Randa Abd
Almoaeen
,
Mickey
Vinodh
,
Fatemeh H.
Alipour
and
Talal F.
Al-Azemi
*
Chemistry Department, Kuwait University, P.O. Box 5969, Safat 13060, Kuwait. E-mail: t.alalzeme@ku.edu.kw
First published on 17th January 2026
A newly synthesized [2]naphthyl-extended pillar[6]arene was crystallized from a range of solvent systems to examine the influence of crystallization conditions on its structural and supramolecular behavior. Single-crystal X-ray diffraction revealed solvent-dependent packing modes, giving rise to distinct assemblies including inclusion complexes, and supramolecular polymers driven by solvent guest molecules. The variations are governed by solvent–host interactions, emphasizing the crucial role of solvents in directing supramolecular assembly in the solid state. The resulting supramolecular assemblies were fully characterized using single-crystal X-ray diffraction and Hirshfeld surface analysis.
Embedding larger π-conjugated units, such as naphthalene, anthracene, pyrene, perylene, or other polycyclic aromatic hydrocarbons, into the pillararene framework is expected to produce π-extended macrocycles with more electron-rich cavities and enhanced π–π stacking, CH–π interactions, and donor–acceptor complexation.24–36 However, the synthesis and study of such PAH-based π-extended pillararenes remain very limited because of significant synthetic challenges. In this work, we report the synthesis and structural investigation of a naphthalene-embedded extended-pillararene in which two naphthalene units are introduced into the macrocyclic framework alongside four methoxy-substituted phenyl rings, generating an eight-membered, π-extended pillar[6]arene. The presence of electron-rich naphthalene units is expected to confer distinct host–guest binding features, as well as valuable photophysical properties, such as enhanced fluorescence, offering potential for future development in chemical sensing and bioimaging applications.37–39
As part of our ongoing efforts to explore macrocyclic arenes with diverse cavity depth, size, and shape, we have recently reported the synthesis and characterization of pillar[5]arene, pagoda[4]arene, prism[5]arene, and prism[6]arene with α,ω-dibromoalkanes and their linear supramolecular polymer assembled via halogen–halogen interactions both in solution and in the solid state.40–43 Moreover, the influence of the crystallization solvent on the host–guest inclusion complexes and the supramolecular self-assembly architectures of asymmetric A1/A2-difunctionalized pillar[5]arenes has been studied, with a direct comparison to their behavior in solution.22 In this paper, we report the crystal structures and supramolecular assemblies of a newly synthesized [2]naphthyl-extended pillar[6]arene. The effects of different crystallization solvents, including dichloromethane (DCM), toluene, ethyl acetate, and N,N-dimethylformamide (DMF) on the solid-state supramolecular architectures are examined. When crystallized from DMF, the [2]naphthyl-extended pillar[6]arene forms a linear supramolecular polymer driven by hydrogen-bonding interactions of the entrapped DMF molecules. The supramolecular interactions of all obtained crystals are characterized in detail using single-crystal X-ray diffraction and Hirshfeld surface analysis.
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30 v/v) followed by slow solvent evaporation. The crystallographic data for the structures reported in this paper have been deposited at the Cambridge Crystallographic Data Centre (CCDC 2405326–2405329).
:
30 v/v) to afford the desired macrocycle as a white solid (128 mg, 29%).1H NMR (600 MHz, CDCl3), δ: 3.64 (s, 12H), 3.73 (s, 12H), 3.93 (s, 4H), 4.07 (s, 8H), 6.71 (s, 4H), 6.77 (s, 4H), 7.26 (s, 2H), 7.27 (s, 2H), 7.48 (s, 4H), 7.55 (s, 2H), 7.56 (s, 2H). 13C NMR (150 MHz, CDCl3), δ: 30.7, 36.6, 56.3, 56.4, 114.1, 114.5, 126.4, 127.5, 127.6, 127.7, 128.5, 132.2, 138.4, 151.5, 151.7. HRMS 880.3970 (calculated for C58H56O8); 880.3971 (found).
In this context, new naphthalene-bridged expanded pillar[6]arene derivative [2]Naph-ExP6 was synthesized starting from 2,6-bis(bromomethyl)naphthalene following a procedure similar to that reported in the literature (Scheme 1).24
Macrocycle arenes connected with methylene are known to be flexible and change their geometry in solution and in the solid state when their cavity is occupied with guest molecules. To explore the effect of the crystallization solvents, suitable single crystals for X-ray diffraction analysis were grown from dichloromethane (DCM), ethyl acetate (EtOAc), toluene (PhMe) and dimethylformamide (DMF). The crystal structures of [2]Naph-ExP6 obtained from four solvent systems along with chemical structure representations are illustrated in Fig. 1. Single-crystal X-ray diffraction analysis revealed that the conformation and overall geometry of the [2]Naph-ExP6 macrocycle are highly dependent on the nature of the encapsulated guest molecules within its cavity.
One naphthalene ring is tilted inward toward the macrocyclic cavity by 47.2° with respect to the mean molecular plane. Its symmetry-related counterpart, oriented parallel to the first, is tilted outward from the cavity by 133.0° (180–47.0°). A similar arrangement is observed for the phenyl rings: one phenyl ring is inclined inward by 48.5°, while its symmetry-related partner is tilted outward by 131.5° (180–48.5°). The remaining pair of opposite phenyl rings is likewise parallel, with one tilted inward by 51.7° and the other outward by 128.3° (180–51.7°). The dihedral angles between adjacent phenyl rings are 85.6°, whereas those between the naphthalene and phenyl rings are 81.1° and 78.3°, respectively.
The encapsulated dichloromethane molecule in the center of the cavity stabilizes the adopted conformation through two short C–Cl⋯H–C(sp3) contacts (2.79 and 2.82 Å), both shorter than the sum of the van der Waals radii (2.95 Å). An additional C–H⋯π contact (3.45 Å) between the guest and the adjacent naphthyl rings, together with two additional CH2Cl2 molecules located diagonally at the outer corners of the cavity, contributes to further reinforce the locked conformation through a combination of C–Cl⋯H–C(sp3), C–H⋯O, and C–H⋯π interactions involving the perpendicularly oriented dimethoxybenzene fragments (Fig. 2).
The intermolecular interactions in the [2]Naph-ExP6·CH2Cl2 crystal were further visualized using the three-dimensional dnorm Hirshfeld surface analysis (Fig. 2c). On the dnorm surface, red regions indicate intermolecular contacts shorter than the sum of the corresponding van der Waals radii, white regions correspond to contacts close to van der Waals separations, and blue regions represent contacts longer than the van der Waals radii. The Hirshfeld surface of the [2]Naph-ExP6·CH2Cl2 system reveals dichloromethane–macrocycle interactions occurring both inside and outside the macrocyclic cavity. The red spots observed at the center of the cavity signify short contacts, which can be attributed to C–H⋯Cl interactions between dichloromethane and the macrocyclic host. In addition, the white regions within the cavity mainly arise from C–H⋯π interactions between CH2Cl2 and [2]Naph-ExP6. Interactions involving dichloromethane molecules located outside the macrocycle are also evident from the 3D dnorm of Hirshfeld surfaces.
In this distorted hexagonal geometry, one naphthalene ring is tilted inward toward the macrocyclic cavity by 57.6° relative to the mean molecular plane. Its symmetry-related counterpart is tilted outward from the cavity by 122.4° (180–57.6°). A similar inward–outward arrangement is observed for the phenyl rings: one phenyl ring is inclined inward by 55.1°, while its symmetry-related partner is tilted outward by 124.9° (180–55.1°). The remaining pair of opposite phenyl rings is likewise parallel, with one ring tilted inward by 83.6° and the other outward by 96.4° (180–83.6°). Dihedral angles between adjacent phenyl rings are 60.6°, and between the naphthalene and phenyl rings are 89.6° and 75.8° respectively.
In the [2]Naph-ExP6·EtOAc complex, two ethyl acetate molecules are partially encapsulated within the cavity, with the ethyl moieties residing inside. The residual void space is occupied by two methoxy substituents from the adjacent [2]Naph-ExP6 unit, stabilizing the crystal packing through inter-macrocyclic interactions (Fig. 3). The methylene hydrogens of the ethyl group of ethyl acetate are stabilized by two C–H⋯π interactions (2.93 and 3.18 Å), while one methyl hydrogen engages in a C–H⋯O contact (2.59 Å) with the oxygen atom of a neighboring macrocycle methoxy group and a C–H⋯π interaction (3.68 Å) with a phenyl ring of the cavity wall. This immersed methoxy group in the cavity is further fixed by two additional C–H⋯π interactions (2.61 and 3.06 Å) involving the naphthyl ring. The second methoxy substituent forms a C–H⋯π interaction (3.02 Å) with a neighboring dimethoxybenzene fragment. An identical arrangement of interactions is observed on the opposite side of the cavity (Fig. S10).
Hirshfeld surface analysis also revealed significant stabilization of the [2]Naph-ExP6 cavity through partial encapsulation of ethyl acetate molecules, along with additional occupancy by methoxy groups from neighboring macrocycles in the crystal lattice. These interactions appear as red spots and white regions on the macrocyclic cavity of the Hirshfeld surface (Fig. 3). Furthermore, the three-dimensional dnorm Hirshfeld surface clearly reveals interactions between an externally located ethyl acetate molecule and [2]Naph-ExP6.
In the observed conformation, one naphthalene ring is tilted inward toward the macrocyclic cavity by 77.0° relative to the mean molecular plane, while its symmetry-related counterpart is tilted outward from the cavity by 103.0° (180–77.0°). For the phenyl rings, one ring is inclined inward by 45.2° relative to the mean molecular plane, whereas its symmetry-related partner is oriented outward at 134.8° (180–45.2°). About the other remaining pair of opposite phenyl rings, one tilted inward by 49.2° and the other outward by 130.8° (180–49.2°).The dihedral angles between adjacent phenyl rings are 84.2°, while those between the naphthalene and phenyl rings are 86.6° and 78.3°, respectively.
In the [2]Naph-ExP6·DMF system, the trapped DMF molecule inside the cavity, which is disordered over two positions, is oriented vertically relative to the macrocyclic plane and stabilized by CH⋯π interactions between the two N,N-dimethyl groups and the rigid naphthalene wall (3.22, 3.36, and 3.38 Å).
Moreover, adjacent DMF molecules from neighboring [2]Naph-ExP6 units are in close proximity, leading to a linear propagation along the crystal lattice through a relatively strong C
O⋯H–C(sp3) hydrogen-bonding interaction of 2.46 Å (ca. 9.6%) shorter than the sum of van der Waals radii (2.72 Å), promoting the formation of a linear supramolecular [2]naphthyl-extended pillar[6]arene polymer within the crystal network (Fig. 4a). The linear assembly was further consolidated by multiple C–H⋯π (3.20 and 3.24 Å) and C–H⋯O (2.69 Å) interactions between the adjacent macrocycle (Fig. S11). This is possible because of the slightly offset alignment of stacked macrocycles.
Furthermore, the intermolecular interactions in the [2]Naph-ExP6·DMF crystals obtained from the DMF-based solvent were visualized using the 3D dnorm of Hirshfeld surface analysis (Fig. 4b). The DMF molecule encapsulated inside the cavity exhibits intense and wide red spots at the center of the cavity opening, resulting from strong C
O⋯H–C(sp3) interactions which imply the dominance of these contacts in the crystal linear assembly. In addition, white regions distributed around the cavity opening reflect the presence of multiple C–H⋯π and C–H⋯O interactions that collectively contribute to stabilizing the overall supramolecular architecture.
Both naphthalene rings in [2]Naph-ExP6·PhMe are oriented exactly perpendicular to the mean molecular plane (90°). For the phenyl rings, one ring is inclined inward slightly by 82.2° relative to the mean molecular plane, while its symmetry-related counterpart is tilted outward at 97.8° (180–82.2°). About the remaining pair of opposite phenyl rings, one tilted inward by 59.9° and the other outward by 120.1° (180–59.9°). The dihedral angles between adjacent phenyl rings are 65.3°, whereas those between the naphthalene and phenyl rings are 67.6° and 61.0°, respectively.
The toluene molecule, which is disordered over two sites, resides in a horizontal orientation within the walls of the hexagonal cavity and held by two relatively strong (sp2)C–H⋯π contacts with the naphthyl moiety (Fig. 5a). The planar toluene gust is involved in (sp3)C–H⋯π interactions (3.26 and 3.47 Å) with the methoxy group of an adjacent macrocycle (Fig. S9). In contrast to the fused naphthyl units that enforce a more defined and rigid-shape architecture, the biphenyl groups reported [2]biphenyl-extended pillar[6]arene ([2]Bp-ExP6) introduce conformational flexibility due to the rotatable inter-ring bond, resulting in a less defined cavity which leads to distinct structural and host–guest characteristics.24 As a result, the host–guest behavior of the two expanded pillar[6]arene scaffolds differs markedly in the solid state (Fig. 5b). The naphthyl-expanded pillar[6]arene, owing to its rigid and planar fused aromatic spacers, encapsulates a single toluene molecule positioned horizontally across the center of the cavity, stabilized by multiple C–H⋯π interactions with the extended naphthyl surfaces. In contrast, the conformationally flexible biphenyl-expanded analogue accommodates two toluene molecules, each residing on opposite sides of the cavity.
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| Fig. 5 Crystal structure of [2]Naph-ExP6 (a) and the reported [2]Bp-ExP6 (b)24 obtained from toluene (PhMe), shown from both side and top views. | ||
The three-dimensional dnorm Hirshfeld surface of the [2]Naph-ExP6 macrocycle containing an encapsulated toluene molecule exhibits a prominent white region within the cavity, along with few faint red spots, indicating the stabilization of the cavity by the included toluene through noncovalent interactions (Fig. S10). In addition, toluene-mediated interactions occurring outside the macrocyclic framework are also clearly evident from the Hirshfeld surface analysis.
Comparison of the four crystal structures shows that solvent inclusion modulates both cavity dimensions and the relative orientation of the aromatic walls in [2]Naph-ExP6. The CH2Cl2 complex displays the most distorted framework (cavity width: 10.53 Å; naphthalene centroid–centroid distance: 9.47 Å) with near-orthogonal aromatic arrangement, as reflected by large dihedral angles between adjacent phenyl rings (85.6°) and between naphthyl/phenyl units (81.1° and 78.3°), consistent with a locked, cage-like conformation stabilized by CH2Cl2 contacts. In contrast, the EtOAc structure adopts a more open hexagonal geometry (width: 11.20 Å; naphthalene separation: 10.84 Å) accompanied by a markedly reduced phenyl–phenyl dihedral angle (60.6°), while the naphthyl–phenyl dihedral angles (89.6° and 75.8°) support partial guest inclusion and cooperative filling of residual voids by neighbouring methoxy groups. For DMF, the cavity width remains comparable (10.94 Å) but the aromatic arrangement reverts toward orthogonality (phenyl–phenyl: 84.2°; naphthyl–phenyl: 86.6° and 78.3°), and the vertically oriented DMF promotes a 1D polymer through strong intermolecular C
O⋯H–C(sp3) contacts. The toluene complex shows a more regular hexagonal framework (naphthalene separation: 9.88 Å) with smaller dihedral angles (phenyl–phenyl: 65.3°; naphthyl–phenyl: 67.6° and 61.0°), consistent with horizontal inclusion of a single toluene molecule stabilized by C–H⋯π interactions.
1H NMR spectra of dichloromethane show no significant changes in the host signals; however, the upfield shift of the DCM proton resonance indicates inclusion within the cavity (Fig. S25). In contrast to toluene, which adopts a horizontal orientation within the cavity, DMF is vertically oriented, as evidenced by the distinct 1H NMR upfield shift pattern, in line with the solid-state structure obtained by single-crystal X-ray diffraction (Fig. S26).
In addition, two-dimensional rotating-frame Overhauser effect spectroscopy (2D ROESY) experiments (Fig. S29 and S30) show clear intermolecular cross-peaks between the naphthyl cavity protons of the host and the formyl proton of the DMF guest, providing direct evidence for encapsulation with a vertical orientation (Fig. S29), whereas the absence of correlations between the aromatic protons of toluene and the naphthyl rim protons of the host is consistent with the horizontal alignment of the benzene ring within the cavity (Fig. S30), in agreement with the solid-state structure. Overall, the solution-state 1H NMR data closely correlate with the solid-state observations, confirming that the guest-dependent binding modes are retained in solution.
A different outcome is observed in DMF assembly, where the macrocycle retains a well-defined hexagonal cavity and the vertically oriented DMF guest mediates the formation of a linear supramolecular polymer through strong C
O⋯H–C(sp3) hydrogen bonding. Additional C–H⋯π and C–H⋯O contacts further consolidate the one-dimensional chain. Hirshfeld surface analysis reveals dominant, intense red regions at the cavity opening associated with these short contacts, confirming the central role of the DMF guest in mediating the linear assembly. Crystallization from toluene yields a well-organized hexagonal cavity that encapsulates a single, horizontally oriented toluene molecule stabilized by (sp2)C–H⋯π interactions with the extended naphthyl walls. Comparison with the reported biphenyl-expanded analogue shows the accommodation of two toluene molecules due to increased conformational flexibility. Overall, [2]Naph-ExP6 displays notable conformational adaptability, enabling diverse host–guest architectures driven by optimized noncovalent interactions. The solution-state 1H NMR data closely correlates with the solid-state observations, confirming that the guest-dependent binding modes are retained in solution. Ongoing studies in our laboratories aim to explore supramolecular self-assemblies with a broader range of macrocyclic arenes and guest compounds.
Supplementary information is available. See DOI: https://doi.org/10.1039/d5ce01118c.
CCDC 2405326–2405329 contain the supplementary crystallographic data for this paper.53a–d
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