Open Access Article
Tuyen Ngoc Truong
a,
Em Canh Pham
ab,
Ngoc-Vi Nguyen Tranc,
Phu Thien Tieua,
My Hanh Thi Caoa,
Tuoi Thi Hong Doa and
Khanh N. B. Le
*a
aSchool of Pharmacy, University of Medicine and Pharmacy at Ho Chi Minh City, Ho Chi Minh City, 700000, Vietnam. E-mail: lnbkhanh@ump.edu.vn
bFaculty of Pharmacy, Hong Bang International University, Ho Chi Minh City, 700000, Vietnam
cFaculty of Pharmacy, Uppsala University, Uppsala, 75105, Sweden
First published on 22nd August 2025
A series of 3-methylenamino-4(3H)-quinazolone derivatives were synthesized by imine formation reactions of 3-amino-6-chloro-2-phenyl-4(3H)-quinazolone with various substituted aromatic aldehydes at 80 °C for 1–3 hours using the reflux method. Twenty 3-methylenamino-4(3H)-quinazolone derivatives were synthesized with good to excellent yields (66 to 90%). Compound 5 (2-chloro-6-fluorobenzylidene) exhibited good cytotoxic activity against the RD cell line with an IC50 value of 14.65 μM but exhibited weak cytotoxic activity against the MDA-MB-231 cell line (IC50 = 147.70 μM) compared to the reference drug paclitaxel (PTX, IC50 RD = 0.58 μM and IC50 MDA-MB-231 = 0.04 μM). Meanwhile, compounds 6 (benzo[d][1,3]dioxol-5-ylmethylene) and 7 (4-bromo-2-hydroxybenzylidene) showed good cytotoxic activity against MDA-MB-231 with IC50 values of 10.62 and 8.79 μM, respectively. However, these compounds showed weak cytotoxic activity against the RD cell line (IC50 = 50–55 μM). In particular, potential compounds 5, 6, and 7 exhibited weak cytotoxic activity against the normal cell line LLC-PK1 (IC50 = 34.82–60.18 μM) compared to the highly toxic agent PTX (IC50 = 1.31 μM). Furthermore, compounds 5, 6, and 7 showed strong interactions with the EGFR target with binding affinities of −9.6, −10.1, and −9.8 kcal mol−1, respectively, compared to reference drug Gefitinib (−7.8 kcal mol−1). The in silico ADMET results suggested that these potent derivatives possess a good ADMET profile. Therefore, these three compounds are potential candidates for novel cancer drug development, as demonstrated by in vitro and in silico studies.
In many research works, scientists have made efforts to improve the reactions to form 4(3H)-quinazolone heterocycles to evaluate or screen biological activities and discover active mechanisms. Many derivatives have shown potent anticancer properties.25–34 In addition, the 4(3H)-quinazolone nucleus has many sites that can attach different substituents, especially at positions 2, 3, 6, and 7, from which many new derivatives with good biological effects can be created.25–34 Moreover, the N-methylenamino substituent at position 3 can increase the anticancer activity of 4(3H)-quinazolone derivatives (Fig. 2).12,15 However, research on 4(3H)-quinazolone derivatives with different substituents at position 3 (different N-methylenamino groups/N–N
C–R), 6-chloro, and 2-phenyl group is still limited, especially in terms of anticancer activity. Therefore, the study aimed to synthesize 3-arylmethylenamino-2-phenyl-4(3H)-quinazolone derivatives for anticancer activity screening, as well as molecular docking and in silico ADMET studies of potential active derivatives to create a scientific basis for the development of new cancer drugs.
In the second step, Q0 reacts with hydrazine hydrate, in the presence of sulfuric acid and PPA as cyclization and dehydration catalysts, forming 3-amino-6-chloro-2-phenyl-4(3H)-quinazolone (1). The reaction proceeded for approximately 3–4 hours, yielding 66%. In other studies, the absence of 6-chloro substitution led to higher yields (around 88%), even in the absence of cyclization catalysts.19 This suggests that the introduction of a 6-chloro substituent interferes with the cyclization process.
Finally, from 3-amino-6-chloro-2-phenyl-4(3H)-quinazolone (1), imine formation was carried out, yielding 20 derivatives (2–21) with good yields (66–90%) (Table 1). Imine formation is generally conducted in acidic solvents (glacial acetic acid, ethanol, etc.) (Scheme 1). Meanwhile, 3-amino-6-chloro-2-phenyl-4(3H)-quinazolone (1) is unstable in acidic aqueous solution at high temperatures. Attempts have been made to seek an appropriate condition to maintain the integrity of the quinazolinone ring while forming the imine derivatives. Absolute ethanol was selected as the solvent, and the reaction was done at 80 °C for 1–3 hours. The reaction time and yield depended on the type, number, and position of substituents on the phenyl ring. Higher yields and shorter reaction times were observed with derivatives containing electron-donating groups, two substituents, and para- or ortho-substitutions.
Spectra investigation by FT-IR, MS, 1H NMR, and 13C NMR has confirmed the molecular structure of the synthesized compounds Q0, 1–21. Stretching frequency in FT-IR spectra within the region 3380–3450 cm−1 due to C
N was observed, and that between 1660–1692 cm−1 indicated C
O of quinazolinone. In several mass spectra, ion peaks with a relative ratio of 7
:
3 could be encountered, which are aligned with the presence of chlorine (35Cl and 37Cl in a ratio of 3
:
1) in all structures. Additionally, ion peaks of 274 m/z have been regularly seen in curated MS spectra. The structure with a molecular mass of 274 m/z was predicted as in Fig. 3, given that the C
N imine and N3–C4 bonds are less stable and more likely to cleave during the fragmentation.
| Entry | Compound | RD | MDA-MB-231 | LLC-PK1 |
|---|---|---|---|---|
| a Mean ± SD, PTX – paclitaxel, RD – rhabdomyosarcoma cell line, MDA-MB-231 – human breast cancer cell line, LLC-PK1 – pig kidney-derived cell line. | ||||
| 1 | 2 | 151.23 ± 2.06 | 104.33 ± 3.63 | 114.73 ± 9.50 |
| 2 | 3 | 246.33 ± 24.26 | 91.50 ± 1.47 | 336.70 ± 24.67 |
| 3 | 4 | 235.20 ± 8.29 | 21.61 ± 1.11 | 86.66 ± 1.95 |
| 4 | 5 | 14.65 ± 0.68 | 147.70 ± 5.64 | 46.39 ± 2.06 |
| 5 | 6 | 54.48 ± 0.81 | 10.62 ± 0.67 | 60.18 ± 1.17 |
| 6 | 7 | 51.61 ± 1.19 | 8.79 ± 0.34 | 34.82 ± 0.27 |
| 7 | 8 | 198.43 ± 18.90 | 100.80 ± 3.75 | 62.84 ± 3.67 |
| 8 | 9 | 253.53 ± 14.23 | 84.41 ± 1.26 | 320.93 ± 4.31 |
| 9 | 10 | 430.03 ± 72.90 | 85.55 ± 2.32 | 341.50 ± 29.25 |
| 10 | 11 | 251.30 ± 25.50 | 99.44 ± 1.76 | 264.33 ± 31.89 |
| 11 | 12 | 126.43 ± 6.20 | 321.47 ± 51.82 | 350.53 ± 56.08 |
| 12 | 13 | 129.53 ± 10.39 | 138.90 ± 4.04 | 461.73 ± 49.45 |
| 13 | 14 | 135.73 ± 16.98 | 262.07 ± 43.92 | 326.47 ± 18.18 |
| 14 | 15 | 38.59 ± 1.07 | 56.60 ± 5.37 | 154.37 ± 3.54 |
| 15 | 16 | 82.33 ± 1.99 | 300.77 ± 27.11 | 148.97 ± 5.50 |
| 16 | 17 | 376.23 ± 8.08 | 194.50 ± 8.83 | 136.17 ± 8.14 |
| 17 | 18 | 84.81 ± 9.35 | 328.90 ± 47.24 | 176.87 ± 3.22 |
| 18 | 19 | 51.09 ± 0.99 | 37.50 ± 0.63 | 75.70 ± 3.01 |
| 19 | 20 | 48.10 ± 3.97 | 198.27 ± 13.27 | 279.43 ± 29.14 |
| 20 | 21 | 142.57 ± 12.69 | 120.60 ± 9.35 | 302.90 ± 38.82 |
| 21 | PTX | 0.58 ± 0.01 | 0.04 ± 0.02 | 1.31 ± 0.05 |
Compounds 2–4 and 8–21 exhibited weak to moderate cytotoxic activity against two cancer cell lines RD (38.59–430.03 μM) and MDA-MB-231 (21.61–328.90 μM), compared to the reference drug PTX (IC50 RD = 0.58 μM and IC50 MDA-MB-231 = 0.04 μM). Compound 5 (2-chloro-6-fluorobenzylidene) exhibited good cytotoxic activity against RD with an IC50 value of 14.65 μM but exhibited weak cytotoxic activity against MDA-MB-231 with an IC50 value of 147.70 μM. In contrast, compounds 6 (benzo[d][1,3]dioxol-5-ylmethylene) and 7 (4-bromo-2-hydroxybenzylidene) showed good cytotoxic activity against MDA-MB-231 with IC50 values of 10.62 and 8.79 μM, respectively. However, these two compounds exhibited weak cytotoxic activity (IC50 = 50–55 μM) against the RD cell line. Notably, three potential compounds 5, 6, and 7 exhibited weak cytotoxic activity against the normal cell line LLC-PK1 (IC50 = 34.82–60.18 μM), while the reference drug PTX exhibited strong cytotoxicity against LLC-PK1 with an IC50 of 1.31 μM. These results showed that potential compounds 5, 6, and 7 showed selective cytotoxic activity on cancer cell lines. Therefore, these compounds are promising for further research for the development of new cancer therapeutic agents.
Several 6-substituted 4(3H)-quinazolone and chloro-4(3H)-quinazolone derivatives have been demonstrated to have potential cytotoxic activity. The 6-methyl-4(3H)-quinazolone derivative with 2-thio (amide) and 3-phenyl substituents showed IC50 values of approximately 20 μg mL−1 and exhibited stronger inhibitory activity against HT-29 (72%) and SW620 (63.3%) cell lines than fluorouracil (34.1% for HT-29 and 57.3% for SW620).13 Meanwhile, the 6-methyl-4(3H)-quinazolone derivative with 2-thio (ester) and 3-(4-fluorophenyl) substituents exhibited strong cytotoxic activity against A549, MDA-MB231, and HeLa cell lines with IC50 values of 0.57, 1.19, and 1.26 mM, respectively.14 In addition, the 7-chloro-4(3H)-quinazolone derivative showed antitumor activity against murine leukemia L-1210 cell line and human leukemia K-562 and HL-60 cell lines.10 The 6-fluoro-4(3H)-quinazolone derivative with 2-methyl and 3-phenyl substituents showed potential antitumor activity against MCF-7 (IC50 = 3.42 μM) and NCI (IC50 = 2.51 μM) cell lines.11 Furthermore, the 6-fluoro-4(3H)-quinazolone derivative with a 2,3-diphenyl substituent showed potential antitumor activity with high percentage inhibition against MCF-7 (97.5%) and HepG2 (94.6%) cell lines at a concentration of 25 μmol for 48 h.12 The present study also demonstrated that 6-chloro-4(3H)-quinazolone derivatives have good and selective anticancer activity. The attachment of small substituents (halogen) at position 6 and large substituents (aromatic) at position 3 in the 4(3H)-quinazolone scaffold may be responsible for the potential and selective anticancer activity of these derivatives.
| Parameter | 5 | 6 | 7 | PTX | GEF | |||||
|---|---|---|---|---|---|---|---|---|---|---|
a According to literature report, PTX – paclitaxel, GEF – Gefitinib, Caco-2 permeability (optimal: higher than −5.15 log unit), MDCK permeability (low permeability: < 2 × 10−6 cm s−1, medium permeability: 2–20 × 10−6 cm s−1, high passive permeability: >20 × 10−6 cm s−1), PAMPA – the experimental data for Peff was logarithmically transformed (log Peff < 2: low-permeability, log Peff > 2.5: high-permeability), Pgp – P-glycoprotein, HIA – Human Intestinal Absorption (−: ≥30%, +: <30%), F: bioavailability (+: <percent value, −: ≥percent value), PPB: Plasma Protein Binding (optimal: <90%), VD: Volume Distribution (optimal: 0.04–20 L kg−1), BBB: Blood–Brain Barrier Penetration, Fu: The fraction unbound in plasms (low: <5%, middle: 5–20%, high: >20%), CL: clearance (low: <5 mL min−1 kg−1, moderate: 5–15 mL min−1 kg−1, high: >15 mL min−1 kg−1), T1/2 (ultra-short half-life drugs: 0.5 ≤ 1 h; short half-life drugs: 1–4 h; intermediate short half-life drugs: 4–8 h; long half-life drugs: >8 h), hERG blockers (IC50 ≤ 10 μM or ≥50% inhibition at 10 μM were classified as hERG +, IC50 > 10 μM or <50% inhibition at 10 μM were classified as hERG), DILI: Drug-Induced Liver Injury, Rat Oral Acute Toxicity (0: low-toxicity > 500 mg kg−1, 1: high-toxicity < 500 mg kg−1), FDAMDD – Maximum Recommended Daily Dose, BCF – Bioconcentration Factors, IGC50 – tetrahymena pyriformis 50 percent growth inhibition concentration, LC50FM – 96 h fathead minnow 50 percent lethal concentration, LC50DM – 48 h daphnia magna 50 percent lethal concentration. The output value is the probability of being inhibitor/substrate/active/positive/high-toxicity/sensitizer/carcinogens/corrosives/irritants (category 1) or non-inhibitor/non-substrate/inactive/negative/low-toxicity/non-sensitizer/non-carcinogens/noncorrosives/nonirritants (category 0). For the classification endpoints, the prediction probability values are transformed into six symbols: 0–0.1(−−−), 0.1–0.3(−−), 0.3–0.5(−), 0.5–0.7(+), 0.7–0.9(++), and 0.9–1.0(+++). Additionally, the corresponding relationships of the three labels are as follows: E – excellent, M – medium, P – poor. |
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| Physical chemistry | ||||||||||
| Molecular weight (g mol−1) | 412.24 | 403.82 | 454.70 | 853.91 | 446.90 | |||||
| nHA | 4 | 5 | 4 | 14 | 7 | |||||
| nHD | 0 | 0 | 1 | 4 | 1 | |||||
| nRot | 3 | 3 | 3 | 15 | 8 | |||||
Log Po/w (XLOGP3) |
5.52 | 4.61 | 5.13 | 3.66 | 4.11 | |||||
Log Po/w (WLOGP) |
5.81 | 4.33 | 5.07 | 3.41 | 4.32 | |||||
Log Po/w (MLOGP) |
5.58 | 4.24 | 4.75 | 1.7 | 2.82 | |||||
| TPSA | 47.25 | 65.71 | 67.48 | 221.29 | 68.74 | |||||
Log S (SILICOS-IT) |
−8.96 | −7.83 | −8.30 | −8.80 | −7.94 | |||||
| Solubility/H2O (mg mL−1) | 4.52 × 10−7 | 6.04 × 10−6 | 2.27 × 10−6 | 1.34 × 10−6 | 5.14 × 10−6 | |||||
| Molar refractivity | 110.85 | 111.95 | 115.61 | 218.96 | 121.66 | |||||
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| Druglikeness | ||||||||||
| Lipinski | Yes | Yes | Yes | No | Yes | |||||
| Ghose | No | Yes | Yes | No | Yes | |||||
| Veber | Yes | Yes | Yes | No | Yes | |||||
| Egan | Yes | Yes | Yes | No | Yes | |||||
| Muegge | No | Yes | No | No | Yes | |||||
| Bioavailability score | 0.55 | 0.55 | 0.55 | 0.17 | 0.55 | |||||
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| Absorption | ||||||||||
| Caco-2 permeability | −4.646 | E | −4.871 | E | −4.836 | E | −5.904 | P | −4.911 | E |
| MDCK permeability | 0 | E | 0 | E | 0 | E | 0 | E | 0 | E |
| PAMPA | −−− | E | −−− | E | −−− | E | +++ | P | ++ | P |
| Pgp-inhibitor | +++ | P | +++ | P | +++ | P | − | M | − | M |
| Pgp-substrate | −−− | E | −−− | E | −−− | E | +++ | P | +++ | Pa |
| HIA | −−− | E | −−− | E | −−− | E | −−− | P | −−− | E |
| F20% | −−− | E | −−− | E | −−− | E | ++ | P | −−− | E |
| F30% | −−− | E | −−− | E | −−− | E | +++ | P | −−− | E |
| F50% | −−− | E | − | E | −−− | E | +++ | P | −−− | E |
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| Distribution | ||||||||||
| PPB (%) | 98.80 | P | 98.70 | P | 98.60 | P | 92.60 | P | 89.40 | E |
| VDss (L kg−1) | 0.71 | E | 0.969 | E | 0.995 | E | 1.025 | E | 2.565 | E |
| BBB penetration | − | M | ++ | P | −−− | E | −−− | E | −−− | E |
| Fu (%) | 0.70 | P | 0.90 | P | 1.00 | P | 7.00 | E | 10.50 | E |
| OATP1B1 inhibitor | ++ | P | − | M | + | M | +++ | P | +++ | P |
| OATP1B3 inhibitor | ++ | P | +++ | P | +++ | P | +++ | P | +++ | P |
| BCRP inhibitor | −−− | P | −−− | P | −−− | P | −−− | P | +++ | P |
| MRP1 inhibitor | −−− | E | −−− | E | −−− | E | +++ | P | +++ | P |
| BSEP inhibitor | +++ | P | +++ | P | +++ | P | − | P | +++ | P |
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| Metabolism | ||||||||||
| CYP1A2 inhibitor | +++ | +++ | +++ | −−− | − | |||||
| CYP1A2 substrate | +++ | +++ | −−− | −−− | − | |||||
| CYP2C19 inhibitor | +++ | +++ | +++ | −−− | −−− | |||||
| CYP2C19 substrate | −−− | −−− | −−− | −−− | + | |||||
| CYP2C9 inhibitor | +++ | +++ | +++ | −−− | −−− | |||||
| CYP2C9 substrate | ++ | +++ | − | −−− | −−− | |||||
| CYP2D6 inhibitor | −−− | +++ | − | −−− | +++ | |||||
| CYP2D6 substrate | −−− | −− | −−− | −−− | +++ | |||||
| CYP3A4 inhibitor | −−− | +++ | −−− | −−− | + | |||||
| CYP3A4 substrate | −− | −−− | −−− | +++ | +++ | |||||
| CYP2B6 inhibitor | −−− | + | −− | +++ | − | |||||
| CYP2B6 substrate | −−− | −−− | −−− | −−− | −−− | |||||
| CYP2C8 inhibitor | +++ | +++ | +++ | +++ | +++ | |||||
| HLM stability | −−− | P | −−− | P | −− | P | + | M | +++ | E |
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| Excretion | ||||||||||
| CLplasma (mL min−1 kg−1) | 3.227 | E | 2.356 | E | 2.55 | E | 3.15 | E | 6.422 | M |
| T1/2 | 1.296 | 1.032 | 1.212 | 2.485 | 0.844 | |||||
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| Toxicity | ||||||||||
| hERG blockers | 0.315 | M | 0.404 | M | 0.031 | E | 0.022 | E | 0.899 | P |
| hERG blockers (10 μm) | 0.723 | P | 0.714 | P | 0.246 | E | 0.094 | E | 0.702 | P |
| DILI | 0.996 | P | 0.994 | P | 1 | P | 1 | P | 0.971 | P |
| AMES toxicity | 0.841 | P | 0.889 | P | 0.913 | P | 0.999 | P | 0.608 | M |
| Rat oral acute toxicity | 0.395 | M | 0.244 | E | 0.076 | E | 0.899 | P | 0.736 | P |
| FDAMDD | 0.789 | P | 0.893 | P | 0.945 | P | 0.998 | P | 0.647 | M |
| Skin sensitization | 0.896 | P | 0.931 | P | 0.985 | P | 1 | P | 0.458 | M |
| Carcinogenicity | 0.759 | P | 0.955 | P | 0.979 | P | 0.087 | E | 0.678 | M |
| Eye corrosion | 0 | E | 0 | E | 0 | E | 0 | E | 0 | E |
| Eye irritation | 0.361 | M | 0.363 | M | 0.976 | P | 0 | E | 0.152 | E |
| Respiratory toxicity | 0.825 | P | 0.67 | M | 0.099 | E | 0.11 | E | 0.77 | P |
| Human hepatotoxicity | 0.89 | P | 0.84 | P | 0.983 | P | 0.954 | P | 0.761 | P |
| Drug-induced nephrotoxicity | 0.991 | P | 0.97 | P | 0.984 | P | 1 | P | 0.986 | P |
| Drug-induced neurotoxicity | 0.996 | P | 0.992 | P | 0.98 | P | 1 | P | 0.965 | P |
| Ototoxicity | 0.389 | M | 0.178 | E | 0.009 | E | 0.869 | P | 0.45 | M |
| Hematotoxicity | 0.77 | P | 0.768 | P | 0.894 | P | 0.951 | P | 0.423 | M |
| Genotoxicity | 0.999 | P | 0.998 | P | 1 | P | 1 | P | 0.752 | P |
| RPMI-8226 immunotoxicity | 0.026 | E | 0.021 | E | 0.012 | E | 0.954 | P | 0.254 | E |
| A549 cytotoxicity | 0.087 | E | 0.035 | E | 0.016 | E | 1 | P | 0.369 | M |
| Hek293 cytotoxicity | 0.625 | M | 0.517 | M | 0.738 | P | 0.992 | P | 0.867 | P |
| BCF | 2.151 | 1.41 | 1.639 | 0.528 | 1.727 | |||||
| IGC50 | 4.784 | 4.615 | 5.119 | 3.549 | 3.842 | |||||
| LC50DM | 6.246 | 5.846 | 6.443 | 5.09 | 5.126 | |||||
| LC50FM | 5.908 | 5.53 | 6.188 | 4.397 | 4.593 | |||||
In absorption, compounds 5, 6, and 7 showed good parameters, including Caco-2 permeability, MDCK permeability, PAMPA, Pgp-substrate, HIA (human absorption intestinal), F20%, F30%, and F50%, compared to PTX and GEF. Furthermore, the Caco-2 permeability of these compounds showed an excellent level (higher than −5.15 log unit), similar to GEF. The study results predicted that these compounds show high gastrointestinal absorption, accordingly, they may have remarkably good bioavailability after oral administration.
In distribution, compounds 5, 6, and 7 showed poor to medium parameters such as PPB (%), Fu (%), OATP1B1 inhibitor, OATP1B3 inhibitor, BCRP inhibitor, and BSEP inhibitor. These showed good plasma protein binding capacity with PPB > 90% compared to PTX compounds (PPB = 93%). However, the optimal PPB needs to be less than 90%, like the GEF. In contrast, these compounds showed two excellent parameters, including VD (optimal: 0.04–20 L kg−1) and MRP1 inhibitor. In addition, studying the BBB (Blood–Brain Barrier) permeability, compound 6 demonstrated no ability to penetrate the BBB, similar to reference drugs PTX and GEF.
In metabolism, compounds 5, 6, and 7 were predicted to be potent inhibitors of cytochrome enzymes CYP1A2, CYP2C19, CYP2C9, and CYP2C8. Additionally, compound 6 demonstrated strong inhibition of CYP3A4 as a main enzyme involved in drug metabolism, whereas compounds 5 and 7 did not exhibit inhibition of this enzyme.
In excretion, the CL (clearance) is a significant parameter in deciding dose intervals as a tool for the assessment of excretion. All active compounds and PTX showed lower CL values and were classified as low clearance levels (CL < 5 mL min−1 kg−1) compared to GEF (moderate CL = 5–15 mL min−1 kg−1). Therefore, compounds 5, 6, and 7 exhibited slower clearance rates, which means they require longer dosing intervals.
Finally, in toxicity, compounds 5, 6, and 7 showed poor parameters such as DILI (drug-induced liver injury), AMES toxicity, FDAMDD (maximum recommended daily dose), skin sensitization, carcinogenicity, eye irritation, human hepatotoxicity, drug-induced nephrotoxicity, drug-induced neurotoxicity, hematotoxicity, genotoxicity, and Hek293 cytotoxicity. However, these compounds did not show rat oral acute toxicity, eye corrosion, ototoxicity, RPMI-8226 immunotoxicity, and A549 cytotoxicity. Overall, the toxicity of the potential compounds was similar to that of the reference drugs PTX and GEF.
ADMETlab 3.0 and SwissADME are powerful computational tools designed to predict the absorption, distribution, metabolism, excretion, and toxicity (ADMET) properties of small molecules, offering significant advantages in drug discovery such as a robust database, advanced machine learning algorithms, and integration of diverse molecular descriptors. However, limitations exist, such as the potential for inaccuracies in predictions for compounds outside the training dataset's chemical space, as seen in cases such as the mispredicted P-gp substrate status of Gefitinib. The model's dependence on specific descriptors may also miss complex biological interactions, requiring experimental validation. These limitations highlight the need for careful interpretation and additional experimental studies to ensure accuracy.
| Ligand | Affinity binding (kcal mol−1) | Distance (Å) | Category | Types | Amino acid |
|---|---|---|---|---|---|
| a CHB – conventional hydrogen bond (strong hydrogen bond), CarHB – carbon–hydrogen bond, GEF – Gefitinib. | |||||
| 5 | −9.6 | 3.05 | Halogen | Halogen (fluorine) | ASP855 |
| 4.35 | Electrostatic | π–cation | LYS745 | ||
| 3.97 | Hydrophobic | π–σ | LEU718 | ||
| 4.83 | Hydrophobic | π–alkyl | VAL726 | ||
| 4.00 | Hydrophobic | π–alkyl | LYS745 | ||
| 5.47 | Hydrophobic | π–alkyl | VAL726 | ||
| 4.58 | Hydrophobic | π–alkyl | ALA743 | ||
| 4.98 | Hydrophobic | π–alkyl | LEU844 | ||
| 6 | −10.1 | 3.75 | Hydrophobic | π–σ | LEU718 |
| 4.85 | Hydrophobic | π–alkyl | VAL726 | ||
| 4.43 | Hydrophobic | π–alkyl | LYS745 | ||
| 5.08 | Hydrophobic | π–alkyl | ALA743 | ||
| 5.31 | Hydrophobic | π–alkyl | LEU844 | ||
| 7 | −9.8 | 2.25 | Hydrogen bond | CHB | THR854 |
| 3.60 | Hydrophobic | π–σ | LEU718 | ||
| 4.45 | Hydrophobic | π–alkyl | VAL726 | ||
| 4.79 | Hydrophobic | π–alkyl | VAL726 | ||
| 4.93 | Hydrophobic | π–alkyl | ALA743 | ||
| 4.48 | Hydrophobic | π–alkyl | LYS745 | ||
| GEF | −7.8 | 2.29 | Hydrogen bond | CHB | MET793 |
| 3.29 | Hydrogen bond | CarHB | LEU718 | ||
| 3.36 | Hydrogen bond | CarHB | GLN791 | ||
| 3.32 | Hydrogen bond | CarHB | MET793 | ||
| 2.91 | Halogen | Halogen (fluorine) | GLU762 | ||
| 3.31 | Hydrophobic | π–σ | LEU844 | ||
| 4.17 | Hydrophobic | Alkyl | LEU718 | ||
| 5.46 | Hydrophobic | Alkyl | LEU792 | ||
| 4.11 | Hydrophobic | Alkyl | LYS745 | ||
| 5.42 | Hydrophobic | Alkyl | MET766 | ||
| 4.33 | Hydrophobic | Alkyl | LEU788 | ||
| 4.75 | Hydrophobic | π–alkyl | LEU718 | ||
| 5.24 | Hydrophobic | π–alkyl | VAL726 | ||
| 4.58 | Hydrophobic | π–alkyl | ALA743 | ||
| 4.97 | Hydrophobic | π–alkyl | LEU844 | ||
| 3.50 | Hydrophobic | π–alkyl | ALA743 | ||
| 4.15 | Hydrophobic | π–alkyl | LYS745 | ||
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| Fig. 4 3D representation of the interaction of potential compounds 5–7 and Gefitinib (GEF) with epidermal growth factor receptor (EGFR) (Spodoptera frugiperda). | ||
In addition, compound 5 formed one halogen bond (3.05 Å, ASP855), one electrostatic π–cation interaction (4.35 Å, LYS745), and hydrophobic interactions (π–σ and π–alkyl) at amino acids LEU718, VAL726, LYS745, ALA743, and LEU844 (3.97–5.47 Å). Compound 7 established one strong hydrogen bond (2.25 Å, THR854) and hydrophobic interactions (π–σ and π–alkyl) at amino acids LEU718, VAL726, ALA743, and LYS745 (3.60–4.93 Å). Meanwhile, compound 6 only exhibited hydrophobic interactions (π–σ and π–alkyl) at amino acids LEU718, VAL726, LYS745, ALA743, and LEU844, with bond lengths ranging from 3.75 to 5.31 Å. Notably, three potential compounds exhibited interactions with amino acids LYS745, LEU718, VAL726, ALA743, and LEU844, similar to the co-crystallized ligand and reference drug GEF. Therefore, molecular docking results showed that strong EGFR inhibition may be responsible for the potent and selective anticancer activity of these compounds. However, these findings need to be confirmed by in vitro binding studies of compounds 5, 6, and 7 to the EGFR target. Furthermore, to elucidate the mechanisms underlying the observed cytotoxicity of these compounds, further investigation into alternative molecular targets or potential off-target effects is necessary.
The melting points of all products were recorded using the Sanyo Gallenkamp melting point apparatus. Infrared spectra were obtained on the IRAffinity-1S FT-IR spectrophotometer from Shimadzu. Synthesized substances underwent molecular characterization through mass spectrometry on an Agilent LC-MS instrument and nuclear magnetic resonance (NMR) spectroscopy recorded on Bruker Avance III 500 MHz. DMSO-d6 was utilized as a solvent for all compounds. Coupling constants (J) and chemical shifts (δ) were given in Hz and ppm, respectively.
Once the reaction completion is confirmed on TLC, the reaction mixture is left at room temperature. The aqueous solution of saturated Na2CO3 (100 mL) is added gradually (10 mL each time) until the pH of the mixture reaches 7. When the product crystallizes, it is filtered, washed with cold water, and dried under a vacuum to yield Q0. Synthesis yield: 85%.
Concentrated sulfuric acid and polyphosphoric acid (PPA) are subsequently added and the reaction mixture is refluxed for 2 hours. The product precipitates as white crystals. When TLC shows the completion of the reaction, the reaction mixture is then left at room temperature and cooled to 0–5 °C. An aqueous solution of 10% NaOH (25 mL) is added dropwise to neutralize the mixture to pH 8 and therefore, more crystals can be observed.
The obtained mixture is filtered, washed with cold water and dried under vacuum to yield 1. Synthesis yield: 66%.
N), 8.34 (2H, d, J = 8.5 Hz, H–Ar), 8.19 (1H, d, J = 2.0 Hz, H–Ar), 7.99–7.94 (3H, m, H–Ar), 7.84 (1H, d, J = 9.0 Hz, H–Ar), 7.72 (2H, d, J = 7.5 Hz, H–Ar), 7.51–7.45 (3H, m, H–Ar). 13C NMR (125 MHz, DMSO-d6, δ ppm): 166.0, 156.6, 153.2, 149.4, 144.6, 137.7, 134.5, 134.0, 131.2, 129.6, 129.5, 129.3, 129.2, 127.3, 125.3, 123.7, 122.1. LC-MS (m/z) [M + H]+ calcd for C21H14ClN4O3 405.0749, found 405.0792.
N), 8.17 (1H, d, J = 2.0 Hz, H–Ar), 7.93–7.94 (2H, m, H–Ar), 7.82 (1H, d, J = 8.5 Hz, H–Ar), 7.78 (1H, d, J = 8.5 Hz, H–Ar), 7.70–7.68 (3H, m, H–Ar), 7.52–7.45 (3H, m, H–Ar). 13C NMR (125 MHz, DMSO-d6, δ ppm): 165.8, 156.7, 144.7, 134.9, 134.6, 134.0, 132.7, 131.9, 131.3, 131.2, 129.7, 129.6, 129.4, 127.9, 127.4, 125.4, 122.1. LC-MS (m/z) [M + H]+ calcd for C21H13Cl3N3O 428.0119, found 428.0130.
N), 8.17 (1H, d, J = 2.5 Hz, H–Ar), 7.93 (1H, dd, J = 8.5, 2.5 Hz, H–Ar), 7.83–7.78 (3H, m, H–Ar), 7.69 (2H, d, J = 7.0 Hz, H–Ar), 7.50–7.43 (3H, m, H–Ar), 7.37–7.34 (2H, m, H–Ar). 13C NMR (125 MHz, DMSO-d6, δ ppm): 168.5, 156.9, 153.5, 145.1, 134.8, 134.2, 131.4, 131.2, 131.1, 130.0, 129.9, 129.7, 128.8, 127.7, 125.6, 122.3, 116.4, and 116.2 (JC–F = 25.0 Hz). LC-MS (m/z) [M + H]+ calcd for C21H14ClFN3O 378.0804, found 378.0814.
N), 8.20 (1H, d, J = 2.0 Hz, H–Ar), 7.93 (1H, dd, J = 8.5, 2.5 Hz, H–Ar), 7.81 (1H, d, J = 8.5 Hz, H–Ar), 7.69 (2H, d, J = 7.5 Hz, H–Ar), 7.63–7.59 (1H, m, H–Ar), 7.49–7.37 (4H, m, H–Ar), 7.35 (1H, dd, J = 9.5, 9.5 Hz, H–Ar). 13C NMR (125 MHz, DMSO-d6, δ ppm): 164.2, 156.7, 153.4, 145.0, 135.0, 134.8, 134.3, 134.2, 131.4, 129.9, 129.8, 129.7, 127.6, 126.6, 125.8, 122.5, 118.7, 116.0, 115.9, and 115.8 (JC–F = 12.5 Hz). LC-MS (m/z) [M + H]+ calcd for C21H13Cl2FN3O 412.0414, found 412.0441.
N), 8.16 (1H, d, J = 2.5 Hz, H–Ar), 7.92 (1H, dd, J = 8.5, 2.5 Hz, H–Ar), 7.80 (1H, d, J = 8.5 Hz, H–Ar), 7.69–7.68 (2H, m, H–Ar), 7.48–7.43 (3H, m, H–Ar), 7.27 (1H, dd, J = 8.0, 2.5 Hz, H–Ar), 7.18 (1H, d, J = 1.0 Hz, H–Ar), 7.05 (1H, d, J = 8.0 Hz, H–Ar), 6.12 (2H, s, –OCH2O–). 13C NMR (125 MHz, DMSO-d6, δ ppm): 169.0, 156.9, 153.5, 151.4, 148.1, 145.1, 134.7, 134.3, 131.3, 129.9, 129.8, 129.7, 127.7, 126.6, 126.4, 125.5, 122.3, 108.6, 105.5, 102.0. LC-MS (m/z) [M + H]+ calcd for C22H15ClN3O3 404.0797, found 404.0742.
N), 8.17 (1H, d, J = 2.5 Hz, H–Ar), 7.92 (1H, dd, J = 8.5, 2.5 Hz, H–Ar), 7.81 (1H, d, J = 9.0 Hz, H–Ar), 7.68 (2H, d, J = 7.0 Hz, H–Ar), 7.60–7.58 (1H, m, H–Ar), 7.54 (1H, dd, J = 9.0, 2.5 Hz, H–Ar), 7.51–7.45 (3H, m, H–Ar), 6.92 (1H, d, J = 9.0 Hz, H–Ar). 13C NMR (125 MHz, DMSO-d6, δ ppm): 164.4, 157.9, 157.0, 153.6, 145.0, 136.4, 134.7, 134.4, 131.3, 129.9, 129.8, 129.6, 129.2, 127.7, 125.6, 122.5, 120.4, 119.1, 110.5. LC-MS (m/z) [M + H]+ calcd for C21H14BrClN3O2 453.9952, found 453.9970; [M–H]− calcd for C21H12BrClN3O2 451.9807, found 451.9809.
N), 8.15 (1H, d, J = 2.5 Hz, H–Ar), 7.90 (1H, dd, J = 8.5, 2.5 Hz, H–Ar), 7.80 (1H, d, J = 8.5 Hz, H–Ar), 7.68 (2H, d, J = 7.0 Hz, H–Ar), 7.53 (2H, d, J = 9.0 Hz, H–Ar), 7.47–7.41 (3H, m, H–Ar), 6.74 (2H, d, J = 8.5 Hz, H–Ar), 3.01 (6H, s, –N(CH3)2). 13C NMR (125 MHz, DMSO-d6, δ ppm): 169.8, 157.2, 153.7, 153.1, 145.2, 134.4, 131.1, 130.4, 129.7, 127.4, 125.4, 122.4, 118.8, 111.5. LC-MS (m/z) [M + H]+ calcd for C23H20ClN4O 403.1320, found 403.1334.
N), 8.17 (1H, s, H–Ar), 7.92 (1H, d, J = 8.5 Hz, H–Ar), 7.81 (1H, d, J = 9.0 Hz, H–Ar), 7.68 (2H, d, J = 7.5 Hz, H–Ar), 7.49–7.44 (3H, m, H–Ar), 7.39–7.32 (1H, m, H–Ar), 7.15–7.12 (2H, m, H–Ar), 6.97 (1H, d, J = 8.5 Hz, H–Ar). 13C NMR (125 MHz, DMSO-d6, δ ppm): 170.2, 157.7, 153.4, 145.1, 134.7, 134.2, 133.3, 131.3, 130.2, 130.0, 129.8, 129.7, 127.7, 125.6, 120.4, 120.0, 113.9. LC-MS (m/z) [M + H]+ calcd for C21H15ClN3O2 376.0847, found 376.0839.
N), 8.15 (1H, d, J = 2.0 Hz, H–Ar), 7.91 (1H, dd, J = 9.0, 2.5 Hz, H–Ar), 7.80 (1H, d, J = 8.5 Hz, H–Ar), 7.70 (2H, d, J = 7.5 Hz, H–Ar), 7.47–7.43 (3H, m, H–Ar), 7.20 (1H, s, H–Ar), 7.17 (1H, d, J = 8.0 Hz, H–Ar), 6.88 (1H, d, J = 8.0 Hz, H–Ar), 3.97 (2H, q, J = 7.0 Hz, –CH2–), 1.31 (3H, t, J = 7.0 Hz, –CH3). 13C NMR (125 MHz, DMSO-d6, δ ppm): 169.2, 157.0, 153.6, 151.7, 147.1, 145.1, 134.6, 134.3, 131.2, 129.8, 129.8, 127.6, 125.5, 124.3, 123.4, 122.4, 115.6, 111.6, 63.8, 14.5. LC-MS (m/z) [M + H]+ calcd for C23H19ClN3O3 420.1109, found 420.1125.
N), 8.19 (1H, d, J = 2.0 Hz, H–Ar), 7.93 (1H, dd, J = 9.0, 2.5 Hz, H–Ar), 7.84–7.80 (2H, m, H–Ar), 7.69 (2H, d, J = 7.0 Hz, H–Ar), 7.66 (1H, d, J = 8.5 Hz, H–Ar), 7.53–7.45 (4H, m, H–Ar). 13C NMR (125 MHz, DMSO-d6, δ ppm): 163.1, 156.8, 153.3, 144.6, 137.6, 135.5, 134.4, 134.1, 131.2, 129.6, 129.5, 129.4, 129.3, 128.7, 128.6, 127.9, 127.3, 125.4, 122.2. LC-MS (m/z) [M + H]+ calcd for C21H13Cl3N3O 428.0119, found 428.0141.
N), 8.21 (1H, d, J = 2.5 Hz, H–Ar), 7.93 (1H, dd, J = 2.5, 8.5 Hz, H–Ar), 7.82 (1H, d, J = 8.5 Hz, H–Ar), 7.68–7.71 (3H, m, H–Ar), 7.58–7.64 (2H, m, H–Ar), 7.46–7.52 (3H, m, H–Ar), 7.43–7.40 (1H, m, H–Ar). 13C NMR (125 MHz, DMSO-d6, δ ppm): 164.6, 164.4, 156.7, 153.3, 148.4, 144.7, 134.7, 134.4, 134.1, 133.5, 131.1, 129.9, 129.7, 129.5, 129.4, 129.3, 127.5, 127.4, 127.3, 125.4, 122.2, 119.2. LC-MS (m/z) [M + H]+ calcd for C21H14Cl2N3O 394.0509, found 394.0513.
N), 8.16 (1H, d, J = 2.0 Hz, H–Ar), 7.91 (1H, dd, J = 9.0, 2.5 Hz, H–Ar), 7.81 (1H, d, J = 9.0 Hz, H–Ar), 7.71 (2H, d, J = 7.0 Hz, H–Ar), 7.49–7.43 (3H, m, H–Ar), 7.30 (1H, d, J = 8.0 Hz, H–Ar), 7.24 (1H, s, H–Ar), 7.07 (1H, d, J = 8.0 Hz, H–Ar), 3.83 (3H, s, –OCH3), 3.71 (3H, s, –OCH3). 13C NMR (125 MHz, DMSO-d6, δ ppm): 168.2, 156.9, 153.5, 152.8, 149.0, 144.9, 134.3, 134.2, 131.1, 129.5, 129.5, 129.5, 127.3, 125.2, 124.8, 123.8, 122.2, 111.7, 109.9; 55.60, 55.40. LC-MS (m/z) [M–H]− calcd for C23H17ClN3O3 418.0964, found 418.0973.
N), 8.75–8.74 (1H, dd, J = 4.5, 1.0 Hz, H–Ar), 8.18 (1H, d, J = 2.0, H–Ar), 8.07 (1H, d, J = 8.0 Hz, H–Ar), 7.93 (1H, dd, J = 8.5, 2.0 Hz, H–Ar), 7.82 (1H, d, J = 8.5 Hz, H–Ar), 7.71 (2H, d, J = 7.0, H–Ar), 7.55–7.44 (4H, m, H–Ar). 13C NMR (125 MHz, DMSO-d6, δ ppm): 166.9, 156.9, 153.5, 153.1, 149.9, 145.0, 134.9, 134.9, 134.2, 131.4, 130.0, 129.9, 129.7, 128.2, 127.7, 125.6, 124.3, 122.3. LC-MS (m/z) [M + H]+ calcd for C20H14ClN4O 361.0851, found 361.0860.
N), 8.16 (1H, d, J = 2.5 Hz, H–Ar), 7.99 (1H, s, H–Ar), 7.92 (1H, dd, J = 9.0, 2.5 Hz, H–Ar), 7.80 (1H, d, J = 9.0 Hz, H–Ar), 7.67 (2H, d, J = 7.0 Hz, H–Ar), 7.50–7.44 (3H, m, H–Ar), 7.25 (1H, d, J = 3.5 Hz, H–Ar), 6.75–6.74 (1H, m, H–Ar). 13C NMR (125 MHz, DMSO-d6, δ ppm): 157.7, 156.7, 148.4, 147.7, 147.2, 146.4, 134.4, 134.2, 129.8, 129.6, 129.5, 129.4, 128.3, 127.7, 127.4, 125.3, 125.1, 122.1, 119.4, 112.5, 112.4. LC-MS (m/z) [M + H]+ calcd for C19H13ClN3O2 350.0691, found 350.1725.
N), 8.49 (1H, s, H–Ar), 8.40 (1H, d, J = 8.5 Hz, H–Ar), 8.18 (1H, d, J = 2.5 Hz, H–Ar), 8.15 (1H, d, J = 7.5 Hz, H–Ar), 7.94 (1H, dd, J = 8.5, 2.5 Hz, H–Ar), 7.84–7.79 (2H, m, H–Ar), 7.71 (2H, d, J = 7.0 Hz, H–Ar), 7.52–7.45 (3H, m, H–Ar). 13C NMR (125 MHz, DMSO-d6, δ ppm): 166.1, 156.8, 153.4, 148.1, 144.7, 134.6, 134.1, 133.8, 131.3, 130.6, 129.7, 129.6, 129.4, 127.5, 126.4, 125.4, 122.4, 122.1. LC-MS (m/z) [M + H]+ calcd for C21H14ClN4O3 405.0749, found 405.0758.
N), 8.16 (1H, s, H–Ar), 7.91 (1H, dd, J = 8.5, 1.5 Hz, H–Ar), 7.81 (1H, d, J = 8.5 Hz, H–Ar), 7.69–7.65 (4H, m, H–Ar), 7.47–7.42 (3H, m, H–Ar), 7.03 (2H, d, J = 8.5 Hz, H–Ar), 4.11 (2H, q, J = 7.0 Hz, H–Ar), 1.34 (3H, t, J = 7.0 Hz, H–Ar). 13C NMR (125 MHz, DMSO-d6, δ ppm): 169.7, 169.6, 162.2, 159.6, 157.0, 145.1, 138.8, 134.7, 134.3, 131.3, 130.6, 129.8, 129.7, 127.7, 125.5, 124.4, 122.4, 115.0, 63.6, 14.5. LC-MS (m/z) [M + H]+ calcd for C23H19ClN3O2 404.1160, found 404.1186.
N), 8.17 (1H, d, J = 2.5 Hz, H–Ar), 7.93 (1H, dd, J = 9.0, 2.5 Hz, H–Ar), 7.82 (1H, d, J = 9.0 Hz, H–Ar), 7.70 (2H, d, J = 6.5 Hz, H–Ar), 7.50–7.41 (4H, m, H–Ar), 7.30 (1H, d, J = 8.5 Hz, H–Ar), 7.23 (1H, s, H–Ar), 7.17–7.15 (1H, m, H–Ar), 3.75 (3H, s, –OCH3). 13C NMR (125 MHz, DMSO-d6, δ ppm): 169.1, 159.5, 156.9, 153.6, 145.0, 134.8, 134.3, 133.6, 131.4, 130.3, 129.9, 129.9, 129.7, 127.7, 125.6, 122.4, 121.5, 118.8, 112.6, 55.2. LC-MS (m/z) [M + H]+ calcd for C22H17ClN3O2 390.1004, found 390.1016.
N), 8.17 (1H, d, J = 2.5 Hz, H–Ar), 7.92 (1H, dd, J = 8.5, 2.0 Hz, H–Ar), 7.81 (1H, d, J = 8.5 Hz, H–Ar), 7.69 (2H, d, J = 7.0 Hz, H–Ar), 7.55 (1H, d, J = 7.0 Hz, H–Ar), 7.49–7.38 (4H, m, H–Ar), 6.94 (1H, d, J = 2.0 Hz, H–Ar), 6.89–6.86 (1H, m, H–Ar). 13C NMR (125 MHz, DMSO-d6, δ ppm): 167.2, 158.6, 157.0, 153.6, 145.1, 134.7, 134.4, 131.3, 129.9, 129.8, 129.6, 129.1, 128.2, 127.8, 125.6, 122.5, 119.6, 118.0, 116.7. LC-MS (m/z) [M + H]+ calcd for C21H15ClN3O2 376.0847, found 376.0839; [M–H]− calcd for C21H13ClN3O2 374.0702, found 374.0696.
N), 8.15 (1H, d, J = 2.5 Hz, H–Ar), 7.91 (1H, dd, J = 8.5, 2.0 Hz, H–Ar), 7.81 (1H, d, J = 8.5 Hz, H–Ar), 7.67 (2H, d, J = 6.5 Hz, H–Ar), 7.47–7.43 (3H, m, H–Ar), 7.16 (2H, d, J = 8.0 Hz, H–Ar), 7.03 (1H, d, J = 8.0 Hz, H–Ar), 3.83 (3H, s, –OCH3). 13C NMR (125 MHz, DMSO-d6, δ ppm): 170.0, 156.9, 153.5, 152.0, 146.9, 145.1, 134.6, 134.3, 131.2, 129.9, 129.8, 129.7, 127.6, 125.5, 124.7, 123.0, 122.3, 113.1, 111.8, 55.7. LC-MS (m/z) [M + H]+ calcd for C22H17ClN3O3 406.0953, found 406.0964; [M–H]− calcd for C22H15ClN3O3 404.0807, found 404.0798.
N), 8.17 (1H, d, J = 2.5 Hz, H–Ar), 7.93 (1H, dd, J = 9.0, 2.5 Hz, H–Ar), 7.82 (1H, d, J = 9.0 Hz, H–Ar), 7.73–7.69 (4H, m, H–Ar), 7.61–7.58 (1H, m, H–Ar), 7.52–7.43 (5H, m, H–Ar). 13C NMR (125 MHz, DMSO-d6, δ ppm): 169.8, 156.9, 153.5, 145.0, 134.7, 134.2, 132.7, 132.1, 131.3, 129.9, 129.8, 129.7, 129.1, 128.6, 127.7, 125.6, 122.3. LC-MS (m/z) [M + H]+ calcd for C21H15ClN3O 360.0898, found 360.0899.
IR, MS, and NMR spectra. See DOI: https://doi.org/10.1039/d5ra03933a.
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