Open Access Article
Hana Bawa,
Hong Su
,
Stephen De Doncker,
Susan A. Bourne
and
Luigi R. Nassimbeni
*
Centre for Supramolecular Chemistry Research, Department of Chemistry, University of Cape Town, South Africa. E-mail: Luigi.Nassimbeni@uct.ac.za
First published on 3rd February 2026
Three chiral TADDOL (α,α,α,α′-tetraaryl-2,2-disubstituted 1,3-dioxolane-4,5-dimethanol) host molecules were employed to yield inclusion compounds with three isomers of methylcyclohexanones as guests. Although 4-methylcyclohexanone was not a chiral compound due to its internal symmetry, the other two isomers were racemates, and TADDOLs acted as potential resolving agents. The selectivity preference of the methylcyclohexanones for each host was established using solution nuclear magnetic resonance (NMR) spectroscopy, and the crystal structure of each host–guest compound was elucidated by single-crystal X-ray diffraction. The packing of the structures was analysed to explain the resulting resolution of the enantiomeric guests. The kinetics of decomposition were investigated for a representative TADDOL host.
Since that time, there have been many discoveries and technical applications to the problem of resolution of racemates involving various analytical techniques. These include chiral chromatography, the formation of diastereomeric salts, using enzymes that regulate and catalyse biochemical pathways, and resolution by entrainment. In particular, the work by Vries et al.3 demonstrated that that using a mixture of similar host compounds yields better resolution than employing individual compounds. This method, known as the “Dutch resolution method” has proved valuable in the pharmaceutical industry.
In this work, we present the results of the selectivity and resolution of methylcyclohexanones by three TADDOL chiral host compounds, which are also used as resolving agents for two of the three racemic methylcyclohexanones: 2-methylcyclohexanone (2-MeCHN) and 3-methylcyclohexanone (3-MeCHN), both of which are chiral, and 4-methylcyclohexanone (4-MeCHN), which is not chiral due to its internal symmetry. TADDOL is an acronym for α,α,α,α′-tetraaryl-2,2-disubstituted 1,3-dioxolane-4,5-dimethanol. The three host molecules, labelled H1, H2, and H3, together with the methylcyclohexanone guests, are shown in Scheme 1.
TADDOLs are widely used host compounds, and their structures are well represented in the Cambridge Structural Database (CSD),4 which lists more than 100 compounds of the TADDOL structure and their inclusion compounds. They were described in a review entitled ‘Molecular Recognition in the Solid State’, which explains that they are important because they are derived from naturally occurring tartaric acid.5 TADDOLs are used as separating agents for dialkyl arylphosphine oxides,6 heterocyclic molecules7 and methylpyridines.8
Methylcyclohexanones have also attracted research interest, and their structures have been studied, with CSD yielding a total of 38 structures as guest molecules with a variety of hosts. For example deoxycholic acid (DCA) includes all the methylcyclohexanones and competition experiments showed the selectivity preference was of the order 2-MeCHN > 3-MeCHN > 4-MeCHN, which were confirmed by their structures, NMR and thermal analysis.9 The host 2,2′-(benzene-1,4-diyl-diethynylene)diborneol, a dumb-bell-shaped molecule, resolved both 2-MeCHN and 3-MeCHN as the S conformers.10 An interesting result was reported in which the recrystallization of 3-MeCHN with a chiral host resulted in partial resolution, but recrystallization from an equimolar mixture of this host and a similar but achiral host achieved full resolution of 3-MeCHN. The achiral host acts as a nucleation inhibitor and the enhanced resolution was attributed to kinetic effects.11
Intensity data were collected using both phi (ϕ) and omega (ω) scan techniques, and data reduction and unit cell refinement were carried out using SAINT-Plus,13 followed by XPREP,14 which uses systematic absence to determine the space group. Absorption corrections of the collected intensities were applied using SADABS.15 The structures were solved using direct methods with SHELXS-97 and refined using full-matrix least-squares methods in SHELXL.16 Hydrogen atoms were refined using riding models. For the O–H and N–H groups, the H atoms were allowed to refine freely. The structure solution and refinement processes were carried out using the X-Seed graphical interface,17 while final molecular graphics and high-resolution images were produced using X-Seed in conjunction with POV-RAY.18
:
guest ratio was 1
:
49). The ensuing inclusion compound crystals were analysed by NMR (Table 1). The results are plotted on an equilateral triangle, in which the apices represent the pure guest (MeCHNs), Fig. 1. The starting concentration is shown as a black dot representing the mole fraction of each MeCHN guest as 1/3, and their final concentrations are shown by the arrows for H1, H2 and H3. H1 shows a modest preference for 3-MeCHN, while H2 and H3 disfavour 2-MeCHN and tend towards 4-MeCHN.
| 2-MeCHN | 3-MeCHN | 4-MeCH | |
|---|---|---|---|
| Start | 33.3% | 33.3% | 33.3% |
| End H1 | 25% | 50% | 25% |
| End H2 | 0% | 25% | 75% |
| End H3 | 0% | 27% | 73% |
![]() | ||
| Fig. 1 Selectivity of the hosts H1, H2 and H3 for the mixtures of methylcyclohexanones (2-MeCHN, 3-MeCHN, and 4-MeCHN). | ||
One of the common features of all these structures is that the conformation of the host molecules places their hydroxyl groups in close proximity, resulting in an intramolecular hydrogen bond (O–H⋯O) and a further hydrogen bond to the guest (O–H⋯O
C) of the carbonyl O of the methylcyclohexanone. The details of the hydrogen bonding for all the structures are reported in the SI in Tables S2 and S3.
The description of these eight crystal structures has been organised by guest species.
| Structure | I | IV | VII |
|---|---|---|---|
| Structural formula | H1·(2-MeCHN) | H2·(2-MeCHN) | H3·(2-MeCHN) |
| Structural formula | C31H30O4·C7H12O | C33H32O4·C7H12O | C34H34O4·C7H12O |
| Host/guest ratio | 1 : 1 |
1 : 1 |
1 : 1 |
| Molecular mass (g mol−1) | 578.71 | 604.75 | 618.78 |
| Data collection temp (K) | 100(2) | 100(2) | 100(2) |
| Crystal system | Monoclinic | Orthorhombic | Triclinic |
| Space group | P21 | P212121 | P1 |
| a (Å) | 9.448(1) | 9.254(7) | 9.334(1) |
| b (Å) | 9.526(1) | 16.608(1) | 9.951(1) |
| c (Å) | 34.801(4) | 21.476(2) | 18.611(3) |
| α (°) | 90 | 90 | 100.611(4) |
| β (°) | 90.218(4) | 90 | 98.637(4) |
| γ (°) | 90 | 90 | 91.317(4) |
| Volume (Å3) | 3112.0(8) | 3300.5(4) | 1677.5(4) |
| Z | 4 | 4 | 2 |
| Dc, calc density (g cm−3) | 1.227 | 1.217 | 1.225 |
| F(000) | 1240 | 1296 | 664 |
| Range θ(°) | 2.156–27.195 | 2.396–28.312 | 2.085–28.491 |
| Reflections collected | 127 696 |
43 859 |
57 694 |
| No data I > 2σ(I) | 12 886 |
7499 | 13 728 |
| Final R indices [I > 2σ(I)], R1/wR2 | 0.1151/0.3212 | 0.0386/0.0901 | 0.0898/0.1080 |
| R indices (all data), R1/wR2 | 0.1199/0.3244 | 0.0440/0.0933 | 0.2041/0.2155 |
| Goodness of fit on F2 | 1.058 | 1.028 | 1.052 |
| CCDC no | 2479981 | 2479985 | 2479987 |
Sin θ/λ (Å−1) |
0.643 | 0.667 | 0.671 |
Structure I, H1·(2-MeCHN), crystallizes in space group P21 with Z = 4. There are two host molecules in the asymmetric unit (ASU), Fig. 2a. Both guest enantiomers lie on the same site, giving rise to disorder for which we modelled the site occupancy factors. The guests labelled with the suffix X (62% S) and Y (38% R) are hydrogen bonded to host molecule A. Those labelled W (45% S) and Z (55% R) are hydrogen bonded to host molecule B. They are shown in Fig. 2a using the colour code green/violet for the R-enantiomer and orange/blue for the S-enantiomer. The packing shown in Fig. 3 demonstrates that the guest 2-MeCHN molecules are located in channels along [010] and that the two crystallographically independent hosts pack in layers parallel to [010].
We note that this compound is difficult to crystallize. This structure shows that the host captures 2-MeCHN, but these are enclathrated in approximately equal proportions of R and S enantiomers. The enantiomeric excess (e.e.) of S was only 7%. Thus, the resolution of 2-MeCHN using H1 does not work in practice.
Structure IV, H2·(2-MeCHN), crystallises in space group P212121 with Z = 4, and each host molecule enclathrates one guest molecule. The guest molecule is disordered and shares the same location, as shown in Fig. 2b. This shows the intramolecular H-bond (O⋯O = 2.673(1) Å), and the guests X (orange; S) and Y (green; R) are hydrogen-bonded via (host) O–H⋯O
C(2-MeCHN) = 2.76(1) Å and 2.80(1) Å, respectively. The resolution is poor with 52% R and 48% S, yielding an enantiomeric excess (e.e.) of only 4%.
Structure VII, H3·(2-MeCHN), crystallises in space group P1 with Z = 2, and a host
:
guest ratio of 1
:
1 host A is partly disordered in one phenyl ring, and both 2-MeCHN guests are disordered and display mixed chirality. The guest H-bonded to host A is labelled X (30% R) and Y (70% S), with O⋯O = 2.79(2) Å and 2.62(1) Å. Host B is similarly H-bonded to guest W (38% S) and Z (62% R) with (host) O⋯O (guest) 2.69(3) Å and 2.76(1) Å (Fig. 2c). Overall, considering both guests, the (e.e.) is 24% R, a poor resolution result.
The packings of IV and VII are shown in Fig. 4. Guests are located in channels in both cases.
![]() | ||
| Fig. 4 Packing in (a) IV and (b) VII, showing the guests located in channels. The guest 2-MeCHN is disordered, with both enantiomers occupying the same sites and different site occupancy factors. | ||
| Structure | II | V |
|---|---|---|
| Structural formula | H1·(3-MeCHN) | H2·(3-MeCHN) |
| Structural formula | C31H30O4·C7H12O | C33H32O4·C7H12O |
| Host/guest ratio | 1 : 1 |
1 : 1 |
| Molecular mass (g mol−1) | 578.71 | 604.75 |
| Data collection temp (K) | 100(2) | 100(2) |
| Crystal system | Orthorhombic | Orthorhombic |
| Space group | P212121 | P212121 |
| a (Å) | 9.256(1) | 9.655(7) |
| b (Å) | 9.383(1) | 11.226(7) |
| c (Å) | 35.837(5) | 29.717(2) |
| α (°) | 90 | 90 |
| β (°) | 90 | 90 |
| γ (°) | 90 | 90 |
| Volume (Å3) | 3112.3(6) | 3220.6(4) |
| Z | 4 | 4 |
| Dc, calc density (g cm−3) | 1.235 | 1.247 |
| F(000) | 1240 | 1296 |
| Range θ(°) | 2.450–28.367 | 1.939–28.336 |
| Reflections collected | 37 416 |
80 407 |
| No data I > 2σ(I) | 7084 | 7465 |
| Final R indices [I > 2σ(I)], R1/wR2 | 0.0654/0.0714 | 0.0393/0.0436 |
| R indices (all data), R1/wR2 | 0.1703/0.1753 | 0.0979/0.1013 |
| Goodness of fit on F2 | 1.049 | 1.036 |
| CCDC no | 2479982 | 2479986 |
Sin θ/λ (Å−1) |
0.668 | 0.668 |
Both II, H1·(3-MeCHN), and V, H2·(3-MeCHN), crystallize in space group P212121 with Z = 4, and a host
:
guest ratio of 1
:
1 although the unit cell axis lengths differ significantly. The asymmetric units for these structures are shown in Fig. 5. This illustrates both the intramolecular H-bond and the H-bond to the 3-MeCHN guest (details are shown in Tables S2 and S3). The conformation at the 3-methyl carbon is S in II, and R in V, indicating that H1 and H2 can resolve 3-methylcyclohexanone. The guest molecules fill cavities in the crystal structure, as shown in Fig. 6 for II and in Fig. S1 for V.
![]() | ||
| Fig. 7 Asymmetric units of (a) III, (b) VI, and (c) IX. All displacement ellipsoids are drawn at 50% probability. | ||
| Structure | III | VI | IX |
|---|---|---|---|
| Structural formula | H1·(4-MeCHN) | H2·(4-MeCHN) | H3·(4-MeCHN) |
| Structural formula | C31H30O4·C7H12O | C33H32O4·C7H12O | C34H34O4·C7H12O |
| Host/guest ratio | 1 : 1 |
1 : 1 |
1 : 1 |
| Molecular mass (g mol−1) | 578.71 | 604.75 | 618.78 |
| Data collection temp (K) | 100(2) | 100(2) | 100(2) |
| Crystal system | Orthorhombic | Orthorhombic | Orthorhombic |
| Space group | P212121 | P212121 | P212121 |
| a (Å) | 9.324(2) | 9.181(2) | 9.324(2) |
| b (Å) | 12.457(2) | 15.953(4) | 15.978(4) |
| c (Å) | 26.951(7) | 22.039(6) | 22.244(6) |
| α (°) | 90 | 90 | 90 |
| β (°) | 90 | 90 | 90 |
| γ (°) | 90 | 90 | 90 |
| Volume (Å3) | 3130.3(12) | 3228.0(1) | 3314.0(14) |
| Z | 4 | 4 | 4 |
| Dc, calc density (g cm−3) | 1.228 | 1.244 | 1.240 |
| F(000) | 1240 | 1296 | 1328 |
| Range θ(°) | 2.311–28.361 | 2.403–28.384 | 2.368–28.337 |
| Reflections collected | 47 934 |
81 428 |
91 602 |
| No data I > 2σ(I) | 6885 | 7220 | 7856 |
| Final R indices [I > 2σ(I)], R1/wR2 | 0.0391/0.0486 | 0.038/0.084 | 0.0321/0.0345 |
| R indices (all data), R1/wR2 | 0.0890/0.0941 | 0.047/0.089 | 0.0793/0.0808 |
| Goodness of fit on F2 | 1.041 | 1.029 | 1.032 |
| CCDC no | 2479983 | 2479997 | 2480004 |
Sin θ/λ (Å−1) |
0.668 | 0.668 | 0.668 |
All three structures with 4-MeCHN crystallize in the space group P212121 with Z = 4 and a host
:
guest ratio of 1
:
1 and have similar unit cell dimensions. The asymmetric units for these structures are shown in Fig. 7, showing both the intramolecular H-bond and the H-bond to the 4-MeCHN guest (details are shown in Tables S2 and S3). 4-MeCHN is achiral and is included here for comparison purposes. The methyl group on the cyclohexanone is equatorial in all three structures.
C-(guest), are similar, with O⋯O distances of 2.76(1) Å (R) and 2.80(1) Å (S). The mean plane of the 2-MeCHN guests is perpendicular to [001].
Structure V has 3-MeCHN guests lying in channels parallel to [100] but oriented with their mean planes parallel to [110]. (Host)-O–H⋯O
C-(guest) hydrogen bonds have O⋯O distances of 2.77(2) Å.
Although the channels in structure VI are also parallel to [100], the 4-MeCHN guests are oriented with their mean planes perpendicular to [001] and an O⋯O hydrogen bond distance of 2.76(2) Å.
We observe that none of the structures of the inclusion compounds with H1, H2, and H3 crystallised with 2-MeCHN were resolved. The crystals obtained from these solutions were the slowest to appear. We also note that in structure II, H1·(3-MeCHN), host H1 resolved 3-MeCHN as ‘S’, but that in structure V, H2·(3-MeCHN), resolved 3-MeCHN as ‘R’. In these hosts, the groups bonded at position 2 of the dioxolane ring are quite different in bulk (dimethyl versus cyclic pentomic in H1 and H2, respectively). Analysis of the non-bonded interactions showed that the cyclic pentomic ring has a close contact of 3.93(1) Å with the chiral carbon (C) atom of 3-MeCHN, but this has no equivalent with H1. Although 4-MeCHN is achiral, it is included in this study for comparison; the structures of all three inclusion compounds with this guest are isostructural.
We note that the TG curves, showing the decomposition of the inclusion compounds, display a two-step reaction, which is particularly pronounced in structure VI, H2·(4-MeCHN). In order to ensure consistency in the comparison of activation energies obtained, we analysed only the early decomposition reaction in each case. The results are shown in Fig. 9–11. A small decomposition step at the beginning of some TG curves is attributed to the surface solvent.
An example is shown in Fig. 9(a) for the decomposition of structure IV, H2·(2-MeCHN), in which the heating rates, β, were changed geometrically as β+ 2, 4, 8, 16 °C min−1, and the plot of log (β/β0) versus 1000 K/T is shown in Fig. 9(b). The slope of these curves yielded an average energy of activation of 48.9 kJ mol−1.
The same procedure was followed for the decomposition of structure V, H2·(3-MeCHN), where the decay curves are shown in Fig. 10(a) and the corresponding semi-logarithmic plot is depicted in Fig. 10(b). In this instance, the activation energy of decomposition has an average of 66.2 kJ mol−1.
The experiment of the decomposition of structure VI, H2·(4-MeCHN) showed an uncommon result, and it was noted that only at heating rates of 1 °C min−1 and 2 °C min−1 did the decomposition reaction display a stoichiometry with an H
:
G ratio of 1
:
1. At higher heating rates, the decomposition shows a more complex mechanism of guest loss. We therefore analysed only the beginning of the reaction, namely at a mass loss of 5%, 10% and 15%. The decomposition traces are shown in Fig. 11(a), and the corresponding semi-logarithmic plot in Fig. 11(b), which gave an activation energy of the starting reaction of 73.3 kJ mol−1.
We note that all the structures with the guest (2-MeCHN) are disfavoured in comparison with (3-MeCHN) and (4-MeCHN) (see Fig. 1). It is noteworthy that the calculated densities of the structures with (2-MeCHN) are lower, possibly resulting from the disorder of this guest that occurs in these structures. The activation energy for the H2·(2-MeCHN) decomposition reaction is 48.9 kJ mol−1, which is lower than that of H2·(3-MeCHN) and H2·(4-MeCHN) with the average values of 66.2 kJ mol−1 and 73.3 kJ mol−1, respectively. This indicates that a poorly packed structure is likely to present a lower activation energy of decomposition. We also carried out the same analysis on H1·(3-MeCHN) for comparison. The activation energy averages 73.1 kJ mol−1 (Fig. S4), which is similar to that of H2·(4-MeCHN). We note that Fig. 1 shows that H1 preferentially includes 3-MeCHN while H2 prefers 4-MeCHN, so the activation energies are consistent with the selectivity results.
CCDC 2479981–2479983, 2479985–2479987, 2479997 and 2480004 contain the supplementary crystallographic data for this paper.22a–h
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