Hana
Janeková
a,
Sergey
Fisher
b,
Tomáš
Šolomek
*b and
Peter
Štacko
*a
aDepartment of Chemistry, University of Zurich, Winterthurerstrasse 190, CH-8057 Zurich, Switzerland. E-mail: peter.stacko@uzh.ch
bVan't Hoff Institute for Molecular Sciences, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands. E-mail: t.solomek@uva.nl
First published on 11th November 2024
Near-infrared light-activated photocages enable controlling molecules with tissue penetrating light. Understanding the structural aspects that govern the photouncaging process is essential to enhancing their efficacy, crucial for practical applications. Here we explore the impact of thermodynamic stabilization on contact ion pairs in cyanine photocages by quaternarization of the carbon reaction centers. This strategy enables the first direct uncaging of carboxylate payloads independent of oxygen, resulting in a remarkable two-orders-of-magnitude enhancement in uncaging efficiency. Our computational analyses reveal that these modifications confer a kinetic instead of thermodynamic effect, reducing ion–ion interactions and allowing complete separation of free ions while inhibiting recombination. We demonstrate that, while thermodynamic stabilization is effective in traditional chromophores operating at shorter wavelengths, it rapidly reaches its thermodynamic limitations in NIR photocages by compromising the photocage stability in the dark. Thanks to these findings, we establish that activation of cyanine photocages is limited to wavelengths of light below 1000 nm. Our work illuminates the path to improving uncaging cross-sections in NIR photocages by prioritizing kinetic trapping and separation of ions.
Nevertheless, some of us37 and others38–40 have recently demonstrated that Cy7 fluorescent dyes can operate as successful photocages (Fig. 1A) with λmax exceeding 800 nm, although the observed quantum yields are generally low. Yet, a diverse array of payloads, including carboxylates, amines, phenols and thiols, masked as esters, carbonates and carbamates can be uncaged in biological settings via a competition of two mechanisms – photooxidation and photoheterolysis.37,41 Direct uncaging avoids dependence of uncaging efficiency on the levels of oxygen, particularly in hypoxic environments such as solid tumors. Unfortunately, a direct photoheterolysis of carboxylates (Fig. 1A) is negligible, i.e., the presence of oxygen to facilitate the photooxidation is inevitable for the release.37 The implementation of these Cy7 photocages in control of live human cardiomyocytes41 and concurrent delivery of payloads with a subcellular precision42 underscore their broad application potential. The recent success of the few NIR-activatable photocages inspires an enticing prospect to reach the short wave infrared window (SWIR, 1000–1500 nm), which would allow reaching unmatched resolution in space and time, and tissue-penetration depth.27 Bioimaging has recently pioneered the SWIR territory and showcased its potential by quantification of heartbeat, brain vasculature mapping and multiplexing in live animals.43–45 These significant advances beg the questions – can the current photouncaging approaches cross into the SWIR and what are the ultimate limits to reach such an accomplishment?46
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Fig. 1 (A) Schematic representation of release from Cy7 photocages, payload is depicted in yellow. (B) Schematic reaction coordinate diagram of the photorelease from Cy7 photocage. SM = starting material, CI = conical intersection, CIP = contact ion pair, CSE = cation stabilization energy (see the ESI† for details). (C) Concepts to increase uncaging performance in the published photocages. |
In this work, we explore the possibility to improve the Cy7 uncaging efficiency by manipulating the stability of the primary carbenium ion formed by heterolysis. Thereby, we achieved for the first time a clean direct uncaging of unmasked carboxylate from Cy7 photocage with a remarkable 100-fold enhancement of the uncaging efficiency. We show that the enhancement is a consequence of kinetic trapping of the primary carbenium ion. We further demonstrate that extending the stabilization strategy reaches the limits of practical use of the photoheterolysis in Cy7 photocages due to inherent thermodynamic boundaries. We discuss how this boundaries affect the available options to improve the uncaging efficiency of NIR photocages by molecular design and propose how to overcome these thermodynamic obstacles.
The payload release via heterolysis from the singlet excited (1S*) state of Cy7 and related photocages follows the simplified correlation diagram in Fig. 1B. An excited state barrier separates the 1S* minimum from its conical intersection (CI) with the ground state. At the CI, the excited state population branches toward formation of a contact ion pair (CIP) or the starting material (SM). Good nucleofuges in coumarin photocages follow the productive pathway to the CIP with >90% efficiency,33 that is, the branching ratio at the CI largely favors heterolysis with only small losses due to unproductive SM regeneration. The dynamics of the bond-breaking process suggests a similar scenario in all related photocage systems. However, a recombination of the primary CIP can have a detrimental effect on the ultimate payload release.14,34,35 In the absence of an efficient intersystem crossing, the excited state barrier and/or the ions separation from the CIP then determine Φrel.
Compound 1-H operated better via direct uncaging in O2-free conditions in the presence of a large excess of LiCl (100 mM), although still with only marginal efficacy,41 suggesting that interception of the CIP might improve the process. The state-of-the-art strategy to maximize the escape of the ions from the solvent cage is the thermodynamic stabilization of the primary photocage carbenium ion (Fig. 1C).50,51 Feringa, Szymański and co-workers demonstrated that a simple vinyl substitution at the meso-methylene carbon (Cmeso, see Fig. 1A) increases the efficiency of coumarin photocages by 16-fold, and they further showed that this strategy could be successfully extended to BODIPY photocages.50 Similar approach using phenyl at Cmeso of BODIPY photocages unexpectedly diminished the release efficiency, possibly due to sterical constrains preventing effective resonance stabilization.24 Recently, a strategy using β-silyl effect to increase performance of coumarin photocages has also been investigated.51 We first installed an additional methyl substituent to Cmeso in 1-Me to enhance the stability of carbenium ion 2. However, the modest cation stabilization energy (DFT:
CSE = 11 kcal mol−1, Tables 1, S1 and S2†) was insufficient to expedite the carboxylate release in O2-free conditions. We found no conclusive evidence of the release of FBA upon irradiation of 1-Me in MeOD (780 nm) under O2-free conditions for 16 hours. In fact, the photolysis showed virtually no conversion within this experimental window like in 1-H.37 We thus expected that replacing the extra methyl group for a phenyl ring would exert the necessary stabilization on the carbenium ion.
Photocage | λ abs (nm) | λ em (nm) | ε (cm−1 M−1) | Φ F | Φ rel , (×10−5) | (kcal mol−1) | CSEg (kcal mol−1) | Yield% |
---|---|---|---|---|---|---|---|---|
a Determined in MeOH. b Determined in PBS (10 mM, pH = 7.4, I = 100 mM, 20% DMSO). c Determined in CD3OD. d Data published in ref. 37. e Under O2-free conditions. f Under ambient conditions. g Cation/carbenium ion stabilization energy calculated with DFT using isodesmic reaction approach (Tables S1 and S2). h Quantum yield of FBA formation determined by 1H NMR spectroscopy, (see the ESI for details). i Heterolysis of pyridinium from Cy7 photocage in the S1 state, calculated by TD-DFT (0 K, see the ESI for details). n.d. = not determined. | ||||||||
1-H | 786b | 809 | 155![]() |
2.9 ± 0.7 | ∼0.15 | 1.3 | −4.8 | 3e (96 h) (51 ± 2b)f |
1-Me | 806a | 843 | 42![]() |
<2% | n.d. | 0.3 | −11.0 | n.d. (46 ± 2b)f |
1-Ph | 845a | 878 | 71![]() |
<2% | 13 ± 2 | 3.3 | −11.1 | 96 ± 1e (58 ± 3c)f |
1-Ar | 846a | n.d. | 49![]() |
n.d. | n.d. | 3.2 | −30.4 | n.d. |
Therefore, we synthesized photocage 1-Ph in five steps using the Zincke chemistry protocol (Scheme 1 and Table 1).52 Specifically, we reacted the 4-acetylpyridine with phenyl magnesium bromide providing alcohol 3c in 75% yield.53 In the next step, the FBA payload was installed in 69% yield by deprotonation of 3c with BuLi followed by a reaction with the 4-fluorobenzoyl chloride. The reaction of ester 4c with 2,4-dinitrophenyl tosylate in acetone yielded Zincke salt 5c which was subsequently transformed into the final photocage 1-Ph in 30% yield using heterocycle 6 and AcOK in EtOH. Due to its lipophilic nature, 1-Ph strongly aggregates in aqueous media (PBS with up to 50% DMSO as a co-solvent), and MeOH was therefore used in UV-vis spectroscopy studies. The absorption spectrum of 1-Ph with λmax = 845 nm is significantly broadened (Fig. 2D) even in MeOH, similar to 1-Me (ref. 37) and other dimethyl analogues reported by Feringa.38 We presume that the steric congestion at the reaction center breaks the chromophore symmetry, resulting in crossing the cyanine limit.54 Consequently, the absorption coefficients are lower (<80000 cm−1 M−1), which negatively impacts the uncaging cross section (εΦrel) and applications in multiplexed experiments that call for sharp and narrow spectra. Irradiation of 1-Ph in MeOD (820 nm, 25 mW cm−2) for 24 h under ambient conditions led to a complete loss of green color typical for cyanine dyes and a concurrent liberation of FBA observed by 1H and 19F NMR spectroscopies (ESI†). Complete destruction of cyanine chromophore is in line with our original report of 1O2-mediated photooxidation of Cy7 photocage followed by a solvolytic release of the payload.37 The mediocre chemical yield of the uncaging (∼60%, Table 1) in this case agrees well with previously observed values for structurally related photocages irradiated in the presence of O2. To our delight, exclusion of O2 revealed that the presence of Ph in 1-Ph does efficiently promote direct photoheterolysis, releasing the payload in excellent 98% chemical yield upon NIR irradiation (810 nm, Fig. 2F). The photolysis of 1-Ph yields a complex mixture of species instead of a defined cyanine photoproduct.
The Φrel of FBA from 1-Ph in O2-free conditions was determined to be (1.3 ± 0.2) × 10−4. To quantify the influence of the substitution, we calculated the Φrel enhancement χ as Φrel(1-Ph)/Φrel(1-H), which confirms the substantial improvement of uncaging with χ = (86 ± 13). Surprisingly, the estimate of the cation stabilization energy (CSE, Table 1) suggests that the replacement of methyl in 1-Me for phenyl in 1-Ph did not markedly affect the energy of the corresponding carbenium ion 2-Ph. The ions 2-Me and 2-Ph are both more stable than that derived from 1-H by ∼6 kcal mol−1. Therefore, we investigated (TD-DFT) whether the substitution affected the shape of the 1S* potential energy surface decreasing the barrier for heterolysis rather than stabilizing the CIP. Formation of the CIP by photoheterolysis of Cy7 photocages leads to separation of charges between the forming carbenium ion and the conjugate base of the payload. Previous computational works describing the shape of the 1S* potential energy surfaces in Cy7 and related photocages using TD-DFT suffer from insufficient mitigation of the associated Coulomb penalty by inaccurate treatment of solvation. Therefore, they provide unrealistic reaction barriers that are insurmountable within the excited state lifetime of the photocages, making comparisons unreliable.23,38,50 Description of such a process requires involvement of explicit solvent molecules, which, unfortunately, renders the calculations computationally intractable. For this reason, we employed here a computational protocol that helped us develop the first BODIPY photocage that permitted uncaging large biomolecules in high vacuum.55 Briefly, the charge neutral payload is replaced by a pyridinium ion with a pKa value close to that of benzoic acid. Photoheterolysis of such pyridinium photocage then shifts the positive charge from the payload to the ensuing primary carbenium ion 2, avoiding charge separation (see Scheme S1†). As a result, this method does not severely suffer from neglecting the solvation and allows to compare a series of potential energy profiles for the same chromophore with different substituents on Cmeso.
The relaxed potential energy scans for 1-H, 1-Me and 1-Ph obtained by stretching the Cmeso–Npy bond (Fig. S17–S20†) revealed the corresponding reaction barrier after its extension by ∼0.4 Å. The energy then decreases, and the energy surfaces correctly lead to the S1/S0 CI eventually forming the CIP. Due to absence of the Coulomb penalty, the energies of the computed transition states (Table 1) are markedly lower than in the previous reports.23,38,50 For example, an estimate of Φrel for 1-H based on the computed barrier and ignoring CIP recombination predicts Φrel values of ∼10−1 suggesting that the method rather underestimates the barriers by a few kcal mol−1 (see the ESI† for details). Nevertheless, replacement of methyl in 1-Me for phenyl in 1-Ph did not lower but increased the energy of the computed transition state. We thus tested the effect by pushing the stabilization further with a strong electron-donating methoxy substituent (σ+ = −0.78, CSE = 30 kcal mol−1) in the phenyl para-position as in 1-Ar. We found out that the computed barriers for 1-Ph and 1-Ar were similar. All the optimized transition states (Fig. S16†) are relatively early with only a fraction of the positive charge developing on Cmeso (Table S4†). Therefore, the employed substituents cannot develop their thermodynamic stabilization to the full extent experienced in the carbenium ions. In addition, the steric bulk of the aryl substituents appears to contribute to the larger barriers. As a result, the enhancement χ observed for 1-Ph must arise from an effect on the CIP. Inspection of the optimized geometries of the carbenium ions (Fig. 3 and S15†) reveals that those with the aryl substituents differ substantially from 2-Me.
The methyl and aryl groups are perpendicular to the Cy7 chromophore in 2-Ph and 2-Ar due to the steric clash with the four methyl groups in the Cy7 heterocycles. Although they may resemble classical closed-shell 1-arylethan-1-yl carbenium ions, they are diradicaloid in nature56 and are markedly less stable (Table S5†). Because the calculated CSEs of 2-Me and 2-Ph are nearly identical, the effect that enhances the Φrel must rather be kinetic than thermodynamic, i.e., the observed rotation likely disrupts the CIP and spatially separates the ions. It is evident by comparing the relative stabilities of 2-Ph and 2-Ar (ΔCSE = 19 kcal mol−1) that such separation does not fully dissociate the ions. They must stay loosely connected upon photoheterolysis, otherwise this process in 1-Ph would be endothermic (see below). The potential energy surface of the Cmeso rotation with respect to Cy7 π-system is relatively soft (<5 kcal mol−1 by 75°, Fig. S21†) and allows to accommodate the ion of the released payload within a loose CIP to gain extra Coulomb energy. We argue that the dissociation of such looser CIP prevents regeneration of SM that is detrimental to the Φrel. Following the rotation coordinate further allowed us to discover a product of 2-Ph rearrangement with comparable energy (1.9 kcal mol−1, Fig. S21†). Such rearrangement can explain the formation of complex mixture of products observed by uncaging of FBA from 1-Ph in the absence of O2.
In line with our observations, we decided to experimentally probe the additional stabilization in the carbenium ion 2-Ar to see whether a combination of the kinetic and thermodynamic effects can further boost the uncaging efficiency. The synthesis of 1-Ar paralleled that of 1-Ph, but isolation of the compound manifested the limits of the strategy already in the synthetic stage (Scheme 1). Even after extensive and strenuous purification, 1-Ar underwent spontaneous and clean elimination to alkene as evidenced by 1H NMR and HRMS spectroscopies (ESI†). The reaction was accompanied by a significant blue shift of the absorption maxima (∼40 nm) congruent with the formation of a cross conjugated system (Fig. 2B). The compromised thermal stability of 1-Ar precluded its in-depth photophysico-chemical investigation. Instead, we opted for an Eyring analysis of the thermal process (Fig. 2C), which uncovered the activation barrier of ΔG‡ = 24.0 kcal mol−1 (25 °C, ΔH‡ = 23.1 kcal mol−1, ΔS‡ = −2.9 e.u.), corresponding to a half-life of ∼12 h. The observed negative ΔS‡ is consistent with the data on benzylchloride solvolysis which proceeds via SN1 mechanism.57
The relatively low Φrel of NIR photocages and the short thermal half-life of 1-Ar in solution represent a clear practical limit of the strategies that aim at enhancing the uncaging efficiency by thermodynamic stabilization of the carbenium ion in CIP as we correctly predicted previously46 and confirmed here. Synthetic availability of these scaffolds bearing a quaternary reaction center is also a concern. Installation of payload in 1-Ph required harsh conditions – a reaction of an acyl chloride with in situ generated alkoxide. In addition, we were unable to install other payloads such as carbonates or carbamates due to immediate elimination in the early stage of the synthesis.
Footnotes |
† Electronic supplementary information (ESI) available. See DOI: https://doi.org/10.1039/d4sc07165d |
‡ In fact, the maximum uncaging wavelength we provide here is overestimated. To avoid rapid thermal release of a payload, the solvolysis at 37 °C should be ∼10-fold slower than the one in 1-Ar (t1/2 ∼ 12 h at 25 °C) to permit practical synthesis, handling, administration and biodistribution of the photocage. This gives activation barrier ΔG‡ = 26.5 kcal mol−1 (t1/2 ∼ 6 days) and a minimum S1 energy of 30.5 kcal mol−1, which corresponds to the maximum uncaging wavelength <940 nm. |
§ 1-Ar is highly solvolytically (and likely photochemically) unstable. It was not possible to obtain an emission spectrum of 1-Ar; we observed a blue-shifted emission that likely comes from 7 (or a mixture of 7 and 1-Ar). Therefore, we calculated energy of S1 state for 1-Ph and expect it is the same (or very similar) for both 1-Ph and 1-Ar. |
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