Open Access Article
Zihao Zhang
a,
Jun Kano
*a,
Shu Morita
b,
Hiromu Shimokawa
e and
Minoru Osada
cd
aFaculty of Environmental, Life, Natural Science and Technology, Okayama University, Okayama 700-8530, Japan. E-mail: kano-j@cc.okayama-u.ac.jp
bInstitute of Materials and Systems for Sustainability (IMaSS), Nagoya University, Nagoya 464-8601, Japan
cDepartment of Materials Chemistry and Institute of Materials and Systems for Sustainability (IMaSS), Nagoya University, Nagoya 464-8601, Japan
dResearch Institute for Quantum and Chemical Innovation, Institutes of Innovation for Future, Society, Nagoya University, Nagoya 464-8601, Japan
eGraduate School of Interdisciplinary Science and Engineering in Health Systems, Okayama University, Okayama 700-8530, Japan
First published on 5th June 2026
Hydrated layered oxides are widely encountered, yet the presence of disordered interlayer water often complicates crystal structure determination from laboratory X-ray diffraction. Here, we report the crystal structure of the Dion–Jacobson-type layered perovskite-related material HCa2Nb3O10·1.5H2O, solved from synchrotron X-ray diffraction data by combining direct methods in reciprocal space, Le Bail whole-pattern fitting, and Rietveld refinement. The hydrate crystallizes in a tetragonal structure with space group P42212 (a = 7.7070(5) Å, c = 32.4870(3) Å). Incorporation of partially occupied interlayer water-oxygen sites on the (110) plane at z = 0 and 1/2 successfully reproduces the low-angle 00l reflections while preserving the Ca2Nb3O10 framework. The resulting crystallographic model explicitly resolves the arrangement of interlayer water molecules and provides a robust structural foundation for band-structure calculations as well as for the rational design of hydration-controlled intercalation, exfoliation, and composite materials based on layered perovskite-related materials.
For the assignment of the space group of HCNO hydrate, diffraction pattern indexing and space group candidate searching were performed using EXPO2014 software after peak-shape modelling and background subtraction.11 The indexing figures of merit indicated that the crystal belongs to the tetragonal crystal system, and the extinction-symbol analysis of the normalized intensities indicated that its Bravais lattice is of primitive (P)-type.14,15 Subsequently, a Le Bail whole-pattern decomposition was performed in the tetragonal space group P4/mmm, which has no systematic extinctions, to refine the unit-cell metrics and profile parameters. To assess the possible presence of a superstructure, peak positions were compared on the basis of whole-pattern Le Bail fitting using several candidate cells derived from the parent tetragonal lattice. Smaller trial cells, including a × a × c and
, were also examined, but they failed to reproduce the additional weak reflections. Among the tested models, the 2a × 2a × 2c supercell provided the best overall match (see Fig. S1, SI). Using this refined cell, the space group determination module of EXPO2014 evaluated candidate extinction symbols based on systematic absences and the statistics of normalized intensities. Among the tetragonal space groups proposed by EXPO2014, P42212 and its minimal supergroup P42/nbc received the highest scores. Other high-ranking candidates were likewise P-type tetragonal space groups with P42-derived symmetry, which are supergroups of P42212 in the group–subgroup hierarchy, reinforcing the above assignment of a P-type tetragonal lattice. According to the group–subgroup relations, P42212 can be obtained from P42/nbc via the maximal-subgroup chain P42/nbc → P4222 → P42212 (overall subgroup index 4), indicating a simple symmetry-lowering relationship between the two candidate space groups. To further verify these candidate results, we compared the integrated reflection intensities obtained from a Le Bail fit in P4/mmm with the systematic-absence conditions for the candidates. No significant intensity above background was detected for 00l with l odd or for h00 with h odd, and hk0 reflections satisfied h + k = 2n. These observations are consistent with the extinction requirements of P42/nbc and P42212.
Based on the space group candidates obtained by EXPO2014, together with the extinction verification from integrated intensities of a Le Bail whole-pattern decomposition, Rietveld refinement was carried out by using RIETAN-FP for P4/mmm, P42/nbc, and P42212.13 A modified split pseudo-Voigt function with a partial profile relaxation was used as the profile function.16 Structural models for HCNO hydrate were constructed based on the layer-stacking pattern and cation positions previously established for HCNO.10 In these models, interlayer water species were not modelled at this stage; such NbO6 octahedral framework-only configuration will hereafter be referred to as “framework-only model”. The resulting models, which contained only the NbO6 octahedral framework, were refined in P4/mmm, P42/nbc and P42212 using the same unit-cell and profile parameters. Note that, due to the plate-like particle shape of the HCNO hydrate, preferred orientation had to be considered, even though the SR-XRD measurements were performed while rotating the sample inside the capillary. A partial profile relaxation was applied in the Rietveld refinement, which improved the fit for the reflections in the low-2θ region.
Fig. 2 shows the result of the Rietveld refinement for the P4/mmm, P42/nbc, and P42212 space groups. The reliability indices show a clear improvement from P4/mmm to P42/nbc and P42212, with the lowest Rwp and S values obtained for P42212, indicating that the lower-symmetry models reproduce the observed intensity distribution more accurately under comparable refinement conditions. Clear differences among the three refinements are observed for reflections that are sensitive to distortions of the NbO6 octahedral framework, including subtle displacements of the Ca cations within the Ca2Nb3O10 framework. For the low-angle 00l reflections, the difference curves reveal larger deviations in P4/mmm than in P42/nbc and P42212, with P42212 giving the lowest residuals among the three models. A similar tendency is observed for several reflections shown in the low-2θ region, such as 200, 206, and 208, where the calculated intensities for P4/mmm deviate more strongly from the observed ones than in the refinements using P42/nbc or P42212. These differences are consistent with symmetry lowering from P4/mmm to P42/nbc and P42212, which allows additional distortion modes of the NbO6 octahedral framework that are incompatible with P4/mmm. Nevertheless, even in P42212 noticeable deviations remain for reflections in the low-2θ region, particularly the 00l series, indicating that a model containing only the NbO6 octahedral framework does not fully account for the observed scattering intensities. Given that HCNO hydrate has the composition HCa2Nb3O10·1.5H2O, this remaining discrepancy can be derived from a scattering contribution from interlayer water molecules that is not included in the present framework-only model.
To resolve the remaining discrepancies in the framework without interlayer water molecules, further Rietveld refinements were carried out, introducing crystallization water into the interlayer region of the model. Because hydrogen atoms scatter X-rays only very weakly and their coordinates cannot be determined reliably from powder data,17 only the oxygen atoms of the interlayer water molecules were refined as crystallographic sites in the model, and the associated hydrogen atoms were not included in the refinement.18 In related layered perovskite oxides, distinct hydration arrangements have been reported depending on the interlayer species and the degree of hydration; a bilayer-hydrate model accommodating interlayer K+ ions solvated by two water layers has been proposed for restacked KCa2Nb3O10·1.3H2O.19 Such a bilayer arrangement is typically associated with the presence of solvated interlayer alkali cations and may therefore not be directly transferable to the present protonated hydrate. More specific water orientations have also been discussed for stoichiometrically hydrated Ruddlesden–Popper-type oxides, where low-temperature neutron powder diffraction analysis revealed intact H2O in a vertical “pillared” orientation hydrogen-bonded to apical oxygen atoms.20 However, because hydrogen atoms are poor X-ray scatterers and their positions are difficult to determine reliably from X-ray powder diffraction data, the present SR-XRD refinement primarily constrains the average positions/occupancies of the interlayer oxygen sites, leaving the H2O orientation underdetermined. Given the limited sensitivity of X-ray powder data to hydrogen and the likelihood of orientational/disorder effects, we adopted an average-structure description guided by previous neutron-diffraction-based analyses of hydrated layered perovskite oxides, in which interlayer H2O/H3O+ species statistically occupy sites around the body-center of the interlayer cavity defined by apical oxygens of adjacent NbO6 octahedral layers.21 Accordingly, the water molecules were assumed to reside around the mid-planes of the interlayer between neighbouring NbO6 octahedral layers, corresponding to the planes z = 0 and 1/2 in the unit cell. We compared special positions with multiplicities of 2 and 4 against two symmetry-equivalent sets of multiplicity 8 near z = 0 and 1/2, refining a partial occupancy for the latter so that the total interlayer water content matches the nominal stoichiometry of HCa2Nb3O10·1.5H2O; the latter gave lower residuals and was therefore adopted. For schematic visualization of hydrogen bonding, the interlayer H sites were placed at fixed nominal positions slightly displaced from the interlayer water planes, with z = 0.05. Because the present SR-XRD data cannot constrain the precise coordinates of the H sites, these H coordinates were not refined and should not be interpreted as experimentally determined H positions. All other refinement parameters and the NbO6 octahedral framework model were kept identical to those used in the framework-only refinements described above.
Fig. 3 shows the Rietveld refinement results obtained using models that include partially occupied interlayer water-oxygen sites (Ow) for the P4/mmm, P42/nbc and P42212 space groups. Compared with the framework-only refinements in Fig. 2, the agreement factors are further reduced for all three space groups, with P42212 again giving the lowest values (Rwp = 7.76 and S = 1.38). Hamilton's R-factor ratio test confirms that the improvements obtained with the lower-symmetry models are statistically significant in both the framework-only refinements and the refinements including interlayer water-oxygen sites (Table S2 and Fig. S2, SI).22 In addition, the difference curves around the low-angle reflections become noticeably flatter for all three models, especially for the 00l series. The deviations around the 002 and 008 peaks that remained in the framework-only model are largely reduced once interlayer water is included in the refinement, and the higher-2θ region also shows smoother difference curves. This indicates that introducing interlayer water improves the overall fit to the diffraction pattern. For P42212 in particular, the difference curve is basically flat over the whole 2θ range, apart from a small residual at the intense 002 reflection; no other significant residuals are observed. Although the differences between the three calculated profiles in Fig. 3 are small in appearance, the Rietveld agreement factors still favour P42212 over P42/nbc and P4/mmm, in accord with the EXPO2014 space group analysis and with the framework-only refinements in Fig. 2. On this basis, the space group of HCNO hydrate was determined to be P42212 as the most appropriate description of HCNO hydrate. Fig. 4, drawn using VESTA software,23 shows the refined crystal structure with the P42212 space group. The positional disorder of this interlayer water was represented by partially occupied O sites in these planes. The fractional coordinates and isotropic atomic displacement parameters for HCNO hydrate are listed in Table 1, and the unit cell parameters are as follows: a = 7.7070(5) Å, c = 32.4870(3) Å, and Z = 8. Notably, the increase in the c-axis lattice parameter is attributed not only to the introduction of intercalated water, which slightly increases the interlayer spacing relative to non-hydrated HCa2Nb3O10, but also to a subtle influence of the intercalated water on the NbO6 octahedral framework.
![]() | ||
| Fig. 4 Layer-stacking model of HCa2Nb3O10·1.5H2O refined in space group P42212, viewed along the b axis. Three NbO6 octahedral layers and the interlayer water-oxygen planes at z = 0 and 1/2 are shown; green octahedra represent NbO6 units and blue spheres denote Ca atoms, while the white spheres labelled H indicate the protons in HCNO used schematically to illustrate hydrogen bonding. The crystal structures were drawn with VESTA.23 | ||
, and were evaluated within the Ca2Nb3O10 framework only
| HCa2Nb3O10·1.5H2O tetragonal P42212 | |||||||
|---|---|---|---|---|---|---|---|
| a = 7.7070(5) Å, c = 32.4870(3) Å | |||||||
| Atom | Site | g | x | y | z | B (Å2) | BVS |
| Rwp = 7.76, S = 1.38. | |||||||
| H1 | 8g | 0.5 | 1/4 | 1/4 | 0.05 (fixed) | 0 (fixed) | — |
| H2 | 8g | 0.5 | 1/4 | 3/4 | 0.05 (fixed) | 0 (fixed) | — |
| Ca1 | 8g | 1 | 0.2509(16) | 0.2535(16) | 0.1837(2) | 1.31(4) | — |
| Ca2 | 8g | 1 | 0.2569(15) | 0.7447(17) | 0.1790(2) | 1.31(—) | — |
| Nb1 | 4d | 1 | 1/2 | 0 | 0.1151(10) | 0.36(3) | 5.62 |
| Nb2 | 4d | 1 | 1/2 | 0 | 0.2497(15) | 0.36(—) | 6.51 |
| Nb3 | 4d | 1 | 1/2 | 0 | 0.3800(12) | 0.36(—) | 5.20 |
| Nb4 | 4c | 1 | 0 | 0 | 0.1218(15) | 0.77(4) | 4.70 |
| Nb5 | 4c | 1 | 0 | 0 | 0.2485(19) | 0.77(—) | 5.26 |
| Nb6 | 4c | 1 | 0 | 0 | 0.3816(15) | 0.77(—) | 5.25 |
| Ow1 | 8g | 0.75 | 0.5732(6) | 0.2017(5) | 0 | 11.81(105) | — |
| Ow2 | 8g | 0.75 | 0.3140(6) | 0.1385(5) | 0 | 11.81(—) | — |
| O1 | 8g | 1 | 0.2411(6) | −0.0063(7) | 0.3641(6) | 1.53(12) | 2.20 |
| O2 | 8g | 1 | −0.0094(6) | 0.2436(6) | 0.3726(6) | 1.53(—) | 2.16 |
| O3 | 8g | 1 | 0.2755(2) | 0.0000(4) | 0.2451(6) | 1.53(—) | 2.45 |
| O4 | 8g | 1 | −0.0777(14) | 0.2532(5) | 0.2481(9) | 1.53(—) | 1.90 |
| O5 | 8g | 1 | 0.0104(6) | 0.2471(5) | 0.1300(7) | 1.53(—) | 2.19 |
| O6 | 8g | 1 | 0.2553(5) | 0.0013(7) | 0.1420(6) | 1.53(—) | 2.01 |
| O7 | 4d | 1 | 1/2 | 0 | 0.0670(13) | 5.06(65) | 2.56 |
| O8 | 4d | 1 | 0 | 1/2 | 0.0682(15) | 5.06(—) | 1.84 |
| O9 | 4d | 1 | 1/2 | 0 | 0.3094(13) | 5.06(—) | 1.78 |
| O10 | 4d | 1 | 0 | 1/2 | 0.3119(14) | 5.06(—) | 1.57 |
| O11 | 4c | 1 | 0 | 0 | 0.0650(14) | 4.40(60) | 1.19 |
| O12 | 4c | 1 | 1/2 | 1/2 | 0.0612(12) | 4.40(—) | 1.15 |
| O13 | 4c | 1 | 0 | 0 | 0.3053(16) | 4.40(—) | 1.94 |
| O14 | 4c | 1 | 1/2 | 1/2 | 0.3053(16) | 4.40(—) | 2.26 |
This structural model also raises the question of the appropriate hydration stoichiometry for the refinement. For the refinements including Ow, the hydration stoichiometry of HCNO was also evaluated. Jacobson first reported that HCNO incorporates 1.5H2O upon protonation of KCNO, with the water content determined by TGA.9 Although many subsequent studies have reported values consistent with this result,24 larger values (e.g., 1.6 or ca. 1.9) have also been reported.7,25 We therefore examined the sensitivity of the refinement to the occupancy of Ow. Trial refinements in which the Ow occupancy was varied showed only a shallow minimum in Rwp as a function of occupancy (Fig. S3, SI), indicating limited sensitivity of the data to this parameter. To maintain consistency and reliability, the Ow occupancy was fixed in the final refinements at the nominal value corresponding to HCa2Nb3O10·1.5H2O, following the nominal composition previously reported by Jacobson.
To further evaluate the local coordination geometry, we examined the bond-valence sums (BVSs) for the refined structure (see Table 1). The relatively high BVS at the Nb2 site (approximately 6.5) is mainly attributable to the presence of two particularly short Nb2–O3 bonds. Because bond valence depends exponentially on bond length, such local shortening can lead to a significant increase in the BVS at a specific site. Therefore, this result should be understood as a local feature of the distorted NbO6 octahedron rather than as evidence against the overall structural model. This tendency may also be qualitatively consistent with the covalent character of the Nb–O bonds. The resulting structural model is essentially consistent with earlier descriptions of HCNO, and the intercalated water did not induce any major rearrangement of the Ca2Nb3O10 framework.
Supplementary information (SI) is available. The Supplementary Information includes crystallographic parameters for dehydrated HCNO (Table S1), comparison of candidate supercells by Le Bail analysis (Fig. S1), statistical evaluation of the Rietveld refinements by Hamilton’s R-factor ratio test (Table S2 and Fig. S2), and the Rwp dependence on the constrained Ow occupancy (Fig. S3). See DOI: https://doi.org/10.1039/d5dt03086b.
CCDC 2504732 (HCa2Nb3O10) and 2556680 (HCa2Nb3O10·1.5H2O) contain the supplementary crystallographic data for this paper.26a,b
Additional information, such as input files for calculations and scripts used for analysis, can be provided upon request.
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