Lucia
Suarez Menendez
a,
David J.
Owen
b,
Nathan R.
Zaccai
b,
Armando
Maestro
*ac and
Alberto
Alvarez-Fernandez
*a
aCentro de Física de Materiales (CFM) (CSIC–UPV/EHU) – Materials Physics Center (MPC), Paseo Manuel de Lardizabal 5, San Sebastián, 20018, Spain. E-mail: armando.maestro@ehu.eus; alberto.alvarez@ehu.eus
bCambridge Institute for Medical Research, University of Cambridge, Cambridge CB22 7QQ, UK
cIKERBASQUE-Basque Foundation for Science, Plaza Euskadi 5, Bilbao, 48009, Spain
First published on 28th April 2025
Studying biological membranes is essential for understanding key cellular processes such as signal transduction and ion transport, which have significant implications for developing advanced therapies for diseases like cancer and cardiovascular disorders. However, the structural complexity of these membranes presents challenges for detailed analysis, necessitating advanced techniques that are often incompatible with in-cell studies. As a result, current research has shifted toward fabricating artificial membranes that closely mimic their natural counterparts. A critical limitation remains in replicating the natural curvature of biological membranes that restricts the effectiveness of existing flat in vitro models. In response, this study introduces block copolymer (BCP) lithography as a method for creating nanostructured surfaces that induce controllable local membrane curvature. Lipid bilayer formation was confirmed using atomic force microscopy (AFM) and quartz crystal microbalance with dissipation monitoring (QCM-D). Subsequent investigations into clathrin assembly lymphoid myeloid-leukemia (CALM) protein interactions with curved membranes revealed a preferential binding to curved surfaces, characterized by a more homogeneous protein distribution compared to flat membranes. These findings enhance our understanding of membrane–protein interactions and cellular processes, opening up potential applications in drug delivery and biosensing.
Cellular membranes are dynamic, three-dimensional structures characterized by intricate curvatures, including invaginations, protrusions, and tubulations that extend across a range of length scales.15 From the nanoscale curvature of protein–lipid complexes to the larger-scale curvature of organelles, membrane shape plays a pivotal role in processes such as vesicle trafficking, signal transduction, and cell division.16,17 While the impact of micron-scale membrane curvature has been extensively studied, the influence of nanometer-scale curvature on protein–lipid interactions remains poorly understood. For example, the formation of clathrin-coated pits during endocytosis is linked to the generation of highly curved membrane regions.18 This process can be facilitated by several proteins, such as the clathrin assembly lymphoid myeloid-leukaemia protein (CALM),19 which are able to sense and respond to membrane topology.20
Artificial membrane systems, such as free-standing spherical liposomes, are widely employed to study membrane curvature due to their versatility in mimicking cellular shapes. While these vesicles range in size from tens of nanometers to micrometers, only the larger, micrometre-sized liposomes can be reliably manipulated into tubular or rod-like geometries to replicate specific membrane deformations. However, these approaches primarily address curvature on the micron scale and often lack the precision needed to control nanometric membrane morphology, which is crucial for studying curvature-sensitive processes. Furthermore, existing techniques for probing nanometric curvature, such as cryo-electron microscopy (cryo-EM), small-angle scattering, and fluorescence-based methods, have significant limitations. Cryo-EM offers static snapshots and lacks dynamic insights, scattering techniques rely on ensemble averaging, and fluorescence-based approaches may perturb membrane properties. Combined with challenges related to liposome stability and reproducibility, these constraints underscore the need for a robust, reproducible experimental system that can be used to systematically investigate protein–lipid interactions under controlled nanometric curvature conditions.
Supported lipid bilayers (SLBs) provide an attractive alternative for studying membrane processes due to their high homogeneity.21 As a result, SLBs have been widely used to study membrane–protein interactions, as well as lipid raft formation, drug delivery mechanisms, and membrane fusion events.22–25 SLBs are most commonly prepared through the fusion of small unilamellar vesicles, which typically range in size from 20 to 100 nm, onto planar surfaces such as polished mica or silicon substrates.21 This approach offers significant advantages over other fabrication techniques, like Langmuir–Blodgett deposition,26 spin-coating,27 or rapid solvent exchange,28 due to its scalability and versatility, as well as the ability to integrate functional molecules such as membrane proteins. In this sense, it can be inferred that since SLBs replicate the topology of the underlying substrates, using patterned or nanostructured surfaces could enable the fabrication of SLBs with greater control over membrane shape and curvature.
One of the key limitations hindering the development of this approach is the challenge of fabricating nanoscale features with precision, tunability, and scalability over large surface areas.29 Top-down methodologies, such as electron-beam lithography and nano-imprinting, are commonly employed but require expensive equipment and time-intensive procedures.30 In contrast, bottom-up methodologies, such as colloidal assembly and block copolymer (BCP) self-assembly, have emerged as promising alternatives, enabling the fabrication of highly tuneable and controllable nanopatterned surfaces.31–33 In this sense, silica nanoparticle arrays fabricated via Langmuir–Schaefer deposition have recently been used to generate curved lipid membranes.34 However, the potential of these surfaces for studying curvature-driven biological processes has not been explored yet. Moreover, the developed methodology offers limited tunability, highlighting the need for new fabrication approaches.
In this study, we introduce BCP lithography as a robust methodology for fabricating highly ordered nanosurfaces, enabling the creation of lipid membranes with controllable local curvature (Fig. 1). The main advantage of this fabrication approach over previous methods lies in its tunability and scalability. Key structural parameters of the final inorganic arrays, such as spatial resolution, curvature, and motif interdistance, can be precisely controlled, typically in the 20–100 nm range, by adjusting the molecular weight of the block copolymer (BCP) used as a template. Moreover, the use of spin coating enables uniform nanostructuring over large surface areas (cm2 scale) in a straightforward and scalable manner. Using this approach, we investigated the interaction of CALM with curved 1,2-dioleoyl-sn-glycero-3-phosphocholine (DOPC)-based bilayers. CALM is an ideal model for studying how membrane curvature influences protein interactions and membrane dynamics. Previous studies have highlighted the critical role of the protein's N-terminal amphipathic helix (AH0), which was proposed to sense and/or induce membrane curvature, facilitating clathrin-coated vesicle formation. Therefore, this study presents a novel approach that combines advanced nanofabrication techniques with curvature-sensitive biological investigations, offering valuable insights into membrane–protein interactions at the nanoscale. By systematically exploring the effects of local curvature on membrane behaviour and protein interactions, this work addresses critical gaps in our understanding of curvature-driven processes, paving the way for future advancements in membrane biology and its biomedical applications.
Nanostructured surfaces were successfully fabricated via BCP lithography. To achieve this, poly(styrene)-block-poly(4-vinyl pyridine) (PS-b-P4VP) BCP was used as the starting material. A 0.5 wt% solution of the polymer in propylene glycol mono methyl ether acetate (PGMEA) was spin-coated onto silicon substrates. Atomic force microscopy (AFM) revealed a well-defined out-of-plane cylindrical structure of P4VP embedded within the PS matrix immediately after the casting process, as shown in Fig. 2A. To achieve selective functionalization, the BCP film was immersed in an aqueous solution of H2PtCl4, facilitating the incorporation of PtCl42− ions into the P4VP cylinders (Fig. 2B). This functionalization exploits the Brønsted base character of the P4VP block and the ionic interaction between its pyridinium moieties and platinum ions (Fig. S1, ESI†).32 The selective nature of this interaction is corroborated by the AFM topographical profiles (Fig. 2G), while their structural stability is validated by the corresponding power spectral density (PSD) analysis (Fig. 2H).
A constant centre-to-centre distance (Dc–c) of 25 nm is maintained before and after selective functionalization (Fig. 2H). Following a final etching step using oxygen plasma to degrade the BCP, an array of inorganic platinum (Pt) NPs is formed. Analysis of the topographical profiles reveals an average NP height of ≈10 nm and a diameter of ≈25 nm (Fig. 2G), demonstrating the effectiveness of this methodology in producing well-defined nanostructures. GISAXS confirmed the observed morphology extended over large surface areas (mm2). The 2D scattering patterns (Fig. 2D–F) and corresponding 1D line cuts (Fig. 2I) validate the structural order and orientation of the created features. The presence of intense Bragg rods along qz confirms the out-of-plane orientation of the cylindrical structures, while the higher-order Bragg rods at q/q* = √3 and 2 corroborate the observed hexagonal packing arrangement. Additionally, the Dc–c calculated from the q-value of the first Bragg rod aligns closely with the measurements obtained via AFM, confirming further the stability of the structure through the full fabrication process.
The next step in the fabrication process involved the formation of lipid bilayers onto both nanostructured and flat surfaces. In this objective, DOPC liposomes, of approximately 100 nm in diameter, were prepared by extruding a lipid suspension in tris-buffered saline (TBS) through a polycarbonate membrane with 100 nm pores. Dynamic light scattering (DLS) confirmed the homogeneity of the liposomes (Fig. S2A, ESI†). These liposomes were subsequently deposited onto the surfaces (Fig. 3A). AFM imaging verified liposome fusion and the formation of a lipid bilayer. Fig. 3B presents the topographical image of the DOPC bilayer on flat mica surfaces, while Fig. 3C displays the corresponding AFM image for the nanostructured surface. Height histograms of the Pt NP arrays, before and after lipid bilayer formation, show a height decrease of approximately 4 nm, consistent with the expected thickness of a lipid bilayer (Fig. 3D and E). Local membrane curvature was confirmed from the topographical profiles (Fig. 3F). Given the Dc–c of 25 nm between adjacent Pt NPs, the estimated radius of curvature (R) of the features is approximately 12.5 nm. This corresponds to a mean curvature (H = 1/2R) of approximately 0.04 nm−1. This nanoscale curvature induces significant alterations in lipid packing and bilayer mechanics.
GISAXS 2D scattering patterns confirmed the stability of the nanostructured surfaces during the liposome fusion and bilayer formation (Fig. 3G–I). Furthermore, the changes observed at a higher q-range after the deposition of the liposomes confirm the successful formation of the lipid bilayer onto the platinum NP array (Fig. 3H and I).
Quartz crystal microbalance with dissipation monitoring (QCM-D) is particularly well-suited for monitoring lipid bilayer deposition as it can provide real-time, label-free measurements of lipid mass accumulation and viscoelastic changes at the sensor surface during bilayer formation.21,35 QCM-D measurements confirmed the formation of solid-supported DOPC bilayers on both planar and nanostructured surfaces (Fig. 4A and B). Both surface geometries gave similar frequency shifts (ΔF ≈ 30 Hz), which were consistent with typical values reported for liposome fusion and lipid bilayer formation (Fig. 4i and iii).21 However, the dissipation was slightly larger on nanostructured surfaces (ΔD = 4 ppm) compared to planar surfaces (ΔD = 3 ppm). This increase in dissipation likely reflects the higher flexibility and dynamic behaviour of the DOPC bilayer on nanostructures. The local curvature induced by the nanostructures may result in asymmetry in lipid packing and reduced mechanical coupling with the substrate. Furthermore, the topographical heterogeneity of the nanostructures may introduce regions of varying lipid organization, further contributing to the observed dissipation differences. These findings underscore the impact of nanoscale topography on bilayer viscoelastic properties.
As a final step in our work, we address a fundamental question: does lipid topography influence protein spatial distribution? In living cells, lipid membranes undergo dynamic topographical changes, which can have profound effects on protein interactions. To investigate this, we examined how local membrane curvature affects protein binding. CALM, which is able to sense membrane curvature, as well as promote membrane deformation.36 Preliminary DLS experiments validated the interaction between CALM and the lipid bilayer in solution. When DOPC liposomes were exposed to increasing concentrations of CALM, their diameter increased significantly, from 100 nm to 300 nm, confirming a favourable interaction between CALM and DOPC lipid membranes (Fig. S2B, ESI†).
The interaction between CALM and DOPC bilayers on planar and curved surfaces was monitored by QCM-D. Upon the addition of CALM to previously assembled DOPC SLBs (Fig. 4i and iii), a significant decrease in ΔF was observed (Fig. 4ii and iv). This frequency drop indicates that CALM is interacting with the bilayer. After a washing step with buffer solution, the frequency changes gradually stabilized at δF = ΔFDOPC − ΔFCALM ≈ 2 Hz and 5 Hz for the flat and curved surfaces, respectively. These stabilized values indicate the persistent binding of CALM, with a stronger interaction observed for the curved surface, emphasizing the influence of local membrane curvature on CALM binding affinity. These differences in frequency changes were consistently observed, indicating a stronger binding affinity of CALM influenced by the local curvature of the DOPC membranes formed on the Pt NP array (Fig. S3, ESI†). To confirm this trend, a higher concentration of CALM solution (2 μM compared to 0.5 μM) led to more pronounced changes (Fig. S4, ESI†) Nonetheless, the overall trend remained consistent, with greater CALM interaction observed on the curved bilayer. These results clearly demonstrate that curved bilayers recruit a higher number of CALM proteins, emphasizing the significant influence of membrane curvature on CALM binding.
Dissipation measurements (ΔD) of viscoelastic behaviour provide further insight into both the formation of DOPC bilayers and the interaction with CALM. After DOPC liposomes fusion, ΔD values reached typical ranges for DOPC bilayers (3–6 ppm), confirming successful bilayer formation.21 The observed increase in ΔD after CALM addition is consistent with protein adsorption onto the lipid bilayer. However, after a washing step, even though CALM is still bound to the membrane, according to the QCM-D analysis, the ΔD values stabilized at levels similar to those of the pristine curved and planar lipid bilayer, respectively. This suggests that CALM forms a layer on top of membranes, irrespective of curvature or flatness, with minimal impact on the membrane's overall viscoelastic properties (Fig. S3C and D, ESI†).15 Only at starting higher CALM concentrations on flat membranes is a change in dissipation observed after the wash, suggesting the protein has altered the membrane's viscoelastic properties.
AFM measurements corroborated QCM-D results regarding the observed differences in CALM's binding to DOPC bilayers in response to membrane curvature. Representative topographical AFM micrographs of the QCM-D sensor surfaces after CALM binding are shown in Fig. 5. On flat DOPC bilayers, CALM formed large clusters as large as 1 μm across the membrane surface (Fig. 5A). Conversely, CALM distributed more homogeneously on locally curved DOPC membranes, with no observable aggregation (Fig. 5B). The dimensions of the observed objects are consistent with individual CALM proteins, measuring approximately 40–50 nm. Topographical profiles (Fig. 5C) further support these observations.
Given that the size of the Pt NPs is on the order of 15–20 nm, it may prevent CALM proteins from interacting with the negatively curved membrane regions between the dots. Therefore, we can assume that CALM preferentially associates with the apex of the Pt array mounds, where the membrane exhibits positive curvature. This nanostructured array has thus highlighted the crucial role of membrane topology in CALM binding. Curvature has been proposed to introduce membrane defects, which would locally appear as having lower lateral membrane pressure. The observation presented here corroborates recent tensiometry measurements, which demonstrated that CALM binds with higher affinity to lipid monolayers under lower lateral pressure, suggesting a preference for binding a curvature.
The stability of the Pt NP array throughout the process is confirmed by the AFM phase image in Fig. 5D. Due to the significant contrast between the hard, metallic particles and the soft DOPC membrane, the Pt nanoparticles remain clearly visible, demonstrating that the nanostructured substrate maintains its integrity during lipid bilayer formation and subsequent protein interactions.
Footnote |
† Electronic supplementary information (ESI) available. See DOI: https://doi.org/10.1039/d5tb00689a |
This journal is © The Royal Society of Chemistry 2025 |