Martin 
            Dehnert
          
        
       *, 
      
        
          
            Tiberius 
            Klose
*, 
      
        
          
            Tiberius 
            Klose
          
        
       , 
      
        
          
            Yang 
            Pan
, 
      
        
          
            Yang 
            Pan
          
        
       , 
      
        
          
            Dietrich R. T. 
            Zahn
, 
      
        
          
            Dietrich R. T. 
            Zahn
          
        
       , 
      
        
          
            Maximilian 
            Voigtländer
, 
      
        
          
            Maximilian 
            Voigtländer
          
        
       , 
      
        
          
            Johannes F. 
            Teichert
, 
      
        
          
            Johannes F. 
            Teichert
          
        
       and 
      
        
          
            Robert 
            Magerle
 and 
      
        
          
            Robert 
            Magerle
          
        
       *
*
      
Fakultät für Naturwissenschaften, Technische Universität Chemnitz, Chemnitz, Germany. E-mail: martin.dehnert@physik.tu-chemnitz.de; robert.magerle@physik.tu-chemnitz.de
    
First published on 9th September 2025
The function of lipids in collagen fibrils is not well understood. The types and amounts of lipids present in collagen fibrils are particularly unknown. Triacylglycerols (TAGs) are a major class of lipids found in tendons and connective tissue. In this study, we measured the proportion of TAGs in single collagen fibrils obtained from chicken calcaneal tendons and investigated how TAGs affect the mechanical properties of collagen fibrils. An analytical protocol using 3D depth profiling with atomic force microscopy (AFM) was developed to measure the proportion of TAGs in single collagen fibrils. We found that collagen fibrils from chicken tendons contain an unexpectedly large amount of TAGs, on average 9% of the dry fibril volume, and that TAGs act as plasticizers, softening the fibrils and reducing their water content. Spectroscopic data from Raman and 1H NMR revealed the chemical identity of TAGs in collagen fibrils. We propose that TAGs are irregularly intercalated within the collagen crystal lattice and display liquid-like disorder. This challenges the current understanding of the chemical composition of native collagen fibrils. Furthermore, our findings demonstrate that structurally embedded lipids, such as TAGs, can modulate cohesive forces between proteins at the molecular level.
Lipids are a diverse group of amphiphilic molecules with different physicochemical properties and various biological functions.10 They are closely associated with collagen molecules, as is known from the chemical purification of collagen from natural sources.11–13 However, the only model describing the 3D molecular structure of type I collagen fibrils in native tendon based on X-ray diffraction data14 (PDB ID: 3HR2) contains no lipids intercalated within the collagen lattice structure. Triacylglycerols (TAGs) are the major lipid component of tendons, cartilage, and other connective tissues.15 Lipids are found in the tendon ground substance, which embeds the densely packed type I collagen fibrils,16 and in the synovial fluid, which acts as a lubricant between the tendon and the tendon sheath. In cases of obesity and other diseases, cholesterol and cholesterol esters accumulate in the interfibrillar matrix between collagen fibrils, where they can form granular domains (xanthomata).17–19 In such cases, cholesterol and cholesterol esters are intercalated into the collagen crystal lattice, a phenomenon that is considered pathological.20,21 However, the lipid content of single collagen fibrils has not been studied.
Here, we report an analytical protocol to measure the proportion of lipids in single collagen fibrils. The protocol uses 3D depth profiling with atomic force microscopy (AFM) to accurately measure the shape of collagen fibrils when they are partially covered by fluids.22,23 The key lies in a washing sequence in which a non-polar solvent (hexane) first removes lipids adhering to the fibrils, followed by a polar solvent mixture (dichloromethane/methanol) that extracts lipids from the fibril interior. After each washing step, we used AFM to measure the resulting changes in cross-sectional area, water content, and indentation modulus of each collagen fibril.22,23 The change in cross-sectional area yields the volume fraction of lipids that was removed from each collagen fibril by washing with solvents. Raman spectroscopy and 1H NMR were used to identify the extracted lipids as triacylglycerols (TAGs).
The fluid substance adhering to the collagen fibrils can be washed off with non-polar solvents (hexane, heptane) without changing the morphology of the fibrils (Fig. 1(b) and (d)), suggesting that it is composed of hydrophobic lipids. For Raman and 1H NMR spectroscopic analysis, a calcaneal tendon was cut into smaller pieces and washed with a 2![[thin space (1/6-em)]](https://www.rsc.org/images/entities/char_2009.gif) :
:![[thin space (1/6-em)]](https://www.rsc.org/images/entities/char_2009.gif) 1 (v/v) mixture of dichloromethane and methanol (DCM/MeOH), a lipid extraction procedure. The Raman spectrum of the extracted substance is characteristic of TAGs, as the comparison with pure triolein, a TAG with three identical alkyl chains, and Raman spectra reported in the literature25,26 reveals (Fig. 2(a) and (b)). TAGs are the most abundant form of glycerolipids, which display a large variation in length and number of alkyl chains, as well as in the number and the position of C
1 (v/v) mixture of dichloromethane and methanol (DCM/MeOH), a lipid extraction procedure. The Raman spectrum of the extracted substance is characteristic of TAGs, as the comparison with pure triolein, a TAG with three identical alkyl chains, and Raman spectra reported in the literature25,26 reveals (Fig. 2(a) and (b)). TAGs are the most abundant form of glycerolipids, which display a large variation in length and number of alkyl chains, as well as in the number and the position of C![[double bond, length as m-dash]](https://www.rsc.org/images/entities/char_e001.gif) C double bonds within the alkyl chains. The details depend on tissue type and species.10,15,27,28 Therefore, we measured Raman spectra of three reference compounds: triolein with three identical alkyl chains (Fig. 2(b)), 1,3-diolein with two identical alkyl chains, and monocaprin with only one, saturated alkyl chain. The Raman spectrum of 1,3-diolein is very similar to that of triolein (Fig. S1, SI), but the detailed shape of the carbonyl vibrational band ν(C
C double bonds within the alkyl chains. The details depend on tissue type and species.10,15,27,28 Therefore, we measured Raman spectra of three reference compounds: triolein with three identical alkyl chains (Fig. 2(b)), 1,3-diolein with two identical alkyl chains, and monocaprin with only one, saturated alkyl chain. The Raman spectrum of 1,3-diolein is very similar to that of triolein (Fig. S1, SI), but the detailed shape of the carbonyl vibrational band ν(C![[double bond, length as m-dash]](https://www.rsc.org/images/entities/char_e001.gif) O) differs markedly from those of triolein and monocaprin (see the inset in Fig. 2(a)). Furthermore, monocaprin is crystalline at ambient temperature, resulting in sharper peaks in the Raman spectrum (Fig. S1(a), SI). Thus, Raman spectroscopy shows that TAGs are the major component of the substance extracted from tendon tissue with DCM/MeOH. 1H NMR spectroscopy confirms this finding. The majority of the NMR signal originates from TAGs, as the comparison with the NMR spectrum of triolein shows (Fig. 2(c)). The minor signals present in the NMR signal of lipids extracted from tendon and marked with an asterisk (*) are attributed to other natural lipids according to previous work on the chemical composition of lipids in tendons, ligaments, and joints.15
O) differs markedly from those of triolein and monocaprin (see the inset in Fig. 2(a)). Furthermore, monocaprin is crystalline at ambient temperature, resulting in sharper peaks in the Raman spectrum (Fig. S1(a), SI). Thus, Raman spectroscopy shows that TAGs are the major component of the substance extracted from tendon tissue with DCM/MeOH. 1H NMR spectroscopy confirms this finding. The majority of the NMR signal originates from TAGs, as the comparison with the NMR spectrum of triolein shows (Fig. 2(c)). The minor signals present in the NMR signal of lipids extracted from tendon and marked with an asterisk (*) are attributed to other natural lipids according to previous work on the chemical composition of lipids in tendons, ligaments, and joints.15
|  | ||
| Fig. 2  (a) Raman spectra of lipids from chicken calcaneal tendon (blue) and triolein (red). Vibrational bands are assigned according to the literature.25,26 Inset: Carbonyl stretching vibration ν(C ![[double bond, length as m-dash]](https://www.rsc.org/images/entities/char_e001.gif) O) for lipids from tendon (L) and the reference compounds monocaprin (1), 1,3-diolein (2), and triolein (3). (b) Molecular structure of triolein. (c) 1H NMR spectra of lipids from tendon and triolein in CDCl3. Peaks A1 to J correspond to triolein29,30 and are also found in the spectrum of lipids extracted from tendon. Peaks marked with S are due to residual solvents.31 See Fig. S2 (SI) for a more detailed assignment of peak positions. | ||
Thermodynamically, TAGs and collagen fibrils constitute two coexisting phases. Inspired by the Flory–Huggins theory of polymer solutions and the thermodynamics of binary mixtures, we expect the fibrils to contain a small amount of TAGs. Based on our methodology for 3D depth profiling fluid polymer solutions22 and collagen fibrils with AFM,23 we designed an analytical protocol to measure the amount of TAGs in individual collagen fibrils: we first dissolved the lipids surrounding the fibrils using the non-polar solvent hexane. In the second step, we used a 2![[thin space (1/6-em)]](https://www.rsc.org/images/entities/char_2009.gif) :
:![[thin space (1/6-em)]](https://www.rsc.org/images/entities/char_2009.gif) 1 v/v mixture of the polar solvents DCM/MeOH to dissolve the lipids that are embedded within the collagen fibrils (Fig. 3(a)). The DCM/MeOH mixture resembles the classic chloroform/MeOH mixture used by Folch and coworkers32,33 and Bligh and Dyer,34 which is commonly used for lipid extraction. However, DCM is less toxic than chloroform.35 The water miscibility and hydrogen-bonding ability of MeOH is required in order to split lipid–protein complexes in the sample.10 Hexane is a common solvent used to extract natural oils and fats,36 which are primarily composed of TAGs. This shows that TAGs are soluble in hexane and the DCM/MeOH mixture. Moreover, the solvents are applied in excess. The solubility of hexane in water is very low (9.5 mg L−1).37 Thus, we suppose that hexane does not diffuse into the polar collagen fibrils.
1 v/v mixture of the polar solvents DCM/MeOH to dissolve the lipids that are embedded within the collagen fibrils (Fig. 3(a)). The DCM/MeOH mixture resembles the classic chloroform/MeOH mixture used by Folch and coworkers32,33 and Bligh and Dyer,34 which is commonly used for lipid extraction. However, DCM is less toxic than chloroform.35 The water miscibility and hydrogen-bonding ability of MeOH is required in order to split lipid–protein complexes in the sample.10 Hexane is a common solvent used to extract natural oils and fats,36 which are primarily composed of TAGs. This shows that TAGs are soluble in hexane and the DCM/MeOH mixture. Moreover, the solvents are applied in excess. The solubility of hexane in water is very low (9.5 mg L−1).37 Thus, we suppose that hexane does not diffuse into the polar collagen fibrils.
After each washing step, we measured the resulting changes in fibril cross-section, water content, and indentation modulus of each collagen fibril with AFM.22,23 The change in cross-sectional area yields the volume fraction of TAGs, fTAG, that was removed from each collagen fibril by washing with hexane and DCM/MeOH (Fig. 3). Because native collagen fibrils vary in diameter and mechanical properties,23,38,39 we examined a random sample of 40 fibrils taken from three tendons of three different chickens and measured 3D depth profiles of each fibril at the same fibril location after each washing step (Fig. S3 and S4).
In the 3D depth profiles that we reconstructed from the FD data (Fig. 1(c)), the regions of attractive forces (blue, corresponding to the liquid TAGs) and repulsive forces (red, corresponding to the solid collagen fibril and the solid substrate) can be distinguished. This allowed us to accurately measure the shape of the collagen fibril (the dS height profile, Fig. S4, SI) beneath the liquid TAGs that adhered to the fibrils. This yielded the cross-sectional area A0 in the dry state and the cross-sectional area A after washing with hexane and DCM/MeOH.
The volume fraction of material washed out of the fibril is the TAG volume fraction, fTAG = 1 − A/A0. The remaining area fraction f = A/A0 in the dry state after washing with DCM/MeOH was assigned to the volume fraction of collagen f = 0.906 ± 0.049 (mean ± SD, n = 40). This shows that the mean volume fraction of TAGs in collagen fibrils is 9% of the dry volume. Using the density40 and molecular mass14 of collagen (1.36 g cm−3 and 287 kDa) and that of triolein (0.908 g cm−3 and 885 Da), we found that fTAG corresponded to 20 ± 11 (mean ± SD) TAG molecules per tropocollagen molecule. This is an unexpectedly large number, and it also serves as an estimate of the solubility limit of TAGs in collagen fibrils, since an excess of TAGs remained on the fibrils after washing with H2O.
The volume fraction fW of free water in the collagen fibril was obtained from the ratio of the cross-sectional area of each fibril measured in humid and dry air (Fig. 4). After washing with water, fW decreases with increasing fTAG (Fig. 4). After washing with DCM/MeOH, this correlation is lost, and fW does not depend on fTAG. In tendon 1, with a change in relative humidity (RH) from 55% to 88%, fW = 0.23 ± 0.04 (mean ± SD, 16 fibrils, Fig. 4), and in tendon 2, with a change in RH from 5% to 95%, fW = 0.61 ± 0.08 (18 fibrils, Fig. S6 and S7, SI). This increase in volume with increasing RH agrees very well with the estimate of the water content in collagen fibrils40 and with drying/swelling measurements on macroscopic tendon specimens.9,41
To quantify fibril stiffness, which is a measure of the cohesive strength between tropocollagen molecules, we determined the effective indentation modulus E* from a fit of a modified Hertz contact model to FD data measured during tip approach (Fig. 5(a)) along the crest of each fibril. Examples of the regions of interest used to determine E* are shown in Fig. S5 (SI). The mean indentation modulus measured in humid air at 88% RH increases by a factor of 1.24 ± 0.019 (mean ± SD, n =16) after washing with hexane and by a factor of 1.79 ± 0.25 after washing with DCM/MeOH (Fig. 5(b)). An increase in E* is also observed at 55% RH. For fibrils from tendon 2, E* also increases after washing with DCM/MeOH (Fig. S7(b) and (c), SI). Reliable data on E* is unavailable for tendon 3 because the tip was very broad.
In summary, our washing experiment shows that TAGs occupy 9% of the dry volume of collagen fibrils (Fig. 3(b)). After dissolving TAGs from collagen fibrils with DCM/MeOH, the collagen fibrils take up more water in humid air (Fig. 4(b)), and their indentation modulus E* increases (Fig. 5(b)). This seemingly contradictory effect reveals the biomechanical function of TAGs: they act as plasticizers and limit the water content of native collagen fibrils. The proposed atomistic mechanism is that TAGs reduce the total number of hydrogen bonds and water-mediated hydrogen bonds between adjacent tropocollagen molecules42,43 and replace them with weaker van der Waals interactions between TAG alkyl chains and tropocollagen molecules. This reduces the cohesion between the tropocollagen molecules and the indentation modulus of the collagen fibrils.
Our finding prompts the question of how and where TAGs are incorporated in the collagen fibrils. The latter form a quasi-hexagonal lattice of tropocollagen triple helices surrounded by water molecules14,40 (Fig. 6), whereby water molecules and collagen side chains undergo liquid-like reorientations.44,45 TAGs from animal tissues are also liquid and disordered at room temperature. This may explain why the presence of TAGs in collagen fibrils has been overlooked, since the diffuse background present in the X-ray scattering data is subtracted prior to detailed analysis of the crystalline order.14,46 Long-chain alkanols were found to intercalate between tropocollagens, causing the type I collagen crystal lattice to expand.47 This intercalation was found to be reversible, suggesting physisorption of alkanols onto collagen molecules.47 We propose that TAGs intercalate into collagen fibrils in a similar manner. Egli et al.3,4 found that alkyl ligands of lipidized amino acids attach to the surface of collagen-like peptides in a hydrophobic groove. This increases the stability of the collagen-like peptide triple helix. Based on this, the non-polar alkyl chains of TAGs may align in the hydrophobic groove via hydrophobic interactions, and the carbonyl groups of TAGs may form hydrogen bonds with hydrogen bond donors (NH, NH2, and COH groups) located at the surface of tropocollagen molecules. The hydrophilic glycerol group of TAGs may also form hydrogen bonds with water molecules.
|  | ||
| Fig. 6 Proposed intercalation of TAGs (orange) into collagen fibrils (blue-gray). (a) Crystal structure of a 67 nm long segment of type I collagen fibril. (b) and (c) Cropped cross-sections in the gap and overlap regions with TAGs manually placed between tropocollagens. The rendering is based on X-ray diffraction data from Orgel et al.14 (PDB: 3HR2), and was created using ColBuilder48 and ChimeraX.49 | ||
The crystalline order of the collagen fibrils provides additional opportunities for TAG incorporation. The gap regions are less densely packed, with only four tropocollagens per unit cell, compared to five tropocollagens per unit cell in the overlap regions. The free lattice sites in the gap regions may provide space for TAGs. Indeed, transmission electron microscopy showed that liquid paraffin, refined wood oil, and other non-polar liquids can accumulate in the gap regions of collagen fibrils.50 In addition, the crystalline order in the plane perpendicular to the fibril axis is polycrystalline,46 and we suggest that TAGs may accumulate at grain boundaries.
![[thin space (1/6-em)]](https://www.rsc.org/images/entities/char_2009.gif) :
:![[thin space (1/6-em)]](https://www.rsc.org/images/entities/char_2009.gif) 1 v/v mixture of dichloromethane (DCM, ≥99.9%, CAS RN: 75-09-2, Sigma-Aldrich Chemie GmbH, Taufkirchen, Germany) and methanol (MeOH, ≥99.8%, CAS RN: 67-56-1, Thermo Fisher Scientific, Geel, Belgium) were used as solvents for lipids in native collagen fibrils. After washing the specimen with water and measuring the first set of FD data, the specimen was removed from the AFM and washed with hexane. This was done by placing a drop of hexane on the specimen and then removing the solvent by touching the edge of the drop with a paper tissue (Precision Wipes, Kimberly-Clark GmbH, Koblenz, Germany). This procedure was repeated 3–5 times until no lipid droplets were visible under an optical microscope with bright-field illumination. After measuring the second set of FD data, the same procedure was used to wash with DCM/MeOH (2
1 v/v mixture of dichloromethane (DCM, ≥99.9%, CAS RN: 75-09-2, Sigma-Aldrich Chemie GmbH, Taufkirchen, Germany) and methanol (MeOH, ≥99.8%, CAS RN: 67-56-1, Thermo Fisher Scientific, Geel, Belgium) were used as solvents for lipids in native collagen fibrils. After washing the specimen with water and measuring the first set of FD data, the specimen was removed from the AFM and washed with hexane. This was done by placing a drop of hexane on the specimen and then removing the solvent by touching the edge of the drop with a paper tissue (Precision Wipes, Kimberly-Clark GmbH, Koblenz, Germany). This procedure was repeated 3–5 times until no lipid droplets were visible under an optical microscope with bright-field illumination. After measuring the second set of FD data, the same procedure was used to wash with DCM/MeOH (2![[thin space (1/6-em)]](https://www.rsc.org/images/entities/char_2009.gif) :
:![[thin space (1/6-em)]](https://www.rsc.org/images/entities/char_2009.gif) 1 v/v) and a third set of FD data was measured. Triolein (98%, CAS RN: 122-32-7, Thermo Fisher Scientific, Geel, Belgium), 1,3-diolein (≥99%, CAS RN: 2465-32-9, Sigma-Aldrich Chemie GmbH, Taufkirchen, Germany), and monocaprin (>98%, CAS RN: 26402-22-2, TCI Europe N.V., Zwijndrecht, The Netherlands) were used as reference materials for Raman and 1H NMR spectroscopy.
1 v/v) and a third set of FD data was measured. Triolein (98%, CAS RN: 122-32-7, Thermo Fisher Scientific, Geel, Belgium), 1,3-diolein (≥99%, CAS RN: 2465-32-9, Sigma-Aldrich Chemie GmbH, Taufkirchen, Germany), and monocaprin (>98%, CAS RN: 26402-22-2, TCI Europe N.V., Zwijndrecht, The Netherlands) were used as reference materials for Raman and 1H NMR spectroscopy.
      
      
        All measurement steps were repeated with the specimen in humid air. The z-length was increased to 300 nm to account for a longer range of attractive capillary force at high relative humidity. After measuring the FD data in the humid state, a higher resolution IC mode image of 2048 × 2048 pixels was measured over an area of 50 × 50 μm. The specimen was then removed from the AFM and washed three times with hexane. After the solvent evaporated, the sample was placed back into the AFM and the exact same position was searched. We used an optical microscope with top-view optics to compare images before and after washing. Large bundles of collagen fibrils, located next to the individual fibrils, were used as characteristic landmarks to find the same spot and reposition the AFM cantilever on the region of interest. Then, we repeated the measuring procedure described above. The same force measurement scheme was used in dry and humid conditions. In a final step, the sample was washed with a mixture of DCM/MeOH, and all measurement steps were repeated.
|  | (1) | 
We note that collagen fibrils display an elastoplastic deformation behavior.53 Therefore, elastic contact models, like the Hertz model and related models, such as eqn (1), are not strictly applicable. Despite this limitation, the functional form of eqn (1) is commonly used for a phenomenological description of measured FD data.
![[thin space (1/6-em)]](https://www.rsc.org/images/entities/char_2009.gif) :
:![[thin space (1/6-em)]](https://www.rsc.org/images/entities/char_2009.gif) 1, v/v). To completely dissolve all lipids, we rinsed two to three times with 1 mL of the DCM/MeOH mixture. We concentrated the resulting solvent mixture and used it for further investigations with Raman and 1H NMR spectroscopy. With a glass pipette, we deposited a droplet of the solution (approximately 0.5–1 cm in diameter) on an Au-coated, polished Si wafer and allowed the solvent to evaporate. Triolein, diolein, and monocaprin droplets were prepared in the same way. Raman measurements were performed in backscattering geometry using a Horiba Xplora Plus setup equipped with a spectrometer comprising a 1200 lines per mm grating and an electron multiplying charge-coupled device (EMCCD) A DPSS 532 nm continuous wave (CW) laser was focused on the samples by an 80×, 0.75 NA objective. The excitation laser power was approximately 10 mW, measured under the objective. Raman peaks were assigned according to Motoyama25 and Czamara et al.26
1, v/v). To completely dissolve all lipids, we rinsed two to three times with 1 mL of the DCM/MeOH mixture. We concentrated the resulting solvent mixture and used it for further investigations with Raman and 1H NMR spectroscopy. With a glass pipette, we deposited a droplet of the solution (approximately 0.5–1 cm in diameter) on an Au-coated, polished Si wafer and allowed the solvent to evaporate. Triolein, diolein, and monocaprin droplets were prepared in the same way. Raman measurements were performed in backscattering geometry using a Horiba Xplora Plus setup equipped with a spectrometer comprising a 1200 lines per mm grating and an electron multiplying charge-coupled device (EMCCD) A DPSS 532 nm continuous wave (CW) laser was focused on the samples by an 80×, 0.75 NA objective. The excitation laser power was approximately 10 mW, measured under the objective. Raman peaks were assigned according to Motoyama25 and Czamara et al.26
      
      
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