Open Access Article
S. K. Hadjikakou
*a,
T. M. Koufoua,
C. N. Banti
*a,
N. Tsoureas
b,
C. P. Raptopoulouc,
V. Psycharis
c and
C. A. Mitsopoulou
b
aBiological Inorganic Chemistry Laboratory, Department of Chemistry, University of Ioannina, 45110 Ioannina, Greece. E-mail: shadjika@uoi.gr; cbanti@uoi.gr; Tel: +30-26510-08374 Tel: +30-26510-08362
bInorganic Chemistry Laboratory, Department of Chemistry National and Kapodistrian University of Athens, Athens, Greece
cInstitute of Nanoscience and Nanotechnology, NCSR “Demokritos”, Athens, Greece
First published on 13th January 2026
Copper(II) nitrate reacts with tris(m-tolyl)phosphine (m-MePh)3P in 1
:
2 and 1
:
3 molar ratios to form [Cu((m-MePh)3P)2(NO3)] (1) which contains two isomers (1A and 1B) in the crystal lattice and [Cu((m-MePh)3P)3(NO3)] (2). The reaction of copper(II) nitrate with tris(p-tolyl)phosphine (p-MePh)3P in 1
:
3 molar ratio results in the {[Cu((p-MePh)3P)3(NO3)]·(DMF)·(H2O)} (3) complex. The complexes were characterized in the solid state using melting point (m.p), X-ray fluorescence spectroscopy (XRF), and attenuated total reflectance-Fourier transform infra-red (ATR-FT-IR) spectroscopy, and in solution using cryoscopy, ultraviolet–visible (UV-vis) and nuclear magnetic resonance (1H-NMR) spectroscopy. Their crystal structures were determined using single crystal X-ray crystallography in the solid state while the molecular weight was calculated using cryoscopy. A CCDC search shows that 1A and 1B are the first known chiral Cu(I) complexes of the CuP2O2 core. Binding affinity of complexes 1–3 toward calf thymus DNA (CT-DNA) was investigated ex vivo using UV-vis and fluorescence spectroscopy, viscosity measurements, and DNA denaturation assays. Their lipoxygenase (LOX) inhibitory activity was also studied. In silico computations further rationalized the DNA and LOX interactions with 1–3. In vitro assays were conducted to evaluate the activity of 1–3 against human breast adenocarcinoma (MCF-7) cells, and the results are presented herein.
Because the interaction of anticancer agents with DNA is fundamental – governing their ability to disrupt essential processes such as replication and transcription – clarifying the principles that control this interaction is crucial for the rational design of new drugs. For this reason, complexes are designed with variations in steric volume, molecular weight, geometry, and electrostatic potential, aiming to fine-tune their binding affinity and selectivity toward DNA. These structural modifications allow the systematic study of steric and electronic effects that impose the mode and strength of DNA binding.11–18
Although copper chemistry is dominated by Cu(II) compounds due to the instability of Cu(I), the latter are highly relevant biologically.8,19 Heteroleptic copper(I) complexes incorporating both phosphine and N,N-diimine ligands exhibit notable stability under aerobic conditions and display significant cytotoxic activity against tumor cells.8 Stability is promoted by the strong interaction of soft P-donor atoms with the electron-rich Cu(I)-d10 metal center.8
In the course of our studies in the field of drug design and development of new chemotherapeutics which interact with DNA,11–18,20–22 we report here the synthesis of the complexes with formulae [Cu((m-MePh)3P)2(NO3)] (1) (two isomers co-crystallized, 1A and 1B), [Cu((m-MePh)3P)3(NO3)] (2) and {[Cu((p-MePh)3P)3(NO3)]·(DMF)·(H2O)} (3), (m-MePh)3P = tris(m-tolyl)phosphine and (p-MePh)3P = tris(p-tolyl)phosphine (Scheme 1). The new agents were characterized using m.p., XRF, ATR-IR, cryoscopy, UV-vis and 1H-NMR spectroscopy. The binding affinity of complexes 1–3 towards calf thymus DNA (CT-DNA) was investigated ex vivo using UV-vis, fluorescence spectroscopy, viscosity measurements, DNA denaturation assays and molecular docking computations. Ex vivo and in silico studies were also performed towards LOX. Moreover an in vitro assay was conducted to evaluate the activity of 1–3 against MCF-7 cells.
Compounds 1 and 2 were obtained based on the different copper/phosphorus molar ratios in a MeOH/MeCN solvent system at 50 °C (Scheme 2, eqn (1) and (2)). Crystals of 1 were obtained from DMF, while those of 2 were obtained from DMSO. Compound 3 was obtained from DMF at 100 °C in 40 minutes (Scheme 2 (eqn (3))). The crystals were stored at room temperature. Complexes 1 and 2 are highly soluble in DMF and DMSO and soluble in CH2Cl2, CHCl3, acetone, MeOH and MeCN while complex 3 is highly soluble in DMF and DMSO.
![]() | ||
| Fig. 1 XRF spectra of 1–3. The Cu Ka1, Ka2 peaks were used for quantitative determination of copper in the samples. | ||
:
49 v/v) solution with a freezing point osmometer. 1 μL solution of 1–3 (1 mg per 100 μL of DMSO) was diluted with 50 μL of double distilled water (ddw). The MWs were calculated to be 730.65 g mol−1 for 1 (calc. for [Cu((m-MePh)3P)2(NO3)]: 733.44 g mol−1), 1010.50 g mol−1 for 2 (calc. for [Cu((m-MePh)3P)3(NO3)]: 1037.54 g mol−1) and 1140.89 g mol−1 for 3 (calc. for {[Cu((p-MePh)3P)3(NO3)]·(DMF)·(H2O)}: 1129.75 g mol−1). These values confirm the retention of the formulae in solution.
Single-crystal X-ray diffraction analyses revealed that the copper(I) complexes [Cu((m-MePh)3P)2(NO3)] (1), [Cu((m-MePh)3P)3(NO3)] (2), and {[Cu((p-MePh)3P)3(NO3)]·(DMF)·(H2O)} (3) are all mononuclear species containing discrete molecules in the solid state. The coordination geometry around copper in all three complexes is distorted tetrahedral, with variations dictated by the number and steric profile of the coordinated phosphine ligands.
[Cu((m-MePh)3P)2(NO3)] (1A and 1B) crystallizes in the orthorhombic, non-centrosymmetric and enantiomorphic space group Pca21 (no. 29) (Table 1). The absence of inversion and mirror symmetry in Pca21 implies that the crystal adopts a single handedness. Crystallization in Pca21 demonstrates that the coordination environment around Cu(I) (with two tris(m-tolyl)phosphines and nitrate) is chiral in the solid state; only one enantiomorphic form is present in the measured crystal, and the small, positive Flack value of 0.056(13), with low standard uncertainty, confirms the stereochemical sense reported. To the best of our knowledge and following a thorough search of the Cambridge Crystallographic Database, the structures of 1 (1A and 1B) constitute the first reported examples of Cu(I) complexes that exhibit molecular chirality while simultaneously incorporating two phosphine ligands and a chelating nitrate group.23 These structures therefore represent unique chiral Cu(I) species within this coordination motif. Two crystallographically independent isomeric complexes (1A and 1B) occupy general positions and share the same absolute configuration, consistent with crystallization in an enantiomorphic space group.
| Space group | Cu1–P1 | Cu1–P2 | Cu1–P3 | Cu1–O1 | Cu1–O3 | P1–Cu–P2 | P1–Cu–P3 | P2–Cu–P3 | P1–Cu–O1 | P1–Cu–O3 | P2–Cu–O1 | P2–Cu–O3 | P3–Cu–O1 | O1–Cu–O3 | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CuP2O2 | |||||||||||||||
| 1A | Pca21 | 2.2213(15) | 2.2200(14) | 2.234(4) | 2.177(3) | 129.29(5) | 121.28(12) | 108.45(10) | 104.61(11) | 113.49(10) | 58.58(13) | ||||
| 1B | Pca21 | 2.2152(13) | 2.2257(16) | 2.174(3) | 2.221(4) | 129.82(5) | 117.22(11) | 110.41(10) | 104.57(11) | 114.51(11) | 58.94(15) | ||||
NITPPC01 24 |
C2/c | 2.2490(17) | 2.2490(17) | — | 2.197(5) | 2.197(5) | 130.87(6) | — | — | 108.48(14) | 114.29(14) | 114.29(14) | 108.48(14) | — | 57.70(17) |
NITPPC02 25 |
C2/c | 2.231(5) | 2.231(5) | — | 2.205(5) | 2.205(5) | 130.95(7) | — | — | 114.45(9) | 108.34(9) | 108.34(9) | 114.45(9) | — | 57.35(10) |
NITPPC20 26 |
I2/a | 2.256(2) | 2.256(2) | — | 2.222(2) | 2.222(2) | 131.11(7) | 108.30(7) | 114.30(7) | 114.30(7) | 108.30(7) | 57.53(7) | |||
YUYMIQ 27 |
P21/c | 2.2693(10) | 2.2663(10) | 2.193(3) | 126.33(3) | 106.45(10) | 115.27(10) | ||||||||
ZACZUY 28 |
P21/c | 2.253(4) | 2.253(4) | 2.215(12) | 2.185(9) | 128.03(12) | 117.2(3) | 116.3(2) | 104.9(3) | 111.9(2) | 56.1(4) | ||||
| CuP3O | |||||||||||||||
| 2 | P21/c | 2.3217(7) | 2.3283(6) | 2.2963(6) | 2.1182(17) | 120.30(2) | 114.88(2) | 111.76(2) | 103.94(5) | — | 98.29(5) | — | 104.41(5) | — | |
| 3 | P21/c | 2.3287(12) | 2.3337(13) | 2.2960(13) | 2.120(5) | 115.68(5) | 114.45(5) | 114.37(5) | 94.85(19) | — | 105.41(15) | — | 109.63(14) | — | |
AHACER 29 |
P21/c | 2.2684(10) | 2.2697(10) | 2.3286(11) | 2.070(3) | 121.04(4) | 112.79(4) | 89.84(3) | 109.87(8) | 109.87(8) | 116.26(8) | ||||
BENGAE 30 |
P![]() |
2.2901(5) | 2.2840(5) | 2.3257(5) | 2.1182(13) | 119.54(2) | 115.77(2) | 112.29(2) | 112.11(4) | 103.96(4) | 87.93(4) | ||||
BENGAE01 31 |
P![]() |
2.2921(4) | 2.2855(4) | 2.3272(6) | 2.1202(6) | — | 119.51(2) | 115.87(2) | 112.34(2) | 112.09(2) | 103.96(2) | 87.77(2) | |||
EFUWIM 32 |
P21/c | 2.3398(7) | 2.3071(6) | 2.3322(6) | 2.1504(19) | 121.70(2) | 113.24(2) | 113.80(2) | 98.21(5) | — | 109.78(6) | — | 95.11(6) | — | |
FAKLIM 33 |
P21/c | 2.312(2) | 2.337(2) | 2.339(2) | 2.174(5) | — | 114.14(7) | 121.37(7) | 113.42(7) | 109.53(13) | — | 95.45(13) | — | 97.93(13) | — |
The copper(I) center in the case of 1 is bound to two (m-MePh)3P ligands and one bidentate nitrate anion through two oxygen atoms, forming a CuP2O2 coordination sphere. The geometry approaches a slightly flattened tetrahedron with Cu–P bond lengths of approximately 2.21–2.22 Å and a longer Cu–O(NO3) bond of about 2.24 Å. The steric congestion arising from the m-methyl substituents is accommodated by widening the P–Cu–P angle to ca. 129°, ensuring minimal intraligand repulsion.
Three tris(m-tolyl)phosphine ligands (m-MePh)3P coordinate to the Cu(I) center in 2. The nitrate anion is bound in a monodentate manner through one oxygen atom. Consequently, the metal center adopts a pseudo-tetrahedral CuP3O coordination environment. The Cu–P bond lengths are in the range of 2.29–2.32 Å, in agreement with those typically observed in Cu(I)-tris(aryl)phosphine complexes. The nitrate group interacts more loosely with copper than in 1, indicating that the three bulky (m-MePh)3P ligands dominate the metal coordination environment and impose steric control over the geometry. The P–Cu–P angles in 2 (120.30(2)° (P1–Cu1–P2), 114.88(2)° (P3–Cu1–P1) and 111.76(2)° (P3–Cu1–P2)) are slightly wider/narrower (depending on actual values) than those of 1 (P2–Cu1–P1 = 129.29(5)°), reflecting the increased steric demand imposed by the three tris(m-tolyl)phosphine ligands around the Cu(I) center. This angular opening/compression is consistent with the more congested CuP3O environment in 2 and highlights the steric modulation exerted by the phosphine framework compared with the CuP2O2 tetrahedral core observed in 1.
Substitution of (m-MePh)3P3 with ((p-MePh)3P)3 in 3 results in a slightly more symmetric tetrahedral geometry CuP3O, due to the more extended and less sterically hindered para-methyl substituents. The Cu–P bonds (2.29–2.33 Å) are marginally longer than those in 1 and 2, reflecting reduced steric strain and slightly stronger metal–phosphorus bonding. The nitrate again binds weakly through one oxygen atom, without bridging between copper centers. The coordination environment around the copper(I) centre in complex 3 displays the expected pseudo-tetrahedral geometry, defined by three phosphine donors and one oxygen atom of the nitrate ligand. The P–Cu–P angles in 3 are slightly compressed relative to those of 2, reflecting the increased steric encumbrance imposed by the particular arrangement of the tris(aryl)phosphine ligands. This angular compression results in a more compact CuP3O tetrahedral core. Similarly, the P–Cu–O angles in 3 are marginally narrower compared to those observed in 2, consistent with the monodentate coordination of the nitrate oxygen and the steric crowding generated by the surrounding phosphine framework. Overall, the angular pattern in 3 indicates a slightly more distorted tetrahedral geometry than in 2, driven predominantly by the steric profile of the phosphine ligands rather than electronic factors.
A comparative analysis of the crystallographic data of complexes 1A and 1B with those of previously reported Cu(I)-bis(phosphine)-nitrate structures in CCDC highlights their distinct structural features and establishes their uniqueness within this coordination family (Table 1).23 Complexes 1A and 1B crystallize in the chiral space group Pca21, in contrast to their analogues (NITPPC01, NITPPC02, NITPPC20, YUYMIQ, and ZACZUY) (Table 1), which adopt centrosymmetric space groups (Table 1).23–28 This chirality is directly reflected in their shorter and more compact Cu–P bond distances (2.22–2.23 Å), which are consistently shorter than those observed in the remaining structures (2.23–2.27 Å). The Cu–O distances fall within the expected range for bidentate nitrate coordination but exhibit a slightly more asymmetric distribution in 1A/1B, consistent with a chiral perturbation of the CuP2O2 environment.
The P–Cu–P angles of 1A and 1B (129.3°–129.8°) lie between the most expanded values of the NITPPC series (130.9°–131.1°)24–26 and the more compressed angle observed in YUYMIQ (126.33°)27 (Table 1). More importantly, the P–Cu–O angles display a pronounced angular spread (104.6°–121.3°), significantly larger than the nearly symmetric angle pairs found in the centrosymmetric NITPPC complexes,24–26 where each P–Cu–O angle is mirrored by its inversion-related equivalent. This anisotropic angular distribution is a hallmark of the loss of inversion symmetry in 1A and 1B and directly reflects their intrinsic molecular chirality. Finally, the O–Cu–O angle is marginally wider in 1A/1B (58.6–58.9°) relative to the literature values (56.1–57.7°), indicating a slightly more open nitrate coordination, again attributable to the steric and geometric constraints imposed by the chiral phosphine arrangement. These observations demonstrate that 1A and 1B exhibit a uniquely distorted CuP2O2 tetrahedral core, distinct from all known Cu(I) bis(phosphine)nitrate complexes. Their shorter Cu–P distances, expanded and asymmetric P–Cu–O angles, and chiral space group clearly support their classification as the first structurally characterized chiral Cu(I) complexes bearing two phosphine ligands and a bidentate nitrate group.
The Cu(I) centre in complexes 2 and 3 adopts the expected pseudo-tetrahedral CuP3O coordination environment, and their metrical parameters fall within the range reported in CCDC for related CuP3O(NO3) species (AHACER, BENGAE, BENGAE01, EFUWIM, and FAKLIM)29–33 (Table 1). The Cu–P bond lengths in 2 (2.2963–2.3283 Å) and 3 (2.2960–2.3337 Å) are slightly longer than those observed for AHACER29 and the BENGAE/BENGAE01
30,31 pair, but remain shorter or comparable to the most elongated Cu–P distances found in EFUWIM32 and FAKLIM.33 The Cu–O distances in 2 (2.1182(17) Å) and 3 (2.120(5) Å) closely match those of the BENGAE30 structures and lie between the shortest value observed for AHACER (2.070(3) Å)29 and the more weakly bound nitrate ligands in EFUWIM32 and FAKLIM (up to 2.174(5) Å),33 indicating an intermediate Cu–O bond strength within the series.
The P–Cu–P angular pattern also reflects subtle but significant differences. In complex 2, the P–Cu–P angles [120.30(2), 114.88(2) and 111.76(2)°] show a moderate angular spread, like those observed in the BENGAE/BENGAE01 systems,30,31 whereas in 3 the three P–Cu–P angles [115.68(5), 114.45(5) and 114.37(5)°] are more homogeneous and cluster tightly around 115°, indicating a slightly more regular tetrahedral arrangement of the three phosphine donors. In contrast, AHACER29 displays a strongly compressed P–Cu–P angle of 89.84(3)°, while EFUWIM32 and FAKLIM33 exhibit more pronounced angular opening (P–Cu–P up to ca. 114–121°), pointing to a higher degree of distortion in those structures. The P–Cu–O angles in 2 (98.29–104.41°) are centred close to 100°, whereas in 3 they span a wider range [94.85(19)–109.63(14)°], placing complex 3 in an intermediate position between the relatively symmetric P–Cu–O sets of EFUWIM/FAKLIM32,33 and the more anisotropic distributions observed in AHACER29 and BENGAE.30,31 Overall, complexes 2 and 3 exhibit CuP3O cores that are less distorted than those of AHACER and some of the more crowded analogues, with 3 in particular showing one of the most regular P3 coordination environments within the examined Cu(I)-tris(phosphine)nitrate family.
The νas(NO3−) and νs(NO3−) vibrational bands are observed at 1431 (vs) and 1017 (vs) cm−1 in the case of copper(II) nitrate salt.38 The νs(NO3−) is shifted at 1020 (m) cm−1 in 1, at 1019 (m) cm−1 in 2 and at 1018 (m) cm−1 in 3.
The vas(C–P) and vs(C–P) in the spectrum of free (m-MePh)3P are found at 777, 693 (vs) cm−1 and at 446, 438 (vs) cm−1. The corresponding vas(C–P) and vs(C–P) in the spectrum of free (p-MePh)3P are observed at 707, 660 (m) cm−1 and at 513, 501 (vs) cm−1. These bands are observed at 780, 693 (s) cm−1 and at 455, 451 (m) cm−1 in the case of 1, at 779, 693 (s) cm−1 and at 455, 436 (s) cm−1 in the case of 2. The vas(C–P) and vs(C–P) in the case of 3 are found at 711, 658 (m) cm−1 and at 511, 496 (vs) cm−1.
280 (1), 14
072 (2) and 22
900 (3) cm−1 M−1, respectively, (Fig. S6–S8). The spectra of (m-MePh)3P and (p-MePh)3P in DMSO show absorption bands at 268 (ε = 11
183 cm−1 M−1) and 266 nm (ε = 9991 cm−1 M−1). [iii] 1H-NMR spectroscopy: Table 2 summarizes the resonance signals observed in the 1H-NMR spectra of complexes 1–3 in comparison with their free ligands. The aromatic protons (H[Caromatic]) of (m-MePh)3P exhibit an upfield shift upon coordination to the Cu(I) ion in complexes 1 and 2, whereas for the (H[Caromatic]) of (p-MePh)3P, a downfield shift is observed in 3. The o- and m-aromatic protons in complex 3 obviously “collapse”. This is because in para-substituted aryl rings, the aromatic protons form an AA′BB′ system (o and m sets). In the spectrum of 3, the chemical-shift separation between these two sets is small, and the resonances are further affected by second-order behavior and 31P–1H long-range coupling, leading to significant overlap. As a result, the o- and m-signals appear as a single merged multiplet at the resolution shown. The methyl protons of the tolylphosphines (H[m-CH3] or H[p-CH3]) display an upfield shift in complexes 1 and 2, while they remain unshifted in 3.
| Compound | H[Caromatic] (ppm) | H[m or p-CH3] (ppm) |
|---|---|---|
| (m-MePh)3P | 7.49–6.96 | 2.26 |
| 1A/1B | 7.27–7.01 | 2.13 |
| 2 | 7.29–7.01 | 2.13 |
| (p-MePh)3P | 7.22–7.08 | 2.31 |
| 3 | 7.19–7.13 | 2.32 |
| MCF-7 IC50 (μM) | Kb (×104) M−1 | Binding energy (DNA) (kcal mol−1) | LOX IC50 (μM) | Binding energy (LOX) (kcal mol−1) | Ref. | |
|---|---|---|---|---|---|---|
| a In this study, SalH2 = salicylic acid, tpp = triphenylphosphine, and tpSb = triphenylantimony. | ||||||
| 1A/1B | 3.6 ± 0.2 | 12.6 ± 0.9 | −8.04/−6.26 | 13.1 | −5.26/−4.68 | a |
| 2 | 4.1 ± 0.2 | 8.8 ± 0.8 | −3.35 | 26.4 | −2.12 | a |
| 3 | 4.1 ± 0.1 | 9.2 ± 0.2 | −2.92 | 28.9 | −2.20 | a |
| [Cu(SalH)(tpp)3] 1a | 2.4 ± 0.1 | 5.1 ± 0.8 | −2.84 | 8.7 ± 0.2 | −1.50 | 40 |
| [Cu(SalH)(tpp)3] 1b | 4.0 ± 0.3 | 10.5 ± 1.7 | −2.01 | 5.7 ± 0.6 | −0.68 | 40 |
| [Cu(tpSb)3Cl] | 11.1 ± 0.4 | 14.4 ± 1.1 | −3.85 | — | — | 18 |
| [Cu2(tpSb)4Br2] | 9.2 ± 0.5 | 14.2 ± 1.7 | −3.57 | — | — | 18 |
| [Cu2(tpSb)4I2] | 18.4 ± 1.4 | 12.0 ± 3.9 | −2.69 | — | — | 18 |
| Cisplatin | 5.5 ± 0.4 | — | 65.9 | 18 | ||
In the case of the titration of CT-DNA with 1–3, the percentage of hyperchromism at λmax = 258 nm recorded is 9.8% for 1, 8.7% for 2 and 9.5% for 3 with no shift in λmax (Fig. 3).
These results suggest that complexes 1–3 interact with CT-DNA primarily through a groove-binding mode rather than by hydrogen bond cleavage, since the hyperchromic effect is below 40%.14–20,40–42 The binding constant (Kb) of 1–3 with CT-DNA was determined by titrating the complex solutions with CT-DNA and monitoring the changes in absorbance in the UV-vis spectra (300–310 nm) as the CT-DNA concentration increased (Fig. 3). Kb values were obtained from the slope and intercept of the Wolfe–Shimer equation, based on the linear correlation of [DNA]/(εa − εf) vs. [DNA]14–20,40–42 (Fig. 3). The Kb values are (12.0 ± 0.9) × 104 M−1 (1), (8.8 ± 0.8) × 104 M−1 (2) and (9.2 ± 0.2) × 104 M−1 (3) suggesting mild interaction between the DNA binders and CT-DNA (Table 3).
The binding (Kapp) constants were calculated using eqn (4):14–20,40–42
| KEB[EB] = Kapp[drug], | (4) |
The linear plot of I0/Ix vs. the concentration of 1–3 leads to the equation from where the concentration of the drug at a 50% reduction of the fluorescence is derived (Fig. 4). I0 and Ix are the intensities of radiation emitted from the CT-DNA–EB complex in the absence and presence of 1–3. The calculated Kapp values are (4.7 ± 0.4) × 104 M−1, (4.9 ± 0.3) × 104 M−1 and (6.2 ± 0.2) × 104 M−1 for 1–3, respectively. The Kapp values are in the range between 104 and 105 M−1, suggesting a groove binding mode of 1–3 towards CT-DNA.14–20,40–42 In contrast, the Kapp value higher than 106 M−1 suggests an intercalation mode (e.g. ethidium bromide binds to DNA with an affinity of 107 M−1).14–20,40–42 This binding mode is also confirmed using the corresponding results from UV-vis spectroscopic studies.
Fig. 5 shows the comparison of the relative specific viscosity values, (η/η0)1/3, for the ratio r = [complex]/[DNA]. The DNA's solution viscosity remains unchanged to a significant extent upon increasing the concentration of 1–3, either by decreasing or increasing it, suggesting possible groove binding or electrostatic interactions with DNA.40–42 In order to ascertain the groove binding of the compounds towards DNA, the viscosity of their solutions is compared with the corresponding one of the minor groove binders or intercalators (such as minor groove binding agent Hoechst 33258 and intercalator EB (Fig. 5)). For DNA lengthening studies, the plot of (η/η0)1/3 versus r yields a slope close to 1 (φ = 45°) for a “classical” intercalator (such as EB).42,43 This can be explained by the fact that in B-form DNA, each base pair contributes approximately 3.4 Å to the helical axis. Upon intercalation, the agent inserts between two adjacent base pairs, forcing them apart and thereby extending the DNA helix by about 3.4 Å. Thus, each intercalation event corresponds to the addition of one more base-pair spacing. This elongation of the DNA double helix results in an increase of the solution's viscosity, which is a characteristic feature of the intercalative binding mode. Nevertheless, most classical intercalators (EB) typically yield slopes in the range of 0.5–1 (φ = 30°) in such plots (Fig. 5).42,43 Classical groove binders, on the other hand, such as Hoechst 33258, typically result in a slope of 0 (φ = −4°). For complexes 1–3, the linear correlation of (η/η0)1/3 versus r yielded φ values of 12°, 15°, and −22°, which are in closer agreement with the φ values typically observed for groove-binding agents (0° for groove binders in contrast to 45° of intercalators). These results are consistent with the groove-binding mode of interaction with DNA, as concluded for compounds 1–3 from UV-vis and fluorescence spectroscopic studies (Fig. 5).
The DNA melting temperature (Tm) is defined as the temperature at which 50% of the double-stranded DNA dissociates into single strands.40–42 The Tm value of CT-DNA is determined from the midpoint of the melting transition, which is obtained by plotting the relative absorbance (fss) as a function of temperature. The relative absorbance is defined as fss = (A − Amin)/(Amax − Amin), where A represents the absorbance of the CT-DNA–drug solution at a given temperature T, Amin is the minimum absorbance, and Amax is the maximum absorbance.40–42
Fig. 6 shows the DNA thermal denaturation curves in the absence and in the presence of 1–3. The Tm value for free CT-DNA is 59.5 ± 1.0 °C, while the Tm values in the presence of 1–3 are 55.0 ± 0.9 (1), 56.3 ± 0.4 (2) and 53.8 ± 0.4 (3) °C, respectively. The effect of 1–3 on the melting profile of CT-DNA (ΔTm) value is lower than 2 °C, suggesting either a groove or electrostatic interaction mode of 1–3 towards CT-DNA. Intercalators on the other hand, such as EB, cause a considerable increase of the Tm of DNA leading to higher ΔTm values (ΔTm = 13 °C for EB).40–42
![]() | ||
| Fig. 7 Predicted minor groove binding sites of complexes 1A (A), 1B (B), 2 (C) and 3 (D) on DNA (in silico analysis). | ||
In the case of 1A, the O1 atom of the nitrate group interacts with the C1 carbon atom of the DC21 nucleobase, located deep within the minor groove [d(O1⋯C(DC21)) = 3.169 Å], while the phenyl rings of the phosphine ligands remain relatively flexible (Fig. 7). However, in the case of 1B, the O6 atom of the nitrate group interacts with the N2 atom of the DG4 nucleobase, within the minor groove [d(O6⋯N(DG4)) = 2.919 Å] (Fig. 7). For complex 2, the O3 atom of the nitrate group interacts with the C1 atom of the DC23 nucleobase [d(O3⋯C1(DC23)) = 2.867 Å]. No significant interaction was detected in the case of 3 (Fig. 7).
Fig. 8 illustrates the relationship between LOX activity (A%) and the negative logarithm concentration (p
log(C)) of 1–3.
As a result, the inhibitory activity of 1–3 was evaluated toward the peroxidation of linoleic acid by LOX enzyme. The compounds 1–3 show significant reduction in LOX catalytic activity, giving IC50 values of 13.1 (1), 26.4 (2) and 28.9 (3) μM, respectively. These values demonstrate higher inhibitory activity compared to cisplatin (IC50 = 65.9 μM), 5-fold for 1, 2.5-fold for 2 and 2.3-fold for 3.
The docking data reveal a strong influence of chirality on the way Cu(I) complexes engage the LOX enzyme, both in terms of binding affinity and the nature of the amino-acid residues forming their binding pockets. The chiral complexes 1A and 1B bind significantly closer to the catalytic Fe center (Fe⋯Cu distances 27.8 Å and 25.3 Å, respectively) than the achiral complexes 2 and 3, which bind much more distantly (39.9–40.5 Å). This closeness correlates with clearly more favorable binding energies for 1A (−5.26 kcal mol−1) and 1B (−4.68 kcal mol−1) compared to 2 and 3 (−2.12 and −2.20 kcal mol−1), demonstrating that chirality enhances both complementarity and intermolecular stabilization within the LOX cavity. The binding energy of 1–3 towards LOX follows the order 1A < 1B < 3 < 2, which indicates the LOX inhibitory activity trend 1A > 1B > 3 > 2. The corresponding order of binding energy of 1–3 in DNA is determined as 1A < 1B < 2 < 3, suggesting that the order of affinity of 1–3 towards DNA is 1A > 1B > 2 > 3. Experimentally, the IC50 values of 1–3 against LOX follow the order 1A/1B < 2 < 3 (inhibitory activity of 1–3 against LOX 1A/1B > 2 > 3), while the corresponding Kb values for CT-DNA binding follow the trend 1A/1B > 3 > 2. The IC50 values against MCF-7 cells further show the order 1A/1B < 2 ≈ 3. Taken together, the computational and experimental results reveal a coherent structure–activity relationship, with complexes 1A and 1B consistently exhibiting the highest biological performance across all evaluated targets. Both docking energies and experimental IC50 values demonstrate that 1A/1B are the most potent LOX inhibitors and the strongest DNA binders, confirming the reliability and significance of these measurements.
The binding pockets of 1A and 1B are also broader, chemically richer, and more structurally complex than those sampled by 2 and 3. Complex 1A interacts with a highly cooperative binding environment composed of Asp228, Glu565, Val205, Phe212, Pro204, Lys561, and Tyr562, enabling simultaneous hydrogen-bonding, electrostatic, and hydrophobic contacts. Complex 1B, although docked into a different region, also engages a dense network of residues, Glu271, Asp275, Leu742, Ala426, Phe274, and Pro743, forming a well-defined hydrophobic-polar pocket that stabilizes binding. These multisite interactions arise from the asymmetric three-dimensional orientation of the chiral CuP2 core, which allows the phosphine aryl rings and the nitrate substituent to adopt conformations that fit more precisely into the grooves of the LOX surface.
In contrast, the achiral CuP3O complexes 2 and 3 engage significantly simpler and more diffuse binding pockets, reflecting poorer geometric complementarity. Complex 2 interacts mainly with Lys777, Glu153, His147, Tyr149, and Tyr632, with no deep insertion into a defined cavity, while complex 3 interacts only with Lys138, indicating a largely superficial association with the enzyme surface. These limited interactions correspond to their lower binding affinities, demonstrating that the expanded, sterically crowded CuP3O geometry reduces the ability of 2 and 3 to orient themselves effectively within LOX pockets.
Overall, the data clearly show that chirality and a compact CuP2O2 coordination framework enable 1A and 1B to access deeper, better-defined, and more chemically diverse binding pockets in LOX, leading to significantly stronger binding. In contrast, the achiral and more sterically overloaded CuP3O complexes (2, 3) are restricted to peripheral pockets, resulting in weaker stabilization and reduced biological activity. These findings highlight the role of stereochemistry and coordination compactness in directing selective molecular recognition within enzymatic environments.
In contrast, the achiral CuP3O complexes 2 and 3, which possess longer Cu–P bond distances and crystallize in the centrosymmetric P21/c space group, show significantly weaker interactions with DNA and LOX and display correspondingly reduced cytotoxic potency. The expanded, sterically overloaded CuP3O environment appears less capable of adopting the precise three-dimensional orientation required for efficient minor-groove binding or for interacting productively with the LOX binding pocket.
The excellent agreement between experimental data (IC50, Kb, viscosity, and ΔTm) and computational predictions (DNA/LOX docking energies and binding geometries) further confirms that the biological performance of these complexes is governed by a synergy of structural compactness, electronic polarization, and stereochemical organization. The chiral complexes 1A and 1B emerge as potent dual-target agents, simultaneously binding DNA and inhibiting LOX more effectively than both their achiral analogues and cisplatin.
Overall, this study establishes a clear structure–activity relationship in which chirality, shorter Cu–P bonding, and a well-defined CuP2O2 geometry collectively enhance biomolecular recognition and biological efficacy. These findings provide a compelling foundation for the development of next-generation chiral Cu(I)-based anticancer agents and set the stage for future investigations into enantioselective interactions, mechanistic pathways, and in vivo therapeutic potential of this promising class of metallotherapeutics.
1: colorless crystal, melting point: 73–75 °C; elemental analysis found: C: 68.55; H: 5.55; N: 1.64, Cu: 8.57%; calculated for C42H42CuNO3P2: C: 68.71; H: 5.76; N: 1.91; Cu: 8.66%; IR (cm−1): 3336 (br), 2918 (m), 1659 (s), 1591 (s), 1481 (m), 1444 (vs), 1400 (m), 1285 (vs), 1218 (m), 1172 (m), 1105 (s), 1027 (m), 995 (m), 891 (m), 780 (vs), 689 (vs), 545 (vs), 452 (vs); 1H-NMR (ppm) in DMSO-d6: 7.27–7.01 (m, Caromatic), 2.13 (s, m-CH3 group); UV-vis (DMSO): λ = 268 nm (log
ε = 4.18).
2: colorless crystal, melting point: 150–151 °C; elemental analysis found: C: 75.28; H: 6.73; N: 1.30; Cu: 6.25%; calculated for C63H63CuNO3P3: C: 75.10; H: 6.30; N: 1.39; Cu = 6.31%; IR (cm−1): 3384 (br), 1655 (m), 1591 (m), 1480 (m), 1443 (s), 1285 (vs), 1218 (m), 1172 (m), 1106 (s), 1022 (vs), 952 (s), 891 (m), 780 (vs), 694 (vs), 546 (vs), 452 (vs); 1H-NMR (ppm) in DMSO-d6: 7.29–7.01 (m, Caromatic), 2.13 (s, m-CH3 group); UV-vis (DMSO): λ = 268 nm (log
ε = 4.15).
3: colorless crystal, melting point: 169–170 °C; elemental analysis found: C: 77.28; H: 6.88; N: 2.45; Cu: 5.2%; calculated for C66H72CuN2O5P3: C: 77.17; H: 6.42; N: 2.48; Cu: 5.63%; IR (cm−1): 3433 (br), 2921 (m), 2114 (m), 1656 (m), 1597 (s), 1496 (s), 1441 (s), 1395 (m), 1285 (vs), 1186 (s), 1097 (vs), 1021 (s), 803 (vs), 709 (s), 643 (m), 628 (s), 612 (m), 511 (vs), 493 (vs), 433 (s); 1H-NMR (ppm) in DMSO-d6: 7.19–7.13 (m, Caromatic), 2.32 (s, p-CH3 group); UV-vis (DMSO): λ = 266 nm (log
ε = 4.36).
48 software suite. Non-H atoms were refined anisotropically, using weighted full-matrix least-squares on F2 while H-atoms were added using the riding model with SHELXL default parameters unless otherwise stated.
Single-crystal X-ray diffraction data of 3 were collected using a Rigaku R-AXIS SPIDER Image Plate diffractometer utilizing graphite monochromated Mo Kα radiation. Cell refinement, data reduction and empirical absorption corrections were applied using the CrystalClear program package.49 The crystal structure of 3 was solved by direct methods using SHELXS v.2013/1 and refined on F2 using full-matrix least squares techniques with SHELXL ver.2014/6.46,47 All non-hydrogen atoms were refined anisotropically whereas hydrogen atoms were admitted ideal positions and refined as riding on respective atoms.50
Crystallographic data (excluding structure factors) for the structures reported in this paper have been deposited with the Cambridge Crystallographic Data Centre as supplementary publication no. CCDC 2486986 (1), 2486987 (2) and 2490244 (3).
1: C42H42CuNO3P2, MW = 734.24, orthorhombic, space group Pca21, a = 20.5014(11), b = 10.9874(8), c = 33.168(2) Å, V = 7471.3(8) Å3, Z = 8, ρ(calc) = 1.306 g cm−3, μ = 0.710 mm−1, F(000) = 3072. 405
166 reflections measured, 18
584 unique (Rint = 0.125). The final R1 = 0.0512 (for 16
927 reflections with I > 2s(I)) and wR(F2) = 0.1223 (all data) S = 1.12.
2: C63H63CuNO3P3, MW = 1038.59, monoclinic, space group P21/c, a = 22.0146(7), b = 10.9051(4), c = 23.8047(7) Å, β = 112.006(1)°, V = 5298.5(3) Å3, Z = 4, ρ(calc) = 1.302 g cm−3, μ = 0.550 mm−1, F(000) = 2184. 154
228 reflections measured, 13
168 unique (Rint = 0.072). The final R1 = 0.0409 (for 10
692 reflections with I > 2s(I)) and wR(F2) = 0.1136 (all data) S = 1.04.
3: C66H72CuN2O5P3, MW = 1070.12, monoclinic, space group C2, a = 22.5150(13), b = 11.0851(5), c = 23.7237(12) Å, β = 96.669(2)°, V = 5880.9(5) Å3, Z = 4, ρ(calc) = 1.209 g cm−3, μ = 0.526 mm−1, F(000) = 2120. 22
994 reflections measured, 11
053 unique (Rint = 0.076). The final R1 = 0.0757 (for 7699 reflections with I > 2s(I)) and wR(F2) = 0.2192 (all data) S = 1.05.
Additional raw data (spectroscopic files, crystallographic datasets, and computational output) are available from the corresponding author upon reasonable request.
CCDC 2486986, 2486987 and 2490244 contain the supplementary crystallographic data for this paper.53a–c
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