Open Access Article
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Molecular organization in polar nematic phases: a combined FTIR spectroscopy and molecular simulation approach

Antoni Kocot*a, Bartosz Nikiela, Jakub Karczb and Przemysław Kulab
aInstitute of Materials Engineering, Faculty of Science and Technology, University of Silesia, Chorzów, Poland. E-mail: antoni.kocot@us.edu.pl
bInstitute of Chemistry, Faculty of Advanced Technologies and Chemistry, Military University of Technology, Warsaw, Poland

Received 6th January 2026 , Accepted 6th June 2026

First published on 15th June 2026


Abstract

The emergence of polar nematic phases, such as the ferroelectric (NF) and antiferroelectric (NX) phases, has opened new frontiers in soft matter science. However, the relationship between molecular structure, intermolecular interactions, and the resulting macroscopic order remains poorly understood. This work investigates the molecular organization in the polar nematic phases of the nJK (n = 1–5) homologous series using a combined approach of polarized Fourier-transform infrared (FTIR) spectroscopy, density functional theory (DFT) calculations, and atomistic molecular dynamics (MD) simulations. A central finding is the inadequacy of single-molecule DFT models to describe the system. While DFT accurately predicts vibrational band positions, it fails to replicate their experimental intensities, suggesting that intermolecular interactions are dominant. This is further corroborated by the anomalous temperature dependence of the average absorbance for parallel and perpendicular vibrations, which deviates significantly from simple density effects. Atomistic MD simulations of a multi-molecule system provide insight into this behavior, revealing the formation of locally ordered nanodomains driven by strong short-range correlations. Experimentally, we quantified the primary nematic order parameter (S), which follows a typical progression in the N phase but shows anomalous changes at the N–NX and NX–NF transitions, ultimately saturating at a high value of S ≈ 0.7 in the ferroelectric state. The difference between orthogonal absorbance components for perpendicular vibrations reveals a significant biaxiality order parameter (C) that increases upon cooling and approaches 0.6 in the NF phase. This study demonstrates that the unique properties of polar nematics are governed by specific molecular self-assembly and establishes phase biaxiality as a key feature of these systems.


I. Introduction

Polar liquid crystalline (LC) materials have become a subject of renewed scientific interest since they were found to exhibit novel polar nematic phases, such as the ferroelectric (NF) and antiferroelectric (NX) phases. Over a century after Max Born's original idea,1 experimental groups from the UK and Japan have announced pioneering discoveries in the field of polar nematics. The compounds are referred to as RM7342 and DIO3 and were shown to exhibit the NF phase4 in which the director does not possess inversion symmetry, and the phase is polar. The NF phase has huge application potential and underpinning this are properties including high polarisation values,2,3,5,6 strong non-linear optical response,7–11 large dielectric permittivities12–20 and switching at very low electric fields.2,3,21–26 Recently, the first example of a compound with an enantiotropic NF phase, based on the DIO molecule, was reported. Further modification of the chemical structure of the DIO molecule led to the discovery of a new chiral LC phase in which polar order coexists with the spontaneous formation of a helical superstructure from achiral molecules.11

As polar soft materials, phases like NTB, NSB, NS, and NF possess the potential to transform future technologies, for instance, in ultra-fast, energy-saving flexible displays, non-volatile memory, and supercapacitors. Consequently, the NF phase has become an extremely “hot” research topic, attracting leading teams from the US, EU, Japan, and China.

However, the self-organization mechanisms in these new nematic phases are still poorly understood. Our goal is to contribute to this research by developing mesoscopic and microscopic models that correlate experimental observations with molecular characteristics, local NF symmetry, and macroscopic properties. Current experiments suggest that the stabilization of the phase may be related to a strong softening of one of the Frank elastic constants in the adjacent conventional nematic (N) phase. This softening appears to depend on molecular shape through packing entropy and the correlation of molecular dipoles.

We aim to investigate this hypothesis, particularly to understand why highly fluorinated molecules with strong dipole moments, such as nJK, favour a ferroelectric order over the energetically more favourable anti-parallel correlations in the liquid state. The emerging field of ferroelectric nematic liquid crystals marks an exciting stage in soft matter science. The fluid nature of the NF phase presents unique challenges and opportunities. Unlike in solid ferroelectrics, where polarization is anchored to the crystal lattice, the polarization vector in a fluid nematic can be continuously deformed, for example, through surface patterning27,28 or applied electromagnetic fields. This offers potential for superior spatiotemporal control.

To elucidate the relationship between molecular structure and macroscopic properties in these polar nematic phases, vibrational spectroscopy is a powerful tool. For an anisotropic system, it can provide information about the orientational order of individual functional groups and their specific interactions. In this work, we use polarized Fourier-transform infrared (FTIR) spectroscopy to study the molecular orientational arrangement in the nematic phases (N, NX, NF,) of material series: nJK (where n = 1–5).

II. Materials and methods

2.1. Materials

The liquid crystal samples, nJK (n = 1–5), were synthesized by the Liquid Crystal Group at the Military University of Technology. Their phase transition temperatures and enthalpies (in brackets, kJ mol−1) are as follows:15

1JK: Iso 107.4 °C [4.47] NF 78.4 °C [23.67] Cr.

2JK: Iso 92.4 °C [2.86] NF 67.6 °C [19.33] Cr1 55.0 °C [1.39] Cr2.

3JK: Iso 115.7 °C [0.69] N 90.9 °C [0.01] NX 86.8 °C [0.38] NF 65.9 °C [20.16] Cr.

4JK: Iso 113.0 °C [0.55] N 77.0 °C [0.007] NX 68.7 °C [0.32] NF 59.1 °C [21.30] Cr.

5JK: Iso 115.5 °C [0.5] N [17.58] 59.5 °C Cr.

2.2. Sample preparation and alignment

Samples for IR studies were prepared in cells made from two optically polished zinc selenide (ZnSe) windows. To achieve homogeneous planar alignment, the inner surfaces of the windows were spin-coated with the commercial polymer aligning agent SE-130 (Nissan Chemical Industries, Ltd). The windows were assembled with the rubbing directions parallel to each other. Mylar foil was used as a spacer, and the cell thickness was determined to be between 5.0 and 8.0 µm by analyzing interference fringes with an Avaspec-2048 spectrometer. The cells were filled by capillary action in the nematic phase, approximately 5 K below the transition to the isotropic phase. The quality of the alignment was confirmed using an Olympus BX56 polarizing microscope.

2.3. FTIR spectroscopy

Infrared absorbance measurements were carried out using a Bruker INVENIO FTIR spectrometer equipped with a Hyperion II infrared microscope. An IR-KRS5 grid polarizer was used to polarize the IR beam. Spectra were recorded in the 500–4000 cm−1 range with a resolution of 2 cm−1. To improve the signal-to-noise ratio, 32 scans were averaged for each measurement. The sample temperature was controlled by a PID controller with an accuracy of ±0.002 K, and measurements were performed during slow cooling and heating cycles at a rate of 0.5 K min−1.

2.4. Theoretical framework and order parameter calculation

For an anisotropic system, the IR absorbance of the ith vibrational mode21 is proportional to the square of the derivative of the system's dipole moment with respect to the normal coordinate, Qi:
 
image file: d6cp00046k-t1.tif(1)
where N is the number of molecules per unit volume, μ is the molecule dipole moment, and Qi is the normal coordinate corresponding to the ith mode.

The absorbance components measured in the laboratory frame (X, Y, Z) are related to the molecular orientational order parameters22,23 by the following equations:

 
image file: d6cp00046k-t2.tif(2)
where A0 = (AX + AY + AZ)/3 is the average absorbance. β and φ are the polar and azimuthal angles of the transition dipole moment in the molecular frame, respectively. S and D are the long molecular axis orientational and molecular biaxiality order parameters, while P and C describe the phase biaxiality.

2.5. Computational methods

To support the interpretation of experimental spectra, density functional theory (DFT) calculations and atomistic molecular dynamics (MD) simulations were performed. DFT was used to analyze molecular conformations (Fig. 1), determine rotational energy barriers, and calculate vibrational spectra for isolated molecules.24 MD simulations of a system containing 576 molecules of 3JK (Scheme S1) were used to investigate the influence of the local environment and intermolecular interactions on the system's properties, with a primary qualitative focus on molecular packing and orientational ordering processes. Molecular dynamics simulations were performed using GROMACS 2024.3,27 compiled with EasyBuild 4.9.4 and linked against PLUMED 2.9.2, on the ARES supercomputer at AGH Cyfronet, Kraków.
image file: d6cp00046k-f1.tif
Fig. 1 General structure of investigated materials with its electrostatic isopotential surface, highlighting the charge distribution along the molecule.

Intermolecular interactions were described using a modified version of the General Amber Force Field (GAFF).29 To better reproduce the conformational flexibility of the liquid-crystalline molecule, dihedral potentials for key torsions were refined following the Liquid Crystal Force Field (LCFF) methodology introduced by Wilson et al.25 Specifically, while the validated LCFF Ryckaert–Bellemans parameters were adopted for the flexible alkyl tails, custom torsional potentials were explicitly derived for the unique conjugated linkages within the mesogenic core (e.g., ester and ether bridges). This was achieved by performing relaxed Potential Energy Surface (PES) scans at the B3LYP/6-311+G(d,p) GD3BJ level of theory (Fig. S1). To isolate the pure torsional energy, the classical molecular mechanics background was subtracted from the quantum mechanical profiles, and the resulting target energies were fitted to the Ryckaert–Bellemans polynomial function (Tables S1 and S2). Molecular topologies were generated with the ACPYPE server.30 Atomic partial charges were derived from the electrostatic potential (ESP) using the Merz–Kollman (MK) scheme, as implemented in Gaussian 16.24 These quantum-chemically derived charges were used directly without empirical rescaling to provide a more accurate representation of the molecule's specific electronic distribution.

The simulation system consisted of 576 molecules, arranged in an initial nematic order as an apolar 1[thin space (1/6-em)]:[thin space (1/6-em)]1 mixture of molecules aligned along +x and −x.28 To fully capture high-frequency intramolecular vibrations, no bond length constraints were applied (constraints = none), and the equations of motion were integrated with a time step of 1 fs (0.001 ps). The initial configuration was relaxed for 100 ns at a starting temperature of 340 K, leading to an equilibrated density of approximately 1.3 g cm−3. Subsequently, the system was heated in a stepwise manner with a temperature increment of 5 K. All simulations were carried out under periodic boundary conditions in all three spatial dimensions. Temperature control was achieved using a velocity-rescale thermostat,26 while pressure was maintained at 1 bar using an anisotropic Parrinello–Rahman barostat,31 allowing independent fluctuations of the simulation box dimensions. Long-range electrostatic interactions were treated using the Particle Mesh Ewald (PME) method34 with a real-space cut-off of 1.2 nm. The same cut-off distance was applied to van der Waals interactions.

The influence of temperature on the structural properties of the system was investigated in the range 340–420 K. For each temperature step, the system was equilibrated for 100 ns, followed by an additional 300 ns production run for data collection. The achievement of equilibrium prior to the production runs was verified by confirming that thermodynamic observables (potential energy, temperature, and mass density) had reached stable plateau values without long-term drift. Furthermore, structural convergence was verified by monitoring the time evolution of the orientational order parameters P2 and P1. While it is acknowledged that full translational diffusion in low-temperature, highly ordered phases (e.g., the NF phase) is exceptionally slow, the 100 ns timescale proved fully sufficient to achieve stable orientational ordering for our qualitative analysis.

The primary objective of the simulations was to analyze the temperature dependence of these orientational order parameters. The analysis was performed using a custom Python script utilizing the MDAnalysis library.32,33 The nematic order parameter, P2, was determined by diagonalizing the Saupe ordering tensor, Q, constructed from the molecular long axes (defined as the principal axis of the smallest moment of inertia). The phase director, n, corresponds to the principal eigenvector of Q. The polar order parameter P1 was calculated as the ensemble average of the projection of the normalized molecular dipole moment vectors onto the phase director, n. This comprehensive analysis enabled the characterization of changes in the degree of molecular ordering as a function of temperature.

III. Results and discussion

3.1. Vibrational band assignment and challenges of DFT modeling

The complex structure of the studied molecules necessitates a detailed analysis of their possible conformations. DFT calculations were performed to identify low-energy conformers and simulate their corresponding IR spectra. Several energetically stable conformations were found, differing mainly by the torsional angles (φ1φ5) in the molecular core. The energy barriers between these conformers are comparable to the thermal energy (kT), suggesting that multiple conformations coexist in the condensed phases (Fig. 2).
image file: d6cp00046k-f2.tif
Fig. 2 (a) Definition of the investigated dihedral angles of the 3JK molecule. (b) The calculated potential energy functions for the torsional motion of the 3JK molecule relative to the minimum value; black solid line—ϕ1, red solid line—ϕ2, blue solid line—ϕ3, green solid line—ϕ4, violet solid line—ϕ5.

A comparison of the calculated spectra with experimental data reveals a significant challenge (Fig. 3). While DFT simulations can accurately predict the positions of the main vibrational bands, they fail to reproduce their relative intensities.


image file: d6cp00046k-f3.tif
Fig. 3 (a) The comparison of the experimental spectrum (332 K) with the theoretical spectra (B3-LYP/6-311G+(d,p)) for the 3JK molecule. Top curve—DFT simulated spectra of single molecule – red solid line, middle curve—experimental spectra—black solid line, bottom curve—DFT calculated spectra of single molecule in the solvent (eps = 250)—blue solid line. (b) Temperature dependence of the average absorbance for parallel and perpendicular vibrations.

Specifically, for isolated molecules, the calculated intensities of parallel bands (vibrations with transition dipoles aligned with the long molecular axis) are much higher than observed experimentally, while the intensities of perpendicular bands are lower. This discrepancy points to the crucial role of the intermolecular environment, which is neglected in calculations for a single molecule.

Attempts were made to account for the environment by modeling the molecule in a solvent with high dielectric permittivity (ε = 30 ÷ 300), which corresponds to the permittivity in the nematic range. This improved the intensity ratios but worsened the agreement of band positions and spectral shapes. This simplistic approach fails to capture the anisotropic nature of the liquid crystalline environment.

3.2. Role of intermolecular interactions and local ordering

To more realistically model the influence of the environment, we performed atomistic MD simulations for a system of 576 3JK molecules. Visualizations of the simulation snapshots reveal the formation of small, locally ordered nanodomains with correlated molecular orientations. These domains grow in size as the temperature is lowered (Fig. 4b). They show intrinsic relaxor-like nature in polar nematic LC.28
image file: d6cp00046k-f4.tif
Fig. 4 (a) Temperature dependence of Kirkwood coefficient, g, for 3JK, determined experimentally from dielectric spectroscopy: no biasing—black-solid line, with biasing 3 V-red-solid line, and (b) relaxor-like nature in polar nematic LC.28

The long-range dipole–dipole interaction can be described by an anisotropic Kirkwood coefficient, g, (Fig. 4), which is a measure of how the dielectric strength increases with respect to the system defined as the corresponding dipole correlation functions G(r).

 
image file: d6cp00046k-t3.tif(3)

In MD, the local Kirkwood correlation factor, g, is calculated according to the classical definition from dielectric theory:

 
image file: d6cp00046k-t4.tif(4)
where [small mu, Greek, vector] is the dipole moment vector of the ith molecule, N is the number of molecules in the group, and 〈μ2〉 is the mean square value of the dipole moment magnitude in this group.

To provide clearer spatial evidence of domains with opposite polar sense, we have performed the requested analyses and added them to the manuscript and SI:

• Images of the MD trajectory: we have included 3D visual renders of the MD trajectory (Fig. 5a). By coloring the molecules based on their projection along the local director axis, the presence of distinct nanodomains of opposite polar sense (e.g., red vs. blue regions) can be observed.

• Domain growth vs. simulation time: we have generated 2D spatial polarization maps (heatmaps) tracking the evolution of the domains across the simulation timeline (early, intermediate, and late stages). These maps show that the polar domains grow, consolidate, and stabilize over time, indicating they are a thermodynamic feature of the phase rather than a transient artifact of the initial conditions (Fig. S3).


image file: d6cp00046k-f5.tif
Fig. 5 (a) 3D visualization of the molecular arrangement in the polar nematic phase at 370 K. By coloring the molecules based on their projection along the local director axis, the presence of distinct nanodomains of opposite polar sense (e.g., red vs. blue regions) separated by clear domain walls is visually undeniable. (b) Distance-dependent polar spatial correlation function, g1(r).

• Spatial correlation of P1: we calculated the distance-dependent polar spatial correlation function, g1(r). As shown in Fig. 5b, g1(r) exhibits a positive correlation at short distances (parallel alignment within a domain) but systematically decays and crosses zero, reaching negative values at intermolecular distances of approximately 1.5 nm. This negative correlation provides quantitative evidence that molecules at this distance possess an opposite polar sense, supporting the visual and mapping data of the nanodomain.

This observation suggests that specific intermolecular interactions, rather than just a mean-field dielectric effect, are responsible for the observed spectral features.27,28,35 The strong coupling between vibrations of neighboring molecules modifies the transition dipole moments, leading to the observed average intensity changes. For a given band, the average absorbance (A0) should be proportional to the density. However, experimentally (Fig. 3b), A0 drops significantly at the transition from isotropic to N phase and remains below extrapolated predictions with decreasing temperature. In the NF phase intensities of parallel bands increase substantially but decrease for perpendicular bands. In fact, dielectric spectroscopy also shows that self-assembling gradually grows already in the nematic phase. This anomalous behavior, previously observed in the N–NTB transition,33–37 confirms that specific molecular self-assembly and dipole–dipole correlations are dominant factors.39,40

To investigate the influence of neighboring molecules on the IR spectrum within a more realistic environment,38–40 we performed atomistic molecular dynamics (MD) simulations of 3JK molecules. Typical snapshots of the domains were selected at a temperature of 360 K, and DFT optimizations were carried out for a configuration consisting of five molecules. The IR spectrum calculated for this system (Fig. 6) shows significantly better agreement with the experimental spectrum.


image file: d6cp00046k-f6.tif
Fig. 6 (a) The comparison of the DFT simulated spectra of the 3JK molecule (B3-LYP/6-311G+(d,p)) in the local molecular environment (for representative domain) with experimental spectrum (332 K): DFT simulated spectra of 3JK molecule as a result of vibrations coupling—blue solid line, experimental spectra—black dash line (b) molecules arrangement in the domain—top view, (c) side view of the molecular arrangements with electrostatic iso-potential surface. Please note the parallel molecular orientation and relative shift with respect to each other along the long axis.

3.3. Orientational order parameters

The primary nematic order parameter, S, was determined from the dichroism of several parallel vibrational bands (e.g., phenyl stretching at 1080, 1260, and 1525 cm−1).

Fig. 7 shows the temperature dependence of S for the nJK series. In the conventional nematic (N) phase, S exhibits a typical temperature dependence, which can be fitted with a power law with a critical exponent of 0.205 ± 0.005. These are rather typical as for other system DIO-like molecules.7,11 Anomalous departures from this behavior are observed at the N–NX and NX–NF phase transitions. Upon entering the NF phase, S reaches a high value of approximately 0.7 and remains nearly constant for 1JK and 2JK.


image file: d6cp00046k-f7.tif
Fig. 7 Temperature dependence of S-order parameters calculated for all nJK series, determined from 1525 cm−1 band absorbance. Symbols image file: d6cp00046k-u1.tif, image file: d6cp00046k-u2.tif, image file: d6cp00046k-u3.tif, image file: d6cp00046k-u4.tif, image file: d6cp00046k-u5.tif are for n = 1, 2, 3, 4 and 5, respectively. Fitting the power law eqn to the data 5JK.

We believe that the orientational order parameter depends mainly on the local molecular arrangement. Experimental results do not show significant changes at the phase transitions (N, NX, and NF) within the nematic phase range, unlike other quantities such as permittivity or polarization. The overall temperature behaviors of the orientational order parameters in the range of nematic subphases are mainly determined by the temperature difference TNIT. Typical behavior is shown for the 5JK molecule, that have only a nematic phase, the S-parameter is changing from 0.3 to 0.72 in the nematic phase as is usual for the majority of nematic LC. For 3JK and 4JK, in the nematic phase, S parameters follow a similar trend to that for 5JK, but decline slightly on entering NX, and NF probably due to different packing, higher molecular flexibility and escaping from uniform alignment. The Iso–NF (isotropic to ferroelectric nematic) phase transition for 1JK and 2JK homologues is a first-order phase transition characterized by a discontinuous, abrupt change in the order parameter. A defining feature of this transition is a discontinuous jump in the order parameter S at the transition temperature (TC).41 Unlike the conventional isotropic–nematic (I–N) transition, which is usually only weakly first-order, the direct transition to the ferroelectric nematic (NF) phase involves a significant jump in both orientational order S and electric polarization P.

The order parameters were calculated using a custom Python script utilizing the MD Analysis library. The nematic order parameter, P2, was determined by diagonalizing the Saupe ordering tensor, Q, constructed from the molecular long axes (defined as the principal axis of the smallest moment of inertia). The phase director, n, corresponds to the principal eigenvector of Q. The polar order parameter P1 was calculated as the ensemble average of the projection of the normalized molecular dipole moment vectors onto the phase director, n. We have significantly expanded the relevant paragraph in the Methods section to provide these mathematical details.

These results are in qualitative agreement with the predictions from our atomistic simulations for 3JK (Fig. S2). Ferroelectric ordering was found to be present at 340 K in the simulation system 3JK. As a result of applying the field of 0.05 V nm−1, the polar order parameter approach P1 = 0.82.

3.4. Phase biaxiality

A key finding of this study is the significant difference observed between the AX and AY absorbance components for perpendicular vibrations (e.g., at 870 cm−1 and 1760 cm−1).

According to the theoretical framework, the difference (AYAX) is a direct experimental signature of phase biaxiality, related to the parameters P and C. We define an “apparent biaxiality” parameter as (AYAX)/A0. Following eqn (2) the apparent biaxiality can be related to Saupe order parameters:

 
(AYAX)/A0 = P(3[thin space (1/6-em)]sin2[thin space (1/6-em)]β − 2) + C[thin space (1/6-em)]sin2[thin space (1/6-em)]β[thin space (1/6-em)]cos[thin space (1/6-em)]2ϕ (5)

Fig. 8 shows that this apparent biaxiality is non-zero and increases significantly upon cooling through the nematic range, reaching values up to 0.4 in the NF phase. Since the perpendicular components of parallel vibrations do not show a significant difference (AXAY), we attribute this biaxiality primarily to the ordering of the secondary director (parameter C), in the second part in eqn (5). Application of a 1T magnetic field further increases the measured biaxiality, confirming that it is related to the macroscopic alignment of the secondary director (Fig. 8).


image file: d6cp00046k-f8.tif
Fig. 8 Temperature dependence of S-order parameters for 3JK, image file: d6cp00046k-u6.tif, and biaxiality of the phase (AYAX)/A0 calculated for 3JK, determined from 1760 cm−1 band absorbance without: image file: d6cp00046k-u7.tif, and in the magnetic field (B = 1 T), image file: d6cp00046k-u8.tif. Molecular dynamic prediction for S parameter, S: image file: d6cp00046k-u9.tif, and phase biaxiality image file: d6cp00046k-u10.tif. Please note, the upper scale for MD results is shifted by 15 K with respect to the bottom one.

After accounting for the angular factors in eqn (5), the real biaxiality order parameter (C) is expected to be probably higher than (AYAX)/A0, indicating a significant biaxial ordering. The experimentally derived apparent biaxiality, (AYAX)/A0 has two terms, eqn (5), which are difficult to separate. It has to be noted that biaxiality values, the C-parameters, from atomistic simulations are substantially lower than the experimental apparent one, (AYAX)/A0 thus the difference can be due to the first term in eqn (5) which may also have a significant contribution due to the splay deformations. We believe that biaxiality has a significant impact on the electrical response of the system.

For a complex molecule like 3JK, several key interactions are typically neglected or oversimplified in classical MD simulations. In the case of 3JK, accurately modeling short-range interactions is crucial. While standard MD captures dipole–dipole interactions, it may overlook molecular polarizability and the specific electronic distribution of the groups. The most significant limitation for 3JK in standard MD is the lack of polarizability. Since the polar DIO phase involves massive local internal fields that “pump” the molecular dipoles, a non-polarizable model may yield an orientational order parameter that is lower than what you observe in IR or birefringence experiments.

What is omitted:

The redistribution of the electron cloud under the influence of the intense local electric fields found in the ferroelectric-like (DIO) phase: for a highly fluorinated molecule like 3JK, the induced dipoles can significantly strengthen intermolecular coupling, a factor that the classical model cannot see. The subtle quantum mechanical effects of π orbital overlapping: these effects dictate whether the aromatic rings align “face-to-face” or “edge-to-face,” which is critical for determining the orientational order parameter in nematic phases.

While fluorine is a weak halogen bond donor, in such highly substituted systems, MD typically misses the anisotropy of these interactions, which helps stabilize local molecular packing. The coupling between the molecule's conformational state and the local dielectric environment. In reality, a change in conformation alters the molecular dipole moment. In dielectric spectroscopy, this is a primary signal, but in fixed-charge MD, this effect is often significantly underestimated.

IV. Conclusions

In this work, we employed polarized FTIR spectroscopy, complemented by DFT calculations and atomistic simulations, to investigate the molecular organization in polar nematic phases of the nJK homologous series. Our key findings are as follows:

1. Intermolecular interactions are dominant: simple DFT models of isolated molecules are insufficient to describe the vibrational spectra of these materials. The anomalous temperature dependence of the average absorbance indicates that specific short-range molecular correlations, rather than mean-field effects, govern the system's properties. Atomistic simulations support this conclusion by revealing the formation of locally ordered nanodomains.

2. Quantification of orientational order: the primary order parameter, S, shows distinct behavior across the N, NX, and NF phases, reaching a high saturation value of S ≈ 0.7 in the ferroelectric state.

3. Evidence of the phase biaxiality: a significant difference between the AX and AY absorbance components for perpendicular vibrations was observed, providing direct evidence of macroscopic phase biaxiality. This biaxiality increases upon cooling and is particularly pronounced in the NF phase, where the secondary order parameter C approaches value 0.6.

This combined experimental and theoretical approach highlights the complex interplay between molecular structure, local self-assembly, and the resulting macroscopic polar order in this fascinating new class of liquid crystals.

Conflicts of interest

There are no conflicts to declare.

Data availability

The data will be archived in the digital archiving system of the University of Silesia (ZENODO) and the Repository of the Jagiellonian University (RUJ). The ZENODO University of Silesia Repository will allow storing and sharing of full publications, while RUJ will allow storing of raw research data. The Jagiellonian University repository meets the FAIR. Data principles, which in its development mean: Findable, Accessible, Interoperable, Reusable. All data are openly available at the end of this project. The raw data, as a result of direct measurements, will include FTIR spectra, which will be converted to the “txt” or “csv” file as a universal framework and will be deposited in the RUJ database. Raw data from computer simulations will be converted to the “txt” or “log” text files and will also be deposited in RUJ. https://zenodo.org/ https://ruj.uj.edu.pl/xmlui/. The data will be made publicly available when research results are published and/or any intellectual property of the site generated under this research project is sufficiently protected. All data stored in the RUJ will be assigned a DOI and accompanied by the following metadata: project name, details of the depositor and project manager, and the project duration. ZENODO will be the main platform for data storage. Data provided in the repository will fulfill FAIR standards requirements and will be categorized and labeled according to the standard file formats. There is no time limit for data storage at ZENODO. Digital Commons and RUJ/ZENODO databases are fully public and searchable via any web browser. The data will be stored for the duration of the project.

Supplementary information (SI) is available. See DOI: https://doi.org/10.1039/d6cp00046k.

Acknowledgements

Authors J. K., B. N. and A. K. thank the National Science Centre for funding through the Grant No. 2022/45/B/ST5/04093 (J. K., B. N. and A. K.) and 2024/53/B/ST5/03275 (P. K.). We gratefully acknowledge the Polish high-performance computing infrastructure PLGrid (HPC Center: ACK Cyfronet AGH) for providing computer facilities and support within the computational grants no. PLG/2025/018039 and PLG/2026/019191.

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