibits lower stretching frequencies (≈2040 cm−1 for 12CO).62

Table 1 shows that the CO stretch frequencies are directly correlated to the adsorption energies. A strong Rh–CO interaction is associated with back-donation from Rh 4d into the CO 2π* orbital, weakening the C–O bond and shifting its stretching frequency to lower values.63–66

4.2. Annealed Rh/Fe3O4(001): increase of Rh5fold sites

As shown in previous STM and XPS studies,39,42 Rh2fold adatoms are stable only below ≈400 K. Upon heating above this temperature, these species begin to incorporate into the surface lattice, forming fivefold and sixfold Rh sites. This structural transformation should be detectable by IRAS, as CO molecules adsorbed on twofold and fivefold Rh sites exhibit distinct C–O stretching frequencies, whereas Rh6fold is below the surface and therefore not capable of CO adsorption. Fig. 3 presents p-polarised IRAS spectra of Rh/Fe3O4(001) surfaces that all had the same initial Rh coverage of 0.2 ML but underwent different thermal treatments prior to 3.4 L 13CO dosing, leading to a different distribution of Rh species. The black spectrum corresponds to the as-deposited sample, which was kept at room temperature, and is identical to the one shown in Fig. 2.
image file: d5fd00158g-f3.tif
Fig. 3 Thermally induced conversion of twofold to fivefold Rh sites monitored by IRAS: p-polarised IRAS spectra of Rh-decorated Fe3O4(001) surfaces (initial Rh coverage 0.2 ML) subjected to different thermal treatments prior to 3.4 L 13CO exposure. The black spectrum corresponds to the as-deposited sample kept at 300 K (same as Fig. 2). The orange spectrum was obtained after a brief flash to 420 K followed by cooling to 300 K, while the red spectrum was recorded after annealing the surface for 5 min at 420 K. All spectra were measured at 300 K after CO exposure.

For the orange spectrum, the sample was briefly flashed to ≈420 K after Rh deposition and then cooled back to 300 K. The spectrum shows a pronounced increase in the intensity of the high-frequency band at 2059 cm−1, consistent with its assignment to monocarbonyls on Rh5fold sites that form upon thermal conversion of Rh2fold species. The accompanying decrease in the low-frequency peak further supports this interpretation. The shoulder of the peak at 1979 cm−1 is attributed to CO adsorbed on Rh2fold adatoms located at defect sites, primarily antiphase domain boundaries (APDBs) and sites above additional subsurface Feoct cations, as described in our previous studies.67,68 Such defect sites can also stabilise Rh adatoms in a twofold-coordination with a slightly higher adsorption energy, resulting in a weaker Rh–CO interaction and consequently a blue shift of the C–O stretching frequency. The shoulder appears more distinct in the orange spectrum mainly because the 1979 cm−1 peak undergoes a slight red shift after flashing to ≈420 K. A similar small shift is observed for the intermediate band at 2037 cm−1. These small shifts likely reflect subtle changes in the Rh–CO interaction strength due to modest modifications in the electronic structure of the surface and subsurface layers. Such changes can accompany structural rearrangements in which some Rh2fold adatoms convert into fivefold surface species, while others incorporate into subsurface positions to form Rh6fold, as seen previously for Rh and other transition metal adatoms.38,42 The nearly unchanged intensity of the shoulder compared to the black spectrum indicates that regular twofold Rh2fold species are the first to convert into Rh5fold, while those associated with defects remain stable after this brief heat treatment.

The red spectrum in Fig. 3 was recorded at 300 K after annealing the surface for 5 minutes at 420 K. This longer temperature treatment further decreases the intensity of both the low-frequency Rh2foldCO band and its shoulder, while the high-frequency band assigned to CO on Rh5fold becomes more intense. This provides direct experimental support for the peak assignments, as it is consistent with earlier STM and XPS observations of the evolution of Rh species under comparable annealing conditions.39,42 In contrast to the behaviour of the twofold band, the fivefold band shows a slight blue shift after annealing, likely reflecting a modest reduction in π-backdonation from Rh5fold to CO as they become more tightly integrated into the surface lattice. The resulting weaker Rh–CO bond leads to a slightly higher C–O stretching frequency, in agreement with the observed shift.

Although the shift in intensity from the low- to the high-frequency band provides clear qualitative evidence for their assignment to CO on twofold and fivefold Rh sites, respectively, it remains difficult to determine quantitatively how many Rh2fold atoms convert into Rh5fold upon annealing. This is because CO binds in different geometries on the two sites, leading to different orientations of the vibrational dipole moment relative to the surface, and, possibly, different magnitudes of the dipole moment. CO adsorbed on Rh5fold stands upright, so its dipole moment change is normal to the surface and couples strongly to the perpendicular component of p-polarised light. In contrast, CO bound to Rh2fold adopts a pseudo-square-planar geometry and is tilted, resulting in both perpendicular and in-plane components of the dipole moment. Our measurements were conducted with p-polarised light at non-grazing incidence angles below 74°. At these incidence angles, perpendicular dipoles produce strong negative features, whereas in-plane dipoles give much weaker positive signals (approximately one-fifteenth of the perpendicular intensity if the dipole is parallel to the incidence plane, and no signal in p polarisation for the case of a dipole moment normal to the incidence plane; see Fig. S1). Consequently, the intensities of the two peaks are not a quantitative measure of the abundance of these species.

4.3. Isotopic confirmation of the gem-dicarbonyl band

To provide direct experimental confirmation of the assignment of the mid-frequency peak to gem-dicarbonyl Rh2fold(CO)2 species, isotopic substitution experiments were performed using 12CO, 13CO, and an equimolar 12CO/13CO mixture on identically prepared 0.4 ML Rh/Fe3O4(001) surfaces. Fig. 4 presents the corresponding p-polarised IRAS spectra. The top (blue) spectrum corresponds to 13CO, identical to that shown in Fig. 2; the bottom (purple) to 12CO; and the middle (dark violet) to the 12CO/13CO mixture.
image file: d5fd00158g-f4.tif
Fig. 4 Isotopic confirmation of the gem-dicarbonyl assignment. p-polarized IRAS spectra recorded at 300 K after exposing 0.4 ML Rh/Fe3O4(001) to 13CO (blue), 12CO (purple), and an equimolar 12CO/13CO mixture (dark violet). Each pure-isotope spectrum exhibits three bands corresponding to CO adsorbed on twofold and fivefold Rh sites, as well as the symmetric stretch of the Rh2fold(CO)2 gem-dicarbonyl. In the 12CO spectrum, all 13CO features are shifted to lower frequency by ≈47 cm−1, consistent with the expected isotopic dependence of the C–O stretching mode. In the mixed-isotope experiment, an additional intermediate band appears between the pure-12CO and pure-13CO gem-dicarbonyl peaks, arising from vibrational coupling within mixed-isotope Rh2fold(13CO)(12CO) species at 2068 cm−1, see sketch. The presence of this intermediate feature provides unambiguous evidence that the mid-frequency band at ≈2037 cm−1 (for 13CO) originates from a gem-dicarbonyl species rather than a monocarbonyl. The relative intensities of the three gem-dicarbonyl peaks in the mixed-isotope spectrum are consistent with the expected 1[thin space (1/6-em)]:[thin space (1/6-em)]2[thin space (1/6-em)]:[thin space (1/6-em)]1 statistical distribution for an equimolar 12CO/13CO mixture.

As expected, the pure 12CO and 13CO spectra each display three absorption bands of comparable relative intensity, with all 13CO features shifted to lower frequencies by ≈47 cm−1 relative to the other isotope. This isotopic shift is consistent with the change in the reduced mass of the C–O system and is in excellent agreement with the harmonic-oscillator model. For monocarbonyl species adsorbed on Rh atoms, exposure to an equimolar mixture of 12CO and 13CO should yield two peaks of similar intensity separated by ≈47 cm−1, corresponding to identical Rh sites bonded to either isotope. This behaviour is indeed observed in the mixed-isotope (dark violet) spectrum for the two peaks at 1979 and 2059 cm−1 with 13CO (2106 and 2026 cm−1 with 12CO), confirming their assignment as monocarbonyl Rh–CO species. In contrast, gem-dicarbonyls behave differently: co-adsorption of 12CO and 13CO should produce a third, intermediate band between the pure-isotope peaks, arising from mixed-isotope Rh2fold(12CO)(13CO) species. The appearance of such an intermediate band is a well-established fingerprint of intramolecular vibrational coupling between the two CO ligands, as reported previously by Frank et al.26

In the present case, the mixed-isotope spectrum reveals a new feature at 2068 cm−1, providing solid evidence that the mid-frequency band in the pure-isotope spectra originates from Rh2fold(CO)2 rather than from distinct monocarbonyl species. The measured peak separations between the symmetric 12CO and mixed-isotope bands (≈17 cm−1), and between the mixed-isotope and 13CO bands (≈31 cm−1), are fully consistent with the previously reported coupling strengths for gem-dicarbonyls on Rh atoms supported on NiAl(110).26 Furthermore, the approximately two-fold higher intensity of the mixed-isotope 2068 cm−1 band relative to the pure 13CO dicarbonyl feature is fully consistent with statistical expectations: in an equimolar 12CO/13CO mixture, the probability of forming Rh2fold(13CO)(12CO) is twice that of forming Rh2fold(13CO)2 or Rh2fold(12CO)2.

Gem-dicarbonyls exhibit two characteristic C–O stretching modes, a symmetric and an asymmetric stretch,18,22,27,69,70 but we have only discussed the symmetric stretch so far. In powder catalysts, both bands appear as minima in relative reflectivity (i.e., upward absorbance peaks) because the crystallites are randomly oriented with respect to the incident IR light. On a single-crystal surface, the sign and magnitude of ΔR/R0 depend on dipole orientation, light polarisation, and incidence angle, as described by the Fresnel equations (Fig. S1). Perpendicular dipole components give strong negative bands, whereas in-plane dipoles generate much weaker positive features. The symmetric stretch of the Rh2fold(CO)2 gem-dicarbonyl has a net dipole-moment change normal to the surface and therefore appears as the negative peak (2037 cm−1 for 13CO). In contrast, the asymmetric stretch exhibits an in-plane dipole moment change and would appear as a very weak, positive band. In a recent IRAS study of Rh gem-dicarbonyls on TiO2(110), Eder et al.62 observed the asymmetric stretch as a weak positive peak ≈61 cm−1 below the symmetric stretch peak, in excellent agreement with DFT predictions. Thus, in our spectra, the asymmetric stretch would be extremely weak compared with the symmetric stretch at 2037 cm−1 and would fall below the noise level. Moreover, its expected frequency coincides almost exactly with the intense Rh2foldCO monocarbonyl band at 1979 cm−1, which lies 58 cm−1 below the symmetric stretch—very close to the offset reported by Eder et al.62 and to values known from powder catalysts.22,69,70

The 0.4 ML spectrum in Fig. 2 shows that the relative intensities of both the high-frequency band at 2059 cm−1 and the intermediate band at 2037 cm−1 increase more strongly with Rh coverage than that of the dominant Rh2foldCO band (see Table S1). This behaviour is fully consistent with our peak assignment. For the Rh5fold embedded in the surface, it has been shown that its occurrence markedly increases with an increase of the Rh coverage to 0.5 ML.39 Likewise, Rh2 dimers become more abundant at higher Rh coverages. Initially, deposited Rh atoms diffuse until they are trapped at isolated twofold sites. With increasing coverage, a larger fraction of these sites is already occupied, increasing the probability that an incoming Rh atom encounters and binds to an existing Rh2fold adatom. The resulting dimers are thermodynamically stable, being ≈0.19 eV more stable than isolated Rh2fold adatoms,46 which leads to a higher concentration of Rh2fold(CO)2 gem-dicarbonyls upon CO exposure under UHV conditions, where gem-dicarbonyls are created by dimer decay.46 To determine whether gem-dicarbonyls also remain a minority species at elevated pressures, we carried out complementary near-ambient-pressure STM measurements, which are presented in the next section.

5. Near-ambient-pressure STM: sequential CO adsorption at elevated pressure

As described in Section 3, in UHV experiments, dicarbonyls form via dissociation of Rh2 dimers.46 To test whether this restriction persists at higher pressures, we examined CO adsorption on Rh/Fe3O4(001) using NAP-STM. After standard UHV preparation and a brief low-dose CO exposure (≈3 L), STM imaging confirmed that the surface contained primarily monocarbonyl Rh2foldCO species, as in all previous UHV studies. When a much higher CO dose was applied, 2 mbar for 3 min at room temperature, the surface changed dramatically. STM images recorded at 2 mbar CO [Fig. 5a] showed that essentially all Rh2foldCO species adopt a double-lobed geometry identical to the Rh2fold(CO)2 gem-dicarbonyls observed in UHV only after CO-induced dissociation of Rh2 dimers [red arrows in Fig. 5a]. Under these near-ambient conditions, however, the gem-dicarbonyls appear in the absence of any monocarbonyl neighbours (which would result from the Rh-dimer mediated mechanism of dicarbonyl formation), demonstrating that the dicarbonyls now form directly from isolated Rh2foldCO monocarbonyls. These gem-dicarbonyls were also observed after dosing was stopped and the chamber pumped to UHV conditions, in agreement with the stability of dicarbonyl species inferred from the adsorption energy (Fig. S2). A blank experiment on clean Fe3O4(001) showed no adsorption, confirming that the species observed originate from Rh.
image file: d5fd00158g-f5.tif
Fig. 5 Exposure of Rh/Fe3O4(001) to 2 mbar CO. (a) NAP-STM image (Vsample = 2.2 V; I = 0.02 nA) of 0.2 ML Rh/Fe3O4(001) under 2 mbar CO. Two-lobe features are observed as the dominant species and are assigned to gem-dicarbonyls formed by adsorption of a second CO molecule on Rh2foldCO species (red arrows in Fig. 1a). (b) Adsorption of a second CO molecule onto the monocarbonyl configuration proceeds via a metastable transition state (TS), occupied ≈10−8 or 10−9 of the time at room temperature, as deduced from DFT calculations in our previous study.46 Energies are given relative to the monocarbonyl ground state.

Based on TPD results,71 we estimate that the residence time of a CO molecule on the Fe3O4(001) surface at RT is in the nanosecond regime. This implies that CO can diffuse in a weakly bound precursor state before being captured at a Rh site. This is consistent with the rapid saturation of the monocarbonyl peak observed in CO exposure-dependent IRAS spectra (66% saturation is achieved already at 0.063 L exposure, Fig. S3). By fitting the uptake curve, we determined the effective capture area per Rh2fold site to be approximately 4 nm2, which means that a large fraction of the CO arriving at the surface is efficiently captured at Rh sites in the initial regime. This is consistent with our STM observations, allowing for a moderate tip-shadowing effect (Fig. 1 and Movie S1). Since sequential CO adsorption to form Rh2fold(CO)2 species was not observed experimentally by STM under UHV conditions, even though CO encounters pre-existing Rh2foldCO roughly every 10 seconds at 10−8 mbar, we conclude that the capture of the second CO molecule on an isolated monocarbonyl is a rare event. This suggests that the second CO is not generally stabilised upon encounter with Rh2foldCO unless the local Rh-support geometry is transiently in a capture-ready configuration. Assuming the same 4 nm2 capture zone, each Rh2foldCO experiences roughly 2 × 107 CO encounters per second at 2 mbar. Thus, the immediate observation of Rh2fold(CO)2 at 2 mbar CO in NAP-STM suggests that the increase in the encounter rate renders the requisite rare events accessible on the experimental timescale, leading to the formation of thermodynamically stable Rh2fold(CO)2 species.

6. Discussion

The results presented here demonstrate that IRAS experiments on single crystals under well-defined conditions can provide quantitatively reliable, site-resolved vibrational fingerprints for oxide-supported single-atom catalysts. Using Rh/Fe3O4(001) as an exemplary model system, we resolve three distinct Rh–CO species, namely monocarbonyls and gem-dicarbonyls of twofold-coordinated Rh adatoms, as well as monocarbonyls formed at fivefold-coordinated Rh atoms embedded in the surface. We could assign the vibrational frequencies νCO unambiguously to these species by combining isotope substitution, annealing experiments, STM/nc-AFM imaging, XPS, TPD, and DFT-based calculations. The coordination-dependent shifts in νCO provide a direct handle on the local environment of Rh and can be used as a reference when analysing the more complex CO-IR spectra of supported Rh powder catalysts.18,24,25,28,69,70

The present study also exemplifies how single-crystal IRAS relates to CO-IR spectra on powders. On powder catalysts, randomly oriented crystallites and averaging over all incidence angles mean that both symmetric and asymmetric gem-dicarbonyl stretches typically appear as bands of increased absorption.18,24,25,28,69,70 On the single-crystal Rh/Fe3O4(001) model system, by contrast, the fixed surface orientation and chosen incidence angle range make the IRAS intensity strongly dependent on dipole direction: components normal to the surface dominate, while in-plane components contribute only weak, oppositely signed features. This explains why we only observe the symmetric stretch of the gem-dicarbonyl and do not observe the asymmetric mode, even though both are prominent in powder spectra. While the spectra therefore differ in the intensities of the IR bands, the fingerprint positions of the IR-active species remain unaffected, making UHV-based IRAS studies valuable for identifying, assigning and benchmarking surface species.

The comparison with theory highlights both the strengths and limitations of current DFT approaches. DFT+U calculations correctly predict the relative ordering of νCO for the Rh2foldCO and Rh2fold(CO)2 species at twofold-coordinated Rh adatom sites, and the calculated adsorption energies rule out gem-dicarbonyl formation at Rh5fold sites. On the other hand, the calculated difference between the symmetric stretch of Rh2fold(CO)2 and the CO stretch frequency at Rh5fold strongly depends on details of the computational approach (whether a Hubbard U is used for the Rh), so assigning these bands purely on the basis of the calculated frequencies would be ambiguous. Since the CO frequency depends on the charge of the Rh,66 we attribute this sensitivity to the different charge states of Rh at these sites: At twofold sites, Rh2fold is singly charged,46 while the calculated Bader charge of the Rh5fold is 1.27e (1.23e with Ueff,Rh = 3.61 eV), indicating a Rh2+ or Rh3+ state. Usually, the Rh3+ oxidation state is more common, but less likely to form stable carbonyls than Rh2+.66 In our calculations, the Hubbard U mainly shifts the νCO on the Rh5fold, while the other configurations are much less affected. Employing U is common for similar systems with 3d transition elements,47 but it is often neglected for the 4d and 5d metals since several works indicate that U values for 4d elements are lower and therefore of less importance.72,73 Other work, however, indicates similar U values for Fe and Rh.74 Given that, in the present system, using Ueff,Rh = 3.61 eV significantly improves the agreement between calculated and experimental νCO at Rh5fold, it may be worthwhile to re-examine the role of Hubbard corrections for 4d (and possibly 5d) elements more generally, even though a single case study is clearly insufficient to justify a universal prescription. It should be noted, however, that the CO adsorption energies calculated with Ueff,Rh = 3.61 eV (Table 1) are inconsistent with our TPD results.42,47

Since the configuration corresponding to each frequency can be unambiguously determined by our experiments, the experimental spectra provide a valuable benchmark for refining computational treatment of metal–CO bonding on oxides. More broadly, the combination of well-defined model surfaces, high-quality IRAS, and complementary microscopy across the UHV–near-ambient range offers a general strategy for understanding the CO-IR signatures of isolated metal sites in real catalysts. This allows identification of which structural motifs and formation pathways are actually relevant under working conditions.

A central mechanistic question concerns the formation of gem-dicarbonyls. Under UHV, gem-dicarbonyl Rh2fold(CO)2 species arise almost exclusively from CO-induced dissociation of Rh2 dimers, even though the formation of a dicarbonyl from an isolated monocarbonyl is thermodynamically favourable. This behaviour reflects a strong kinetic constraint: sequential adsorption of a second CO molecule onto a Rh2foldCO appears to require that CO arrives when the Rh–CO complex is transiently in a capture-ready configuration, a circumstance that is rarely realised at the low encounter rates present during UHV dosing. In our previous work,46 we identified one plausible example of such a capture-ready configuration in the form of a metastable geometry approximately 0.5 eV above the Rh2foldCO ground state [Fig. 5b]. An energy difference of 0.5 eV corresponds to a configurational probability on the order of 10−8–10−9 at 300 K, which is consistent with the absence of sequential Rh2fold(CO)2 formation from isolated Rh2foldCO under UHV conditions, while at millibar CO pressures the dramatically increased encounter rate renders such rare configurations accessible on experimentally relevant timescales. As shown by the NAP-STM experiments in Section 5, this restriction is lifted at 2 mbar CO, where gem-dicarbonyls form directly on isolated Rh2fold sites and dominate the surface coverage. While the present data do not uniquely identify the capture-ready configuration and additional pathways may also contribute, the combination of UHV and NAP provides a coherent picture in which UHV acts as a kinetic filter that isolates individual reaction channels, whereas near-ambient measurements reveal which pathways dominate under conditions closer to applied catalysis.

7. Conclusions

The results demonstrate how IRAS can serve as a bridging technique between idealised model systems and applied systems under realistic conditions. Using Rh/Fe3O4(001) as a model system in UHV, we resolved and assigned the key Rh carbonyl species present on the surface: monocarbonyls and gem-dicarbonyls at twofold-coordinated Rh sites, as well as monocarbonyls formed by fivefold-coordinated Rh embedded in the surface. Under UHV conditions, gem-dicarbonyls are a minority species since they form almost exclusively via CO-induced dissociation of Rh2 dimers, because the sequential adsorption of two CO molecules on an isolated Rh2fold is kinetically blocked despite being thermodynamically favoured. Near-ambient-pressure STM shows that at millibar CO pressures this kinetic limitation is lifted and gem-dicarbonyls form directly on isolated Rh2fold sites, reconciling UHV model studies with the gem-dicarbonyl signatures commonly observed under catalytic conditions. The experimental CO stretch frequencies are valuable as fingerprints for oxide-supported single-atom catalysts. Comparison with DFT+U highlights that theory does not yet match experimental frequencies quantitatively, underlining the value of the IRAS benchmarks established here for interpreting CO-IR spectra and refining theoretical descriptions of metal–CO bonding on oxide-supported single-atom catalysts.

Author contributions

NEHB contributed to the investigation, performed formal analysis, data curation, visualisation, and prepared the original draft. CW assisted with data analysis and investigation. PS carried out the theoretical and methodological work, contributed to formal analysis and visualisation. DR supported methodology and contributed to experimental investigation. AL, FL, MO, and LP performed experimental investigation. ZJ contributed to investigation and formal analysis. FK performed data analysis and visualisation. ME contributed to methodology. MS, UD, MM, and CF contributed to the methodology and validation. PM contributed to investigation and methodology. JP contributed to conceptualisation, supervision, validation, and funding acquisition. GSP contributed to conceptualisation, supervision, validation, funding acquisition, and writing of the original draft. All authors participated in reviewing & editing of the manuscript.

Conflicts of interest

There are no conflicts to declare.

Data availability

The data supporting this article have been included as part of the supplementary information (SI). Supplementary information is available. See DOI: https://doi.org/10.1039/d5fd00158g.

Acknowledgements

Funding from the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation programme (grant agreement no. [864628], Consolidator Research Grant ‘E-SAC’) is acknowledged. This research was funded in part by the Austrian Science Fund (FWF) 10.55776/F8100 and the Cluster of Excellence MECS (10.55776/COE5). Jiri Pavelec and Adam Lagin gratefully acknowledge financial support from the FWF through project number 10.55776/I6732. Chunlei Wang gratefully acknowledges financial support from the FWF through project number 10.55776/PAT1934924. Matthias Meier gratefully acknowledges financial support from the FWF through project number 10.55776/PAT2176923. Moritz Eder acknowledges funding by the Marie Skłodowska-Curie Actions (Project 101103731, SCI-PHI). The authors acknowledge the CERIC-ERIC consortium (proposal ID 20252185) for access to experimental facilities and financial support. Peter Matvija acknowledges the financial support from the Ministry of Education, Youth, and Sports of the Czech Republic under project LM2023072. The Austrian Scientific Computing was used to obtain the computational results. For open access purposes, the authors have applied a CC BY public copyright license to any author-accepted manuscript version arising from this submission.

Notes and references

  1. F. Zaera, In-situ and operando spectroscopies for the characterization of catalysts and of mechanisms of catalytic reactions, J. Catal., 2021, 404, 900–910 CrossRef CAS.
  2. F. C. Meunier, Pitfalls and benefits of in situ and operando diffuse reflectance FT-IR spectroscopy (DRIFTS) applied to catalytic reactions, React. Chem. Eng., 2016, 1, 134–141 RSC.
  3. E. Groppo, S. Rojas-Buzo and S. Bordiga, The Role of In Situ/Operando IR Spectroscopy in Unraveling Adsorbate-Induced Structural Changes in Heterogeneous Catalysis, Chem. Rev., 2023, 123, 12135–12169 CrossRef CAS PubMed.
  4. K. Zhao, J. Zhang, W. Luo, M. Li, E. Moioli, M. Spodaryk and A. Züttel, A combined diffuse reflectance infrared Fourier transform spectroscopy–mass spectroscopy–gas chromatography for the operando study of the heterogeneously catalyzed CO2 hydrogenation over transition metal-based catalysts, Rev. Sci. Instrum., 2020, 91, 074102 CrossRef CAS PubMed.
  5. C. Rodríguez, S. Moreno and R. Molina, Operando DRIFT-MS study of oxidative steam reforming of ethanol (OSRE) on Ni-Co mixed oxides under non-equilibrium conditions, Chem. Eng. J., 2024, 480, 148243 CrossRef.
  6. J. Ryczkowski, IR spectroscopy in catalysis, Catal. Today, 2001, 68, 263–381 CrossRef CAS.
  7. L. Liu and A. Corma, Metal Catalysts for Heterogeneous Catalysis: From Single Atoms to Nanoclusters and Nanoparticles, Chem. Rev., 2018, 118, 4981–5079 CrossRef CAS PubMed.
  8. M. Carosso, T. Fovanna, A. Ricchebuono, E. Vottero, M. Manzoli, S. Morandi, R. Pellegrini, A. Piovano, D. Ferri and E. Groppo, Gas phase vs. liquid phase: monitoring H2 and CO adsorption phenomena on Pt/Al2O3 by IR spectroscopy, Catal. Sci. Technol., 2022, 12, 1359–1367 RSC.
  9. I. Jbir, A. Paredes-Nunez, S. Khaddar-Zine, Z. Ksibir, F. Meunier and D. Bianchi, Heat of adsorption of CO on EUROPT-1 using the AEIR method: Effect of analysis parameters, water and sample mode, Appl. Catal., A, 2015, 505, 309–318 CrossRef CAS.
  10. T. Elgayyar, R. Atwi, A. Tuel and F. C. Meunier, Contributions and limitations of IR spectroscopy of CO adsorption to the characterization of bimetallic and nanoalloy catalysts, Catal. Today, 2021, 373, 59–68 CrossRef CAS.
  11. S. K. Cheah, V. P. Bernardet, A. A. Franco, O. Lemaire and P. Gelin, Study of CO and Hydrogen Interactions on Carbon-Supported Pt Nanoparticles by Quadrupole Mass Spectrometry and Operando Diffuse Reflectance FTIR Spectroscopy, J. Phys. Chem. C, 2013, 117, 22756–22767 CrossRef CAS.
  12. L. DeRita, S. Dai, K. Lopez-Zepeda, N. Pham, G. W. Graham, X. Pan and P. Christopher, Catalyst Architecture for Stable Single Atom Dispersion Enables Site-Specific Spectroscopic and Reactivity Measurements of CO Adsorbed to Pt Atoms, Oxidized Pt Clusters, and Metallic Pt Clusters on TiO2, J. Am. Chem. Soc., 2017, 139, 14150–14165 CrossRef CAS PubMed.
  13. L. DeRita, J. Resasco, S. Dai, A. Boubnov, H. V. Thang, A. S. Hoffman, I. Ro, G. W. Graham, S. R. Bare, G. Pacchioni, X. Pan and P. Christopher, Structural evolution of atomically dispersed Pt catalysts dictates reactivity, Nat. Mater., 2019, 18, 746–751 CrossRef CAS PubMed.
  14. M. J. Kale and P. Christopher, Utilizing Quantitative in Situ FTIR Spectroscopy To Identify Well-Coordinated Pt Atoms as the Active Site for CO Oxidation on Al2O3-Supported Pt Catalysts, ACS Catal., 2016, 6, 5599–5609 CrossRef CAS.
  15. S. H. Oh and J. E. Carpenter, The oxidation state and catalytic activity of supported rhodium, J. Catal., 1983, 80, 472–478 CrossRef CAS.
  16. H. Tanaka, M. Taniguchi, M. Uenishi, N. Kajita, I. Tan, Y. Nishihata, J. Mizuki, K. Narita, M. Kimura and K. Kaneko, Self-Regenerating Rh- and Pt-Based Perovskite Catalysts for Automotive-Emissions Control, Angew. Chem., Int. Ed., 2006, 45, 5998–6002 CrossRef CAS PubMed.
  17. H. Asakura, S. Hosokawa, T. Ina, K. Kato, K. Nitta, K. Uera, T. Uruga, H. Miura, T. Shishido, J. Ohyama, A. Satsuma, K. Sato, A. Yamamoto, S. Hinokuma, H. Yoshida, M. Machida, S. Yamazoe, T. Tsukuda, K. Teramura and T. Tanaka, Dynamic Behavior of Rh Species in Rh/Al2O3 Model Catalyst during Three-Way Catalytic Reaction: An Operando X-ray Absorption Spectroscopy Study, J. Am. Chem. Soc., 2018, 140, 176–184 CrossRef CAS PubMed.
  18. A. J. Hoffman, C. Asokan, N. Gadinas, E. Schroeder, G. Zakem, S. V. Nystrom, A. Bean Getsoian, P. Christopher and D. Hibbitts, Experimental and Theoretical Characterization of Rh Single Atoms Supported on γ-Al2O3 with Varying Hydroxyl Contents during NO Reduction by CO, ACS Catal., 2022, 12, 11697–11715 CrossRef CAS.
  19. K. E. Kartavova, M. Yu. Mashkin, M. Yu. Kostin, E. D. Finashina, K. B. Kalmykov, G. I. Kapustin, P. V. Pribytkov, O. P. Tkachenko, I. V. Mishin, L. M. Kustov and A. L. Kustov, Rhodium-Based Catalysts: An Impact of the Support Nature on the Catalytic Cyclohexane Ring Opening, Nanomaterials, 2023, 13, 936 CrossRef CAS PubMed.
  20. C. Yang and C. W. Garl, Infrared Studies of Carbon Monoxide Chemisorbed on Rhodium, J. Phys. Chem., 1957, 61, 1504–1512 CrossRef.
  21. J. A. Anderson and C. H. Rochester, Infrared study of CO adsorption on Pt–Rh/Al2O3 catalysts, J. Chem. Soc., Faraday Trans., 1991, 87, 1479–1483 RSC.
  22. G. Kim, S. Choung, J. Hwang, Y. Choi, S. Kim, D. Shin, J. W. Han and H. Lee, Highly Durable Rh Single Atom Catalyst Modulated by Surface Defects on Fe-Ce Oxide Solid Solution, Angew. Chem., Int. Ed., 2025, 64, e202421218 CrossRef CAS PubMed.
  23. S. Trautmann and M. Baerns, Infrared Spectroscopic Studies of CO Adsorption on Rhodium Supported by SiO2, Al2O3, and TiO2, J. Catal., 1994, 150, 335–344 CrossRef CAS.
  24. A. B. Kroner, M. A. Newton, M. Tromp, O. M. Roscioni, A. E. Russell, A. J. Dent, C. Prestipino and J. Evans, Time-Resolved, In Situ DRIFTS/EDE/MS Studies on Alumina-Supported Rhodium Catalysts: Effects of Ceriation and Zirconiation on Rhodium–CO Interactions, ChemPhysChem, 2014, 15, 3049–3059 CrossRef CAS PubMed.
  25. N. Yang and S. F. Bent, Investigation of inherent differences between oxide supports in heterogeneous catalysis in the absence of structural variations, J. Catal., 2017, 351, 49–58 CrossRef CAS.
  26. M. Frank, R. Kühnemuth, M. Bäumer and H.-J. Freund, Vibrational spectroscopy of CO adsorbed on supported ultra-small transition metal particles and single metal atoms, Surf. Sci., 2000, 454–456, 968–973 CrossRef CAS.
  27. E. K. Schroeder, J. Finzel and P. Christopher, Photolysis of Atomically Dispersed Rh/Al2O3 Catalysts: Controlling CO Coverage in Situ and Promoting Reaction Rates, J. Phys. Chem. C, 2022, 126, 18292–18305 CrossRef CAS.
  28. S. Zhang, Y. Tang, L. Nguyen, Y.-F. Zhao, Z. Wu, T.-W. Goh, J. J. Liu, Y. Li, T. Zhu, W. Huang, A. I. Frenkel, J. Li and F. F. Tao, Catalysis on Singly Dispersed Rh Atoms Anchored on an Inert Support, ACS Catal., 2018, 8, 110–121 CrossRef CAS.
  29. F. C. Meunier, Relevance of IR Spectroscopy of Adsorbed CO for the Characterization of Heterogeneous Catalysts Containing Isolated Atoms, J. Phys. Chem. C, 2021, 125, 21810–21823 CrossRef CAS.
  30. J. A. Mielczarski, External reflection infrared spectroscopy at metallic, semiconductor, and nonmetallic substrates. 1. Monolayer films, J. Phys. Chem., 1993, 97, 2649–2663 CrossRef CAS.
  31. M. Bäumer and H.-J. Freund, Metal deposits on well-ordered oxide films, Prog. Surf. Sci., 1999, 61, 127–198 CrossRef.
  32. J. Libuda, I. Meusel, J. Hoffmann, J. Hartmann, L. Piccolo, C. R. Henry and H.-J. Freund, The CO oxidation kinetics on supported Pd model catalysts: A molecular beam/in situ time-resolved infrared reflection absorption spectroscopy study, J. Chem. Phys., 2001, 114, 4669–4684 CrossRef CAS.
  33. M. Sterrer, T. Risse and H.-J. Freund, Low temperature infrared spectra of CO adsorbed on the surface of MgO(001) thin films, Surf. Sci., 2005, 596, 222–228 CrossRef CAS.
  34. I. V. Yudanov, R. Sahnoun, K. M. Neyman, N. Rösch, J. Hoffmann, S. Schauermann, V. Johánek, H. Unterhalt, G. Rupprechter, J. Libuda and H.-J. Freund, CO Adsorption on Pd Nanoparticles: Density Functional and Vibrational Spectroscopy Studies, J. Phys. Chem. B, 2003, 107, 255–264 CrossRef CAS.
  35. F. M. Hoffmann and M. D. Weisel, Fourier transform infrared reflection absorption spectroscopy studies of adsorbates and surface reactions: Bridging the pressure gap between surface science and catalysis, J. Vac. Sci. Technol., A, 1993, 11, 1957–1963 CrossRef CAS.
  36. G. Rupprechter, Sum Frequency Generation and Polarization–Modulation Infrared Reflection Absorption Spectroscopy of Functioning Model Catalysts from Ultrahigh Vacuum to Ambient Pressure, in Advances in Catalysis, Elsevier, 2007, vol. 51, pp. 133–263 Search PubMed.
  37. R. Bliem, E. McDermott, P. Ferstl, M. Setvin, O. Gamba, J. Pavelec, M. A. Schneider, M. Schmid, U. Diebold, P. Blaha, L. Hammer and G. S. Parkinson, Subsurface cation vacancy stabilization of the magnetite (001) surface, Science, 2014, 346, 1215–1218 CrossRef CAS PubMed.
  38. R. Bliem, J. Pavelec, O. Gamba, E. McDermott, Z. Wang, S. Gerhold, M. Wagner, J. Osiecki, K. Schulte, M. Schmid, P. Blaha, U. Diebold and G. S. Parkinson, Adsorption and incorporation of transition metals at the magnetite Fe3O4(001) surface, Phys. Rev. B, 2015, 92, 075440 CrossRef.
  39. M. A. Sharp, C. J. Lee, M. Mahapatra, R. S. Smith, B. D. Kay and Z. Dohnálek, Preparation and Characterization of Model Homotopic Catalysts: Rh Adatoms, Nanoparticles, and Mixed Oxide Surfaces on Fe3O4(001), J. Phys. Chem. C, 2022, 126, 14448–14459 CrossRef CAS.
  40. Z. Jakub, J. Hulva, M. Meier, R. Bliem, F. Kraushofer, M. Setvin, M. Schmid, U. Diebold, C. Franchini and G. S. Parkinson, Local Structure and Coordination Define Adsorption in a Model Ir1/Fe3O4 Single-Atom Catalyst, Angew. Chem., Int. Ed., 2019, 58, 13961–13968 CrossRef CAS PubMed.
  41. Z. Jakub, J. Hulva, F. Mirabella, F. Kraushofer, M. Meier, R. Bliem, U. Diebold and G. S. Parkinson, Nickel Doping Enhances the Reactivity of Fe3O4(001) to Water, J. Phys. Chem. C, 2019, 123, 15038–15045 CrossRef CAS.
  42. Z. Jakub, J. Hulva, P. T. P. Ryan, D. A. Duncan, D. J. Payne, R. Bliem, M. Ulreich, P. Hofegger, F. Kraushofer, M. Meier, M. Schmid, U. Diebold and G. S. Parkinson, Adsorbate-induced structural evolution changes the mechanism of CO oxidation on a Rh/Fe3O4(001) model catalyst, Nanoscale, 2020, 12, 5866–5875 RSC.
  43. C. J. Lee, M. A. Sharp, B. A. Jackson, M. Mahapatra, S. Raugei, L. Árnadóttir, M.-S. Lee, B. D. Kay and Z. Dohnálek, Dynamic Activation of Single-Atom Catalysts by Reaction Intermediates: Conversion of Formic Acid on Rh/Fe3O4 (001), ACS Catal., 2024, 14, 15396–15406 CrossRef CAS.
  44. M. Mahapatra, M. A. Sharp, C. J. Lee, Y. Zhu, O. Y. Gutiérrez, B. D. Kay and Z. Dohnálek, The evolution of model Rh/Fe3O4(001) catalysts in hydrogen environments, Surf. Sci., 2025, 751, 122617 CrossRef CAS.
  45. M. A. Sharp, C. J. Lee, M. Mahapatra, B. D. Kay and Z. Dohnálek, Active Site Evolution during Formic Acid Conversion on Rh-Substituted Fe3O4(001), Top. Catal., 2025, 68, 1848–1856 CrossRef CAS.
  46. C. Wang, P. Sombut, L. Puntscher, Z. Jakub, M. Meier, J. Pavelec, R. Bliem, M. Schmid, U. Diebold, C. Franchini and G. S. Parkinson, CO-Induced Dimer Decay Responsible for Gem-Dicarbonyl Formation on a Model Single-Atom Catalyst, Angew. Chem., Int. Ed., 2024, 63, e202317347 CrossRef CAS PubMed.
  47. J. Hulva, M. Meier, R. Bliem, Z. Jakub, F. Kraushofer, M. Schmid, U. Diebold, C. Franchini and G. S. Parkinson, Unraveling CO adsorption on model single-atom catalysts, Science, 2021, 371, 375–379 CrossRef CAS PubMed.
  48. D. Rath, V. Mikerásek, C. Wang, M. Eder, M. Schmid, U. Diebold, G. S. Parkinson and J. Pavelec, Infrared reflection absorption spectroscopy setup with incidence angle selection for surfaces of non-metals, Rev. Sci. Instrum., 2024, 95, 065106 CrossRef CAS PubMed.
  49. J. Pavelec, J. Hulva, D. Halwidl, R. Bliem, O. Gamba, Z. Jakub, F. Brunbauer, M. Schmid, U. Diebold and G. S. Parkinson, A multi-technique study of CO2 adsorption on Fe3O4 magnetite, J. Chem. Phys., 2017, 146, 014701 CrossRef PubMed.
  50. D. Halwidl, Development of an Effusive Molecular Beam Apparatus, Springer Fachmedien Wiesbaden, Wiesbaden, 2016 Search PubMed.
  51. J. I. J. Choi, W. Mayr-Schmölzer, F. Mittendorfer, J. Redinger, U. Diebold and M. Schmid, The growth of ultra-thin zirconia films on Pd3Zr(0001), J. Phys.: Condens. Matter, 2014, 26, 225003 CrossRef CAS PubMed.
  52. M. Antlanger, W. Mayr-Schmölzer, J. Pavelec, F. Mittendorfer, J. Redinger, P. Varga, U. Diebold and M. Schmid, Pt3Zr(0001): A substrate for growing well-ordered ultrathin zirconia films by oxidation, Phys. Rev. B: Condens. Matter Mater. Phys., 2012, 86, 035451 CrossRef.
  53. F. J. Giessibl, The qPlus sensor, a powerful core for the atomic force microscope, Rev. Sci. Instrum., 2019, 90, 011101 CrossRef PubMed.
  54. G. Kresse and J. Furthmüller, Efficiency of ab-initio total energy calculations for metals and semiconductors using a plane-wave basis set, Comput. Mater. Sci., 1996, 6, 15–50 CrossRef CAS.
  55. G. Kresse and D. Joubert, From ultrasoft pseudopotentials to the projector augmented-wave method, Phys. Rev. B: Condens. Matter Mater. Phys., 1999, 59, 1758–1775 CrossRef CAS.
  56. P. E. Blöchl, Projector augmented-wave method, Phys. Rev. B: Condens. Matter Mater. Phys., 1994, 50, 17953–17979 CrossRef PubMed.
  57. J. P. Perdew, K. Burke and M. Ernzerhof, Generalized Gradient Approximation Made Simple, Phys. Rev. Lett., 1996, 77, 3865–3868 CrossRef CAS PubMed.
  58. S. Grimme, S. Ehrlich and L. Goerigk, Effect of the damping function in dispersion corrected density functional theory, J. Comput. Chem., 2011, 32, 1456–1465 CrossRef CAS PubMed.
  59. A. Kiejna, T. Ossowski and T. Pabisiak, Surface properties of the clean and Au/Pd covered Fe3O4(111): DFT and DFT + U study, Phys. Rev. B: Condens. Matter Mater. Phys., 2012, 85, 125414 CrossRef.
  60. I. Bernal-Villamil and S. Gallego, Charge order at magnetite Fe3O4(001): surface and Verwey phase transitions, J. Phys.: Condens. Matter, 2015, 27, 012001 CrossRef CAS PubMed.
  61. N. Mina-Camilde, C. I. Manzanares and J. F. Caballero, Molecular Constants of Carbon Monoxide at v = 0, 1, 2, and 3: A Vibrational Spectroscopy Experiment in Physical Chemistry, J. Chem. Educ., 1996, 73, 804 CrossRef CAS.
  62. M. Eder, F. J. Lewis, J. I. Hütner, P. Sombut, M. Hao, D. Rath, J. Balajka, M. Wagner, M. Meier, C. Franchini, U. Diebold, M. Schmid, F. Libisch, J. Pavelec and G. S. Parkinson, Multi-Technique Characterization of Rhodium Gem-Dicarbonyls on TiO2(110), Chem. Sci., 2025, 16, 22481–22489 RSC.
  63. G. Bistoni, S. Rampino, N. Scafuri, G. Ciancaleoni, D. Zuccaccia, L. Belpassi and F. Tarantelli, How π back-donation quantitatively controls the CO stretching response in classical and non-classical metal carbonyl complexes, Chem. Sci., 2016, 7, 1174–1184 RSC.
  64. F. C. Meunier, Relevance of IR Spectroscopy of Adsorbed CO for the Characterization of Heterogeneous Catalysts Containing Isolated Atoms, J. Phys. Chem. C, 2021, 125, 21810–21823 CrossRef CAS.
  65. N. G. Petrik and G. A. Kimmel, Adsorption Geometry of CO versus Coverage on TiO2(110) from s- and p-Polarized Infrared Spectroscopy, J. Phys. Chem. Lett., 2012, 3, 3425–3430 CrossRef CAS PubMed.
  66. K. I. Hadjiivanov and G. N. Vayssilov, in Advances in Catalysis, Academic Press, 2002, vol. 47, pp. 307–511 Search PubMed.
  67. G. S. Parkinson, T. A. Manz, Z. Novotný, P. T. Sprunger, R. L. Kurtz, M. Schmid, D. S. Sholl and U. Diebold, Antiphase domain boundaries at the Fe3O4(001) surface, Phys. Rev. B: Condens. Matter Mater. Phys., 2012, 85, 195450 CrossRef.
  68. O. Gamba, J. Hulva, J. Pavelec, R. Bliem, M. Schmid, U. Diebold and G. S. Parkinson, The Role of Surface Defects in the Adsorption of Methanol on Fe3O4(001), Top. Catal., 2017, 60, 420–430 CrossRef CAS PubMed.
  69. M. A. Albrahim, A. Shrotri, R. R. Unocic, A. S. Hoffman, S. R. Bare and A. M. Karim, Size-Dependent Dispersion of Rhodium Clusters into Isolated Single Atoms at Low Temperature and the Consequences for CO Oxidation Activity, Angew. Chem., 2023, 135, e202308002 CrossRef.
  70. A. H. Jenkins, E. E. Dunphy, M. F. Toney, C. B. Musgrave and J. W. Medlin, Tailoring the Near-Surface Environment of Rh Single-Atom Catalysts for Selective CO2 Hydrogenation, ACS Catal., 2023, 13, 15340–15350 CrossRef CAS.
  71. J. Hulva, Z. Jakub, Z. Novotny, N. Johansson, J. Knudsen, J. Schnadt, M. Schmid, U. Diebold and G. S. Parkinson, Adsorption of CO on the Fe3O4(001) Surface, J. Phys. Chem. B, 2018, 122, 721–729 CrossRef CAS PubMed.
  72. E. Şaşıoğlu, C. Friedrich and S. Blügel, Effective Coulomb interaction in transition metals from constrained random-phase approximation, Phys. Rev. B: Condens. Matter Mater. Phys., 2011, 83, 121101 CrossRef.
  73. G. Lan, J. Song and Z. Yang, A linear response approach to determine Hubbard U and its application to evaluate properties of Y2B2O7, B = transition metals 3d, 4d and 5d, J. Alloys Compd., 2018, 749, 909–925 CrossRef CAS.
  74. R. Tesch and P. M. Kowalski, Hubbard U parameters for transition metals from first principles, Phys. Rev. B, 2022, 105, 195153 CrossRef CAS.

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