Ana L.
Pérez
a,
Axel
Kemmerer
a,
María de los Milagros
Citta
a,
Sebastián
Suarez
b,
Ricardo
Baggio
c,
Ayelén F.
Crespi
de,
Juan M.
Lázaro-Martínez
de,
Carlos A.
Ramos
f,
Marcelo
Vasquez Mansilla
g and
Carlos D.
Brondino
*a
aDepartamento de Física, Facultad de Bioquímica y Ciencias Biológicas, Universidad Nacional del Litoral - CONICET, Ciudad Universitaria, S3000ZAA Santa Fe, Argentina. E-mail: brondino@fbcb.unl.edu.ar
bDepartment of Plant Ecophysiology, Faculty of Biology, Adam Mickiewicz University, Uniwersytetu Poznańskiego 6, 61-614 Poznań, Poland
cGerencia de Investigación y Aplicaciones, Centro Atómico Constituyentes, Comisión Nacional de Energía Atómica, Buenos Aires, Argentina
dUniversidad de Buenos Aires, Facultad de Farmacia y Bioquímica, Departamento de Ciencias Químicas, 1113, Buenos Aires, Argentina
eCONICET – Universidad de Buenos Aires, Instituto de Química y Metabolismo del Fármaco (IQUIMEFA-UBA-CONICET), 1113, Buenos Aires, Argentina
fCentro Atómico Bariloche, Comisión Nacional de Energía Atómica, 8400, S. C. de Bariloche, Río Negro, Argentina
gInstituto de Nanociencia y Nanotecnología (CNEA-CONICET), Nodo Bariloche, R8402AGP, S. C. de Bariloche, Río Negro, Argentina
First published on 15th July 2025
We report a study to evaluate the relevance of oriented water molecules in the transmission of through-bond isotropic exchange between two distant S = 1/2 spins. The study is carried out by means of a structural, magnetic and EPR characterization of the copper compound (pyridine-2,6-dicarboxylato)-(pyridine-2,6-dicarboxylic acid)-copper(II) monohydrate (CuDPA). The structure of this compound consists of an extended lattice of Cu(II) ions (S = 1/2, I = 3/2) coordinated to two DPA ligands in a tridentate manner, linked by long pathways in which a oriented water molecule connects two covalent moieties. FTIR experiments complemented by DFT calculations confirmed the importance of this water molecule in stabilizing the crystal structure of CuDPA. X- and Q-band CW-EPR experiments on powder and single crystal samples of CuDPA indicated the presence of isotropic exchange interactions strong enough to collapse both the hyperfine structure due to the Cu(II) nuclei and the resonances of magnetically inequivalent Cu(II) ions. Magnetic susceptibility measurements indicated Curie–Weiss behavior in the 1.8–250 K range with antiferromagnetically coupled Cu(II) spins. The crystal EPR data were rationalized using the theory of Kubo and Tomita, considering that the position of the observed Lorentzian exchange-collapsed resonances is determined by the Zeeman Hamiltonian and that their widths arise from perturbations such as dipolar, anisotropic and antisymmetric exchange, hyperfine coupling and g anisotropy, all modulated by isotropic exchange. Although information about the molecular gi matrices is lost due to exchange averaging, their eigenvalues and eigenvectors could be reconstructed taking into account the symmetry operations in the crystal lattice of CuDPA. The exchange interaction between magnetically inequivalent copper ions was evaluated from the microwave dependent contribution due to the g anisotropy contribution to the linewidth. Our analysis revealed that, despite the strong distortion of the Cu(II) site, the magnetic ground state of the Cu(II) ion is primarily of the dx2−y2 type. We found that water mediates superexchange through a pathway with a through-bond length of ∼10 Å with |J| = 0.0177(7) cm−1. The latter demonstrates the importance of structural water molecules in mediating exchange interactions over long distances that are strong enough to determine the spin state of the system.
Of particular interest in this area is the role of water molecules and hydroxyl ions in transmitting exchange between two metal centers. The characterization of two dinuclear Cu complexes with Cu–OH⋯O–Cu topologies and Mn(III)/Fe(III) salen-type supramolecular dimers showed the ability of hydrogen bonds to transmit exchange, which was also rationalized by theoretical calculations.30–36 Interesting examples of water-mediated exchange-coupled systems are the Cu metal sites of the enzymes multi-copper oxidase and peptidylglycine a-hydroxylating monooxygenase, where theoretical calculations showed that water transmits relatively strong ferromagnetic exchange interactions.37 The role of water has also been investigated in several experiments that suggest that ordered water can mediate electron transfer reactions in redox proteins, providing an indirect evidence that water could act as an efficient superexchange pathway.25,38–48 However, the role of water as part of long superexchange pathways has received less attention, and to the best of our knowledge, neither experimental nor theoretical work has evaluated the situation. The objective of this work is to evaluate the transmission of exchange mediated by an oriented water molecule bridging two covalent moieties through hydrogen bonds.
Pyridine-2,6-dicarboxylic acid, also known as dipicolinic acid or DPA, is a biologically relevant versatile metal ligand that gives rise to metal compounds with different structural phases.49–54 Its rigid planar structure with a central pyridine ring flanked by two carboxylate groups promotes specific metal–ligand geometries while facilitating the formation of extended networks through secondary interactions. When coordinated to Cu(II) ions, this ligand binds in a tridentate fashion, but can form complexes with either one or two dipicolinate molecules per Cu(II) center, leading to different crystalline phases with distinct magnetic behaviors and providing an excellent platform for the study of structure–property relationships in weakly exchange-coupled systems.55–59 In particular, the compound (pyridine-2,6-dicarboxylato)-(pyridine-2,6-dicarboxylic acid)-copper(II) monohydrate consists of an extended lattice of mononuclear Cu(II) ion complexes in which two DPA ligands coordinate tridentate to each Cu(II) center. The crystal lattice of these compounds is stabilized by a single water molecule linking two covalent moieties between pairs of copper centers, making a suitable model system for evaluating exchange interactions mediated by ordered water molecules through long distances.
We report here structural, magnetic and EPR studies of (pyridine-2,6-dicarboxylato)-(pyridine-2,6-dicarboxylic acid)-copper(II) monohydrate, hereafter CuDPA. Magnetic susceptibility measurements are used to reveal the sign of J. Powder and single crystal X- and Q-band CW-EPR are used to evaluate the electronic properties of individual Cu(II) ions and the exchange parameters associated with the superexchange pathways, using a model based on the theory of Kubo and Tomita.60 All this information, complemented by a detailed study of the crystal structure of CuDPA, allowed us to determine the importance of an oriented water molecule bridging two covalent moieties for the transmission of long-range exchange interactions.
![]() | ||
| Fig. 1 Coordination around the Cu(II) ion of CuDPA with the Cu–ligand distances in Å and bond angles. | ||
All equatorial atoms, including Cu, are coplanar with bond distances of Cu1–O1 = Cu1–O1A = 2.008(13) Å, Cu1–N1 = 1.911(14) Å, and Cu1–N2 = 2.011(14) Å. The direction N1–Cu–N2 forms a C2 axis of symmetry lying along the c-crystal axis. As predicted by the Jahn–Teller effect, oxygen atoms from the protonated dipicolinic acid molecule occupy the apical positions of the octahedron because oxygen atoms from carboxylic acids are weaker donors than oxygen atoms from carboxylates (Cu1–O3 and Cu1–O3A distances are 2.425(13) Å).
Since the space group Pnna is centrosymmetric, the four Cu(II) complexes in the unit cell, hereafter referred to Cu1 (x, y, z), Cu2 (½ + x, y, −z), Cu3 (x, ½ − y, ½ − z), and Cu4 (½ + x, ½ − y, ½ + z) (Fig. 2), are related in pairs by crystallographic inversion centers, at (1/2, 0, 0) and (1/2, 1/2, 1/2), respectively (Cu1 with Cu2, and Cu3 with Cu4), see Table S1.† This indicates that the putative four magnetically inequivalent Cu centers present in the unit cell of CuDPA can be analyzed from a magnetic point of view as two magnetically inequivalent centers (Fig. S2†).
The Cu(II) centers of CuDPA are connected by a complex network of pathways that give rise to the 3D structure of the crystal lattice (Fig. 2 and Table 1). Cu1 and Cu3, as well as Cu2 and Cu4, (dCu–Cu = 5.968, 7.890 and 9.893 Å) interact through composite pathways that form corrugated layers perpendicular to the c-crystal axis. Remarkably, a single structural water molecule is involved in the hydrogen bond mediated pathways connecting the Cu(II) ions situated in each layer (Fig. 2, panels A and B). The potential superexchange pathways mediated by this water molecule are labeled J1,3–5 in Fig. 2 and Table 1.
Magnetically equivalent sites belonging to different layers (Cu1–Cu2, and Cu3–Cu4, dCu–Cu of 7.385 Å), are connected by hydrophobic interactions mediated by the aromatic ring of unprotonated DPA molecules (ring–ring distances of 3.417 Å). This interaction forms zigzag chains along the crystallographic a-axis, in which the putative superexchange pathway is identified as J6 in Fig. 2 and Table 1.
N/C
C)ar) is also observed at 1592 and 1582 cm−1 and the stretching of the C–H bond of the pyridinic ring is present at 3107 cm−1.66,67 In addition, the stretching of the OH groups is seen at frequencies between 3500 and 2150 cm−1. This frequency range, which is lower than the usual one above 3000 cm−1 for the OH groups, is indicative of a strong intermolecular hydrogen bonding network.
Due to the intensity of the bands associated with the carboxylate groups, it is difficult to distinguish the contribution associated with the bending of the structural water molecules. Therefore, we performed theoretical calculations based on DFT to rationalize the importance of the structural water molecules in stabilizing the crystal lattice. The calculations predicted the experimental FTIR data reasonably well, using as a model the reported X-ray structure of CuDPA (Table S2†). However, the same calculations performed in the absence of water molecules showed drastic changes in the arrangement of the Cu(II) ion complexes and hence in the predicted IR spectrum (Tables S3 and S4†). Taken together, ATR-FTIR and computational calculations indicate the important role of the structural water molecule in stabilizing the crystal structure of CuDPA and thus its relevance as a linker of the Cu(II) ions.
| Hz = μBS·g·B | (1) |
In eqn (1), S is the total spin obtained as
, with the sum being over all the unit cells (p) of the crystal, g = (g1 + g2 + g3 + g4)/4 is the crystal g matrix, where gi are the molecular matrices, and B is the external magnetic field in the lab frame. Since Cu1 and Cu2, as well as Cu3 and Cu4, are related by an inversion, they are magnetically equivalent for the EPR experiment (g1 = g2 and g3 = g4) and hence g = (g1 + g3)/2.
We determined g2 (g2 = g·g) from the position of the single exchange collapsed resonances obtained in three crystal planes of CuDPA (Fig. 6, S3 and S4†).
![]() | ||
| Fig. 6 Q-band angular variations of g2 values in three crystal planes of CuDPA. The inset on the figure shows the mounting of a single crystal sample and indicates the relative position of the crystal axes with respect to the lab frame. The solid lines are obtained by least squares fitting the function g2(θ,ϕ) = h·g·g·h, where h = B/|B| is the magnetic field direction in the lab frame, to the data. The X-band data along with the fit are shown in Fig. S4.† | ||
The g2 components of CuDPA in the lab frame, together with their eigenvalues and eigenvectors are given in Table 2. As shown in Fig. 6 and S4,† the g2 angular variation at both X- and Q-band follows the symmetry of the orthorhombic lattice of CuDPA, i.e. the C2 symmetry around the three crystal axes of CuDPA.
| Crystal g 2 matrix | |
| X-band/Q-band | |
| g xx 2 = 4.917(2)/4.910(3) | g xy 2 = 0.000(2)/0.002(3) |
| g yy 2 = 4.312(2)/4.272(2) | g zx 2 = −0.002(2)/0.003(3) |
| g zz 2 = 4.443(2)/4.439(3) | g zy 2 = −0.171(2)/−0.168(3) |
| g 1 = 2.0480(7)/2.0416(7) | a 1 = [0.0012(7), 0.824(2), 0.567(3)]/[−0.005(4), 0.850(3), 0.527(5)] |
| g 2 = 2.1356(7)/2.1314(7) | a 2 = [0.006(6), −0.567(3), 0.824(2)]/[−0.006(8), −0.527(5), 0.850(3)] |
| g 3 = 2.2173(5)/2.2159(7) | a 3 = [−1.00000(3), −0.002(4), 0.006(6)]/[−1.00000(8), −0.001(5), −0.008(7)] |
| Molecular g i 2 matrix | |
| X-band/Q-band | |
| g ixx 2 = 4.918(4)/4.910(4) | g ixy 2 = −0.268(4)/−0.255(4) |
| g iyy 2 = 4.312(5)/4.272(5) | g izx 2 = 0.388(4)/0.413(4) |
| g izz 2 = 4.442(5)/4.438(5) | g izy 2 = −0.171(5)/−0.166(5) |
| g i1 = 2.290(3)/2.290(3) | a i1 = [0.823(2), −0.568(2), 0.0000(5)]/[0.823(2), −0.568(2), 0.000(2)] |
| g i2 = 2.058(3)/2.051(3) | a i2 = [−0.3227(9), −0.467(2), 0.823(3)]/[−0.2984(9), −0.433(1), 0.851(2)] |
| g i3 = 2.048(3)/2.042(3) | a i3 = [0.468(1), 0.677(2), 0.568(2)]/[0.483(1), 0.700(2), 0.526(2)] |
In parallel, we simulated the well-resolved powder Q-band EPR spectrum of CuDPA with the Zeeman Hamiltonian of eqn (1) (Fig. 5). The parameters obtained were g1,2,3 = 2.220, 2.122, 2.042. These g values were used as starting values to simulate the less resolved X-band spectrum, which yielded g1,2,3 = 2.215, 2.120, 2.043. The similarity of the g-values obtained for the powder samples to the eigenvalues of the crystal g matrix, as determined by single crystal EPR spectroscopy, confirms that the spectra shown in Fig. 5 reflect the symmetry of the crystal lattice rather than that of the individual Cu(II) ions.
The molecular g∥ value was obtained from the invariance of the trace of a symmetric matrix upon rotation, i.e. Tr g2 = Trgi2 = g∥2 + 2 g⊥2 (g∥ = 2.299/2.298 at X/Q band with the g∥ eigenvector lying along the normal to the Cu(II) site). To verify the validity of the axial symmetry assumption, the diagonal molecular gi2 matrices obtained for the two inequivalent Cu(II) ions in the molecular frame were then calculated in the lab frame and the predicted gi2(θ,ϕ) values were plotted together with those of the crystal g2 matrix (Fig. S5†). As shown in this figure, there is a good agreement between calculation and experiment but with some small discrepancies, indicating that the axial model needed some corrections. The latter was considered upon small break of the axial symmetry, searching for the gi22 and gi32 eigenvalues and eigenvectors that gave the best agreement with the experimental data (Fig. 7 and Table 2). This procedure allowed us to conclude that the magnetic ground state of the Cu(II) ion is mainly of the dx2−y2 type, despite the strong distortion of the Cu(II) site. This was confirmed by DFT calculations that yielded a SOMO orbital predominantly of the dx2−y2 type (Fig. S6†).
![]() | ||
Fig. 7 Theoretical angular variation in the lab frame of the molecular gi2 values predicted with the parameters listed in Table 2 (Cu1 Cu2 in red, Cu3 Cu4 in blue). X-band results are shown as ESI (Fig. S7†). The averages of the molecular gi2 values of the magnetically inequivalent Cu(II) sites are plotted in magenta (dashed line) together with the crystal g2 values in black. The four Cu(II) sites are magnetically equivalent in the zy plane (magenta) (Fig. S2†). | ||
| H = Hz + Hex + H′ | (2) |
, is the HDVV Hamiltonian between the spins localized at the Cu(II) sites i and j of the lattice, and H′ is a perturbation. H′ includes interactions such as dipolar, anisotropic and antisymmetric exchange, hyperfine coupling, and g anisotropy.68
The contributions to the EPR linewidth of the different interactions in extended lattices can be rationalized on the basis of Kubo and Tomita and Anderson theories, in which the H′ terms are taken as perturbations to Hz + Hex (eqn (2)).60,69 For 3D extended lattices with a single absorption line narrowed by exchange, the theory predicts inhomogeneously broadened Lorentzian resonances with positions given mainly by Hz (eqn (1)) and linewidths proportional to ∑ M2/J, where M2 is the second moment of each interaction contributing to H′. While H′ terms give broadening, isotropic exchange gives narrowing.
Fig. 8 shows the angular variation in the lab frame of the EPR peak-to-peak linewidth (ΔBpp(θ,ϕ)) of the single exchange collapsed resonance of CuDPA. The angular variation of X-band ΔBpp(θ,ϕ) (Fig. 8) resembles that of the crystal g2(θ,ϕ) (Fig. S4,† top panel). This is not the case of ΔBpp(θ,ϕ) at Q-band (Fig. 8), which shows significant changes in both values and angular variation due to the higher frequency. This frequency dependent contribution to the linewidth (g anisotropy contribution) is detected in the xy and zx planes but not in the zy planes, indicating that it is only observed in those planes containing two magnetically inequivalent Cu(II) ions.
![]() | ||
| Fig. 8 Angular variation of the linewidth data at X- and Q-band (blue and red) in three crystal planes of CuDPA. The solid lines were obtained with the Γi parameters and function given in Table 3. | ||
The g anisotropy contribution to the linewidth for the case of four spins per unit cell in which S1 = S2 and S3 = S4 is H′ = μB(S1 − S3)(g1 − g3)B is given by70,71
![]() | (3) |
A least squares fitting of the function given in the caption to Table 3 to the X-band ΔBpp(θ,ϕ) data (Fig. 8) yielded the parameters listed in the table. The Q-band data were least squares fitted with this function and Γ1–4 X-band parameters plus eqn (3) to account for the g anisotropy contribution observed in the xy and zx planes (Γ5 parameter in Table 3). Note that the contributions to the linewidth at X-band are not significantly changed at Q-band, as shown by the data in the zy plane. The value determined for Γ5 and eqn (3) allowed us to obtain we = 0.025(1) cm−1. This we value corresponds to the interference of the subpathways J1, J2, J3 and J5 (see Fig. 2 and Table 1), confirming that the structural water molecule plays an essential role in transmitting exchange. However, the analysis summarized in Table 1 indicates that J2, J3 and J5 can be neglected compared to J1 because the CO–π interaction (J2) is a very weak interaction and J3 and J5 involve ap–ap and eq–ap ligand–Cu(II) bonds, respectively.
sin2
θ
cos2
ϕ + Γ2
sin2
θ
sin2
ϕ + Γ3
cos2
θ + Γ4
2
sin
ϕ
sin
θ
cos
θ + Γ5[g1(θ,ϕ) − g3(θ,ϕ)]2 to the EPR linewidth data in Fig. 8. The Γ1–4 parameters correspond to linewidth contributions due to interactions such as unresolved hyperfine structure and anisotropic and antisymmetric exchange, while Γ5 weights the g anisotropy contribution. The Γ1–4 parameters were obtained from a least squares fitting the X-band linewidth data and were used to obtain the g anisotropy contribution at Q-band
| Γ i parameters (mT) | |
| Γ 1 | 8.5(1) |
| Γ 2 | 4.9(1) |
| Γ 3 | 6.7(1) |
| Γ 4 | −4.9(2) |
| Γ 5 | n.d. (X-band)/670(30) (Q-band) |
Thus, the fact that only J1 involves equatorial ligands to Cu(II) indicates that this is the main superexchange pathway between magnetically inequivalent Cu(II) centers, since it is the only subpathway that involves a direct interaction between the dx2−y2 orbitals of neighboring magnetically inequivalent Cu(II) ions. This interpretation was additionally confirmed by DFT calculations that showed that the unpaired spin density is localized mainly on the equatorial ligand plane of the copper centers (Fig. S6†). Under this assumption,
, then |J1| ∼ 0.0177(7) cm−1.
It is important to note that, while π–π stacking (J6) couples magnetically equivalent Cu(II) centers and contributes to the Weiss constant (θ = zJS(S + 1)/3k)72,73 (along with all other exchange pathways J1–J5), it is not involved in the g anisotropy contribution to the EPR linewidth. In other words, the frequency-dependent EPR linewidth can only be attributed to the interaction of g anisotropy and the exchange pathways between magnetically inequivalent Cu(II) ions.
Although obtaining these results involved the complementary use of magnetic and EPR techniques, the most important of them is single crystal EPR spectroscopy, since it allowed us to evaluate with high precision J constants lower than 1 cm−1 at room temperature. It is also important to note that this result could only be obtained by analyzing the data with the exchange narrowing theory of Kubo and Tomita for the case where the exchange collapsed resonance lines undergo broadening due to the inequivalence of the magnetic ions of the lattice.
The main conclusion of the paper is that an oriented water molecule connecting two covalent moieties through hydrogen bonds constitutes an antiferromagnetic superexchange pathway strong enough to collapse both the hyperfine structure and the magnetically inequivalent copper ions into a nearly Lorentzian shape resonance line, thus determining the transition from 0D to 3D magnetic dimensionality of the system.
Remarkably, the superexchange is mediated by a mixed covalent and non-covalent pathway with a through-bond length of ∼10 Å and a |J| ∼ 0.0177(7) cm−1. This demonstrates the importance of water molecules linked through non-covalent interactions in determining the spin state of the system. Furthermore, this J value predicts maximum electron transfer rates of ∼1011 s−1 between two redox centers, which is much higher than the values typically reported in biological copper systems.20,74 In conclusion, the ability of water to transmit long-range isotropic exchange interactions confirms its potential to efficiently mediate electron transfer reactions over long distances.
:
2θ configuration, with a step size of 0.026 degrees and a counting time of 200 seconds per step. The sample was placed on a zero background silicon sample holder. The instrument was calibrated against a silicon standard.
Suitable single crystals were mounted and data were collected at room temperature using a Gemini A diffractometer, Oxford Diffraction, Eos CCD detector with graphite-monochromated CuKα (λ = 1.54184 Å) radiation, available at INQUIMAE (FCEN-UBA). CrysAlisPro software, from Oxford Diffraction, was used to collect initial frames for the determination of the unit cell, and subsequently, the program was used to plan data collection.75 After collection, data reduction was carried out in the CrysAlisPro suite, and multiscan absorption correction was carried out.
Single crystal of CuDPA was oriented by gluing its (0–1–1) plane to a cleaved KCl cubic holder defining a set of orthogonal xyz lab axes. The x-axis corresponds to the crystal a-axis, while y = b × [0, cos
(−57.05°), sin
(−57.05°)] and z = c × [0, −sin
(−57.05°), cos
(−57.05°)]. The orientation of the unit cell with respect to the macroscopic single crystal is shown in the inset of Fig. 6. The sample holder was positioned at the center of the microwave cavity as described elsewhere,79 and rotated with the magnetic field in the xy, zx and zy planes at 10° intervals. The resulting data (Fig. 6 and 8) were analyzed with home-made programs based on MATLAB®. The EPR spectra were analyzed using the EasySpin toolbox.80
Footnote |
| † Electronic supplementary information (ESI) available. See DOI: https://doi.org/10.1039/d5dt01377a |
| This journal is © The Royal Society of Chemistry 2025 |