Open Access Article
Yusuke Nambu
*ab,
Akihide Kuwabara
c,
Masahiro Kawamata
d,
Seira Morie,
Megumi Okazaki
e and
Kazuhiko Maeda
ef
aInstitute for Integrated Radiation and Nuclear Science, Kyoto University, Kumatori, Osaka 590-0494, Japan. E-mail: nambu.yusuke.7s@kyoto-u.ac.jp
bFOREST, Japan Science and Technology Agency, Kawaguchi, Saitama 332-0012, Japan
cNanostructures Research Laboratory, Japan Fine Ceramics Center, Nagoya, Aichi 456-8587, Japan
dDepartment of Physics, Tokyo Metropolitan University, Hachioji, Tokyo 156-0057, Japan
eDepartment of Chemistry, School of Science, Institute of Science Tokyo, Tokyo 152-8550, Japan
fResearch Center for Autonomous Systems Materialogy (ASMat), Institute of Science Tokyo, Kanagawa 226-8501, Japan
First published on 26th March 2026
The hydrogen positions and magnetic structure of goethite α-FeOOH, a key component of iron rust, were examined through neutron diffraction. All symmetry-allowed magnetic structures under the space group Pnma with the magnetic wavevector qm = (0, 0, 0) r.l.u. were analysed using irreducible representation and magnetic space group approaches. The magnetic moments aligned along the b-axis form antiferromagnetic spin arrangements, as reproduced by first-principles calculations. Accurately determining the hydrogen positions is crucial for understanding the mechanism of catalytic reduction of CO2 in α-FeOOH. These positions were precisely identified through diffraction and calculations, highlighting the effectiveness of using both methods for undeuterated compounds.
One of the most intriguing applications of hydrogen is in the field of high-pressure superconductivity,2 where compounds like hydrogen sulphide exhibit superconducting properties at remarkably high temperatures.3 These discoveries enable the development of new superconducting materials with significant technological implications.
Moreover, hydrogen's role in energy production, such as in fuel cells and hydrogen storage systems, highlights its potential for addressing global energy challenges.4–6 Its participation in catalytic reactions makes it indispensable for numerous industrial processes.7–9 Hydrogen's ubiquitous nature and unique chemical properties make it a cornerstone of both basic and applied research. It also plays a crucial role in photocatalytic processes, vital for sustainable energy conversion and environmental remediation.10 These applications underscore the diverse and transformative potential of hydrogen in advancing technology and sustainability.
Goethite (α-FeOOH) is one of the most widely occurring iron oxyhydroxide minerals and is also a main constituent of iron rust,11,12 and its crystal structure,13 magnetic properties14 and surface chemistry have been extensively investigated in mineralogy, solid-state chemistry, and environmental science. Recent studies have shown that α-FeOOH acts as a catalyst for the photochemical reduction of CO2 to HCOOH, in the presence of [Ru(bpy)3]2+ (bpy = 2,2′-bipyridine) as a redox photosensitiser.15 The rate of HCOOH generation and its selectivity with α-FeOOH are significantly higher than those observed with α-Fe2O3, indicating an important role for the hydroxyl (OH−) groups in α-FeOOH.16 Additionally, α-FeOOH exhibits superior CO2 adsorption capabilities compared to α-Fe2O3.15,17 Both experimental and theoretical studies over decades have investigated CO2 adsorption on α-FeOOH,17–19 highlighting the pivotal role of surface OH groups in this process. It is further suggested that these OH groups are involved in proton-coupled electron transfer reactions, which are essential for the reduction of CO2.20 More concretely, the reduction of CO2 progresses as electrons and protons react with the CO2 adsorbed on the catalyst surface. Therefore, OH groups with proton-dissociation capability on the catalyst surface may play a significant role. In this context, accurate bulk OH geometry and hydrogen-bond topology constrain the local proton environment and provide consistent boundary conditions for modelling surface terminations and proton mobility/transfer steps that may govern catalytic selectivity and rates. Therefore, improving confidence in the bulk H positions and hydrogen-bond geometry is valuable even when the catalytic reaction occurs at surfaces.
Precise determination of hydrogen atom positions within a compound is crucial for materials characterisation. Despite its widespread use in structural analysis, X-ray diffraction struggles to locate hydrogen atoms due to their low electron density, which renders them nearly invisible to X-ray scattering, resulting in incomplete structural information.
Neutron diffraction, on the other hand, is a powerful tool for determining hydrogen positions, overcoming the limitations of X-ray diffraction. Unlike X-rays, neutrons interact with atomic nuclei, making them highly sensitive to hydrogen. This sensitivity allows for precise mapping of hydrogen locations. Recent studies, including single-crystal work, show that accurate hydrogen positioning can be achieved without using polarised neutrons and/or deuteration. Techniques using unpolarised neutrons and light hydrogen provide reliable results, simplifying experimental procedures and broadening the applicability of neutron diffraction in various research fields.
Nuclear magnetic resonance is another tool for locating hydrogen,21 but it may be less suitable for precise structural refinements of inorganic compounds. Inorganic compound analysis can be challenging due to the influence of heavier atoms and their distribution in crystals. Despite advancements in experimental techniques, first-principles calculations remain essential for a comprehensive understanding of hydrogen in materials.22 These calculations offer detailed insights into electronic structures, bonding interactions, and dynamical properties that are not easily accessible through experiments alone.
In this study, we examine the hydrogen positions and magnetic structure of goethite α-FeOOH [structures schematically depicted in Fig. 1]. The previous study13 on α-FeOOH refined hydrogen positions using standard Rietveld analysis. However, ambiguity in the hydrogen locations persists when solely determined by neutron diffraction measurements. Here, neutron diffraction techniques were reapplied to a powder sample, and the magnetic structure was successfully refined using group theoretical analyses. We show that combining complementary first-principles calculations provides an excellent example of locating hydrogen positions in α-FeOOH.
First-principles calculations were performed using the projector augmented-wave method,25,26 as implemented in the VASP code.27–29 The exchange–correlation interactions of the electrons were treated within the framework of the PBEsol-type potential.30 The cutoff energy for the plane wave basis sets was set to 550 eV. The valence-electron configurations of the potentials were 3p63d64s2 for iron, 2s22p4 for oxygen, and 1s1 for hydrogen. All calculations were performed in a spin-polarised state with both ferromagnetic and antiferromagnetic configurations. The antiferromagnetic configurations were investigated in conventional unit cells and double-volume supercells of α-FeOOH. Symmetrically independent antiferromagnetic configurations were identified using the CLUPAN code.31 Three configurations were calculated in the conventional unit cell and 55 in the doubled-volume supercells.
The DFT+U approach32 was employed to take into account the strong correlation effects of the Fe 3d orbitals, with U set at 5.3 eV.33 The calculation cells of α-FeOOH were optimised using Γ-centered k-point sampling meshes. The k-point spacing was set to 0.4 Å−1, ensuring total energy convergence to 1 meV per atom against the k-points density in the Brillouin zone of the calculated cells. The crystal structures were fully relaxed until all residual forces on the atoms were smaller than 0.02 eV Å−1.
We then applied representation analysis to identify the magnetic structure at the lowest measured temperature. Given that all the magnetic reflections overlap with nuclear reflections, the magnetic wavevector is qm = (0, 0, 0) r.l.u. Basis vectors (BVs) of the irreducible representations (irreps) for the wavevector with the Kovalev notation36,37 are summarised in Table 1 alongside schematic drawings of magnetic structures corresponding to each BV. There are 12 BVs in total, each belonging to one of 8 distinct one-dimensional irreps. Each BV describes the relation of the moment direction of 4 atoms, either parallel or antiparallel, along one crystallographic axis. The ψ4 in Γ3, ψ7 in Γ5, and ψ11 in Γ7 represent ferromagnetic spin arrangements along the a, b, and c-axis, respectively, whereas the others describe antiferromagnetic spin arrangements.
We also summarise all possible magnetic space groups (MSGs). Allowed maximal MSGs for the space group Pnma with the wavevector (0, 0, 0) r.l.u. are 8 in total. These MSGs, along with the unified (UNI) symbols38 and corresponding irreps, are presented in Table 2. The 8 MSGs apparently have a one-to-one correspondence with the irreps.
| MSG | Fe positions | Magnetic moment | Corr. irrep |
|---|---|---|---|
| Pn′m′a′ (#62.449) | (x, 1/4, z|mx, 0, mz) (−x + 1/2, 3/4, z + 1/2|−mx, 0, mz) | (Mx, 0, Mz) | (ψ2 ⊕ ψ3) ∈ Γ2 |
| (−x, 3/4, −z|−mx, 0, −mz) (x + 1/2, 1/4, −z + 1/2|mx, 0, −mz) | |||
| Pn′ma′ (#62.448) | (x, 1/4, z|0, my, 0) (−x + 1/2, 3/4, z + 1/2|0, my, 0) | (0, My, 0) | ψ7 ∈ Γ5 |
| (−x, 3/4, −z|0, my, 0) (x + 1/2, 1/4, −z + 1/2|0, my, 0) | |||
| Pnm′a′ (#62.447) | (x, 1/4, z|mx, 0, mz) (−x + 1/2, 3/4, z + 1/2|mx, 0, −mz) | (Mx, 0, Mz) | (ψ4 ⊕ ψ5) ∈ Γ3 |
| (−x, 3/4, −z|mx, 0, mz) (x + 1/2, 1/4, −z + 1/2|mx, 0, −mz) | |||
| Pn′m′a (#62.446) | (x, 1/4, z|mx, 0, mz) (−x + 1/2, 3/4, z + 1/2|−mx, 0, mz) | (Mx, 0, Mz) | (ψ10 ⊕ ψ11) ∈ Γ7 |
| (−x, 3/4, −z|mx, 0, mz) (x + 1/2, 1/4, −z + 1/2|−mx, 0, mz) | |||
| Pnma′ (#62.445) | (x, 1/4, z|0, my, 0) (−x + 1/2, 3/4, z + 1/2|0, −my, 0) | (0, My, 0) | ψ12 ∈ Γ8 |
| (−x, 3/4, −z|0, −my, 0) (x + 1/2, 1/4, −z + 1/2|0, my, 0) | |||
| Pnm′a (#62.444) | (x, 1/4, z|mx, 0, mz) (−x + 1/2, 3/4, z + 1/2|mx, 0, −mz) | (Mx, 0, Mz) | (ψ8 ⊕ ψ9) ∈ Γ6 |
| (−x, 3/4, −z|−mx, 0, −mz) (x + 1/2, 1/4, −z + 1/2|−mx, 0, mz) | |||
| Pn′ma (#62.443) | (x, 1/4, z|0, my, 0) (−x + 1/2, 3/4, z + 1/2|0, my, 0) | (0, My, 0) | ψ6 ∈ Γ4 |
| (−x, 3/4, −z|0, −my, 0) (x + 1/2, 1/4, −z + 1/2|0, −my, 0) | |||
| Pnma.1 (#62.441) | (x, 1/4, z|0, my, 0) (−x + 1/2, 3/4, z + 1/2|0, −my, 0) | (0, My, 0) | ψ1 ∈ Γ1 |
| (−x, 3/4, −z|0, my, 0) (x + 1/2, 1/4, −z + 1/2|0, −my, 0) |
We evaluated all 8 possible MSGs by comparing the reliable factor Rmag from data collected at 64.8(1) K. The best fit was found to be Rmag = 8.53% with Pnma′ (#62.445), corresponding to ψ12 in Γ8. The second-best fit was 20.15% for Pnm′a (#62.444), which involves a combination of ψ8 and ψ9 within Γ6. All other MSGs resulted in Rmag values exceeding 25%. We anticipate that the transition at TN is of second order, and according to Landau's theory,39 only one irrep, i.e., MSG, can be involved. The magnetic structure at 64.8(1) K corresponding to the best fit is illustrated in Fig. 1(b), with the estimated moment being 3.64(4)μB per Fe3+ site. Magnetic moments aligned parallel to the b-axis form a simple antiferromagnetic structure, with the magnetic unit cell equivalent to the crystallographic unit cell. The magnetic moment size is traced as a function of temperature [Fig. 2(c)], with saturation nearly achieved at the lowest measured temperature. This explicit, group-theoretical, data-driven selection uniquely identifies Pnma′ (#62.445) from powder data and provides a reusable template for similar systems. To compare with previous work,13 we note that the magnetic structure of α-FeOOH was previously reported in the alternative Pbnm setting, with spins parallel to the c-axis. Under the axis transformation between the Pbnm and Pnma settings, this spin direction is equivalent to the b-axis moment direction obtained here. Thus, our refined magnetic structure is fully consistent with the previous neutron diffraction result.
In the paramagnetic phase of 430.1(9) K, diffraction patterns are well fit based on α-FeOOH with the space group Pnma. The refined crystal structure is consistent with the averaged structure obtained from single-crystal X-ray diffraction data.40 The standard Rietveld refinements converge and successfully estimate the OH (O2–H) distance as a function of temperature [Fig. 2(d)]. The distance is close to, yet slightly larger than 0.96 Å in water, and it remains within a 5% variation across the entire temperature range measured. No abrupt change or anomaly is observed that would indicate either a proton order–disorder transition or a symmetry change of the average crystal structure. In addition to the O2–H bond length, we evaluated the H⋯O1 distance, the O1⋯O2 donor–acceptor distance, and the O2–H⋯O1 angle as a function of temperature (Fig. S1) to visualise the evolution of the hydrogen-bond geometry relevant to surface proton transfer.
Although the hydrogen positions have been successfully determined, as also supported by the difference-Fourier map (Fig. S2), some concern may remain because an undeuterated (light hydrogen) sample was employed. The neutron-diffraction intensity I is proportional to the square of the absolute value of the structure factor, as formulated below,
Fig. 4 shows the calculated distribution of magnetisation density (Δρ↑↓) for α-FeOOH, determined using the most stable antiferromagnetic configuration from a series of total energy calculations. This antiferromagnetic state is 0.038 eV per atom, more stable than the ferromagnetic state. Δρ↑↓ is calculated from the charge densities of up-spin (ρ↑) and down-spin (ρ↓) using the equation,
| Δρ↑↓ = ρ↑ − ρ↓. |
As shown in Fig. 4, the spin configurations of Fe–Fe are antiferromagnetic along the [100] direction and ferromagnetic along the [010] direction, which is consistent with the refined magnetic structure.
The optimised lattice constants are summarised in Table 3, along with the refined nuclear and magnetic structures. The experimentally refined parameters in Table 3 are described within the MSG in accordance with the latest guidelines of the International Union of Crystallography,41,42 including the positions of nonmagnetic atoms. The lattice constants obtained from our calculations are a = 9.885, b = 3.010, and c = 4.542 Å. The relative differences between the computational lattice constants and the experimental findings at 64.8(1) K were below 1%. Using Debye-Grüneisen fits to the lattice parameters as a function of temperature (Fig. S3), we extrapolated the experimental cell to 0 K and obtained a = 9.93432 Å, b = 3.01191 Å, and c = 4.59270 Å, which are marginally closer to the calculated lattice constants than the 64.8(1) K values. The fractional atomic positions in the optimised α-FeOOH closely match the experimental results, as summarised in Table 3. The O2–H distance is computed to be 1.02253 Å compared to the experimentally refined value of 1.008(7) Å, within an accuracy of 1.5%. To quantify consistency at the level of hydrogen bonding—not only lattice constants—we evaluated the donor–acceptor geometry using the refined/optimised fractional coordinates and lattice parameters in Table 3. For 64.8(1) K neutron refinement, the geometry is H⋯O1 = 1.781(7) Å, O1⋯O2 = 2.734(4) Å, and ∠O2–H⋯O1 = 156.4(6)°. For the DFT+U-optimised structure, the corresponding values are H⋯O1 = 1.586 Å, O1⋯O2 = 2.704 Å, and ∠O2–H⋯O1 = 164.3°, giving the same donor–acceptor pairing and a nearly linear hydrogen bond arrangement.
| Experiment | Calculation | |
|---|---|---|
| Temperature | 64.8(1) K | |
| Parent space group | Pnma (#62) | |
| Magnetic wavevector | (0, 0, 0) r.l.u. | |
| Transformation from the parent basis | (a, b, c; 0, 0, 0) | |
| MSG symbol | BNS: Pnma′ (#62.445) | |
| OG: Pnma′ (#62.5.506) | ||
| UNI: Pnma′ (#62.445) | ||
| Transformation to the standard setting | (a, b, c; 0, 0, 0) | |
| Magnetic point group43 | mmm′ | |
| Unit cell parameters | a = 9.93455(3) Å | a = 9.88511 Å |
| b = 3.01209(8) Å | b = 3.01004 Å | |
| c = 4.59219(13) Å | c = 4.54221 Å | |
| MSG symmetry operations | x, y, z, + 1 {1|0,0,0} | |
| −x + 1/2, −y, z + 1/2, + 1 {2001|1/2, 0, 1/2} | ||
| −x + 1/2, y + 1/2, z + 1/2, + 1 {m100|1/2, 1/2, 1/2} | ||
| x, −y + 1/2, z, + 1 {m010|0, 1/2, 0} | ||
| MSG symmetry centering operations | x, y, z, + 1 {1|0, 0, 0} | |
| −x, −y, −z, −1 {−1′|0, 0, 0} | ||
| Positions of magnetic atoms | Fe (0.85271(19), 1/4, 0.04986(42)) | Fe (0.85715, 1/4, 0.06233) |
| Magnetic moments components | My = 3.64(4) μB | |
| Positions of nonmagnetic atoms | O1 (0.20146(34), 1/4, 0.70280(69)) | O1 (0.19457, 1/4, 0.67982) |
| O2 (0.05209(31), 1/4, 0.20266(70)) | O2 (0.05748, 1/4, 0.19500) | |
| H (0.08306(63), 1/4, 0.41172(138)) | H (0.09636, 1/4, 0.40360) | |
| Isotropic displacement parameters, Uiso (Å2) | Fe: 0.0040(4) | N/A |
| O1: 0.0013(6) | ||
| O2: 0.0028(6) | ||
| H: 0.0172(11) | ||
Surface slab models of α-FeOOH are commonly built from the bulk structure, and the initial protonation pattern of surface O sites is inherited from the bulk OH orientation and hydrogen-bond topology. If the bulk H position is poorly constrained, multiple plausible hydrogen-bond networks and surface hydroxyl configurations must be assumed, which can lead to different predicted adsorption geometries and proton-coupled electron transfer energetics for CO2 reduction. The present refinement provides a well-defined bulk reference (including temperature-dependent hydrogen-bond geometry) that can be used as a consistent starting point for reaction modelling and for assessing how defects or surface terminations perturb the proton environment.
Fig. 5 shows the calculated projected partial density of states (PDOS) for α-FeOOH. The valence band top is set to 0 eV on the horizontal axis. The band gap of antiferromagnetic α-FeOOH is calculated to be 2.16 eV. The regions around the valence band top and the conduction band bottom are composed of Fe(3d) and O(2p) orbitals. Unlike O1–4, O5–O8 [Fig. 4] are combined with a proton to form OH groups. The combinations of atoms forming OH ions are O6–H2, O7–H3, O5–H1, and O8–H4. The bonding states of H(1s)–O(2p) and H(1s)–O(2s) are present around −5 to −8 eV and −18 to −20 eV, respectively. The molecular orbitals of OH are located at deeper valence bands than the energy levels of the O(2p) states from the single oxide ions, O1–O4.
![]() | ||
| Fig. 5 Calculated partial density of states (PDOSs) of α-FeOOH. Atom labels correspond to those in Fig. 4. The energy level of the valence band top is set to be 0 eV in the horizontal axis. The hatched gray area indicates the band gap region. Positive and negative PDOSs correspond to up-spin and down-spin components, respectively. | ||
Given the nearly complete agreement between experimental and calculated data, we show that the complementary use of neutron diffraction on an undeuterated sample and first-principles calculations can effectively identify hydrogen positions. Due to the high symmetry of this particular compound, refinements were relatively straightforward. The results from both experiments and calculations were highly consistent, highlighting the efficacy of a parallel approach using neutrons and calculations. Deuteration may be necessary for compounds with more complex structures and numerous Wyckoff positions. Hydrogen positions in α-FeOOH have been successfully refined, providing the minimum information required to elucidate the mechanism of CO2 reduction and water oxidation. Future perspectives include excitation studies on hydrogen dynamics and in situ measurements under a CO2 atmosphere.
Supplementary information (SI) is available. See DOI: https://doi.org/10.1039/d5dt00217f.
CCDC 2535200–2535209 contain the supplementary crystallographic data for this paper.46a–j
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