Nicolás Montoya-Morenoa,
Luis E. Seijasb,
Areli Flores-Gasparc,
F. Javier Torres
*d and
Jorge Alí-Torres
*a
aDepartamento de Química, Universidad Nacional de Colombia-Sede Bogotá, Bogotá DC, Colombia. E-mail: jialit@unal.edu.co
bEscuela de Ingeniería, Ciencia y Tecnología, Universidad del Rosario, Bogotá 111711, Colombia
cDepartamento de Química, Universidad Militar Nueva Granada, Cajicá 250240, Colombia
dGrupo de Química Computacional y Teórica (QCT-USFQ), Departamento de Ingeniería Química, Universidad San Francisco de Quito, Diego de Robles y Vía Interoceánica, Quito 17-1200-841, Ecuador. E-mail: jtorres@usfq.edu.ec
First published on 2nd December 2024
Free radicals such as superoxide are reactive species that, upon accumulation, lead to oxidative stress. The superoxide dismutase (SOD) enzyme mitigates this stress by converting superoxide into hydrogen peroxide and oxygen. However, the probable lack of SOD supplementation has driven the search for alternatives, with copper complexes emerging as promising candidates. This study employs density functional theory (DFT) to evaluate the Gibbs reaction energies of nine copper complexes, suggesting their potential to catalyze the conversion of superoxide into molecular oxygen as all complexes exhibit thermodynamically favorable mechanisms for mimicking SOD. Furthermore, a topological analysis using Bader's quantum theory of atoms in molecules (QTAIM) was conducted to investigate the present interactions between copper, superoxide, and molecular oxygen species. The latter reveals that the interaction between copper and superoxide is partially covalent and attractive, transitioning to a closed-shell interaction upon charge redistribution to form the product. These findings suggest that copper complexes could effectively mimic SOD, offering a promising approach to reducing oxidative stress, a key factor in neurodegenerative diseases like Alzheimer's Disease (AD). This work provides a robust framework for assessing copper complexes as potential therapeutic agents in combating oxidative stress-related conditions.
![]() | (1) |
SOD supplements have been employed as a component of treatments for oxidative stress-associated diseases. However, these supplements often entail significant costs and face several biological limitations.6 In this context, intensive research has been conducted to identify and propose alternative approaches, being the most promising one the use of coordination complexes based on manganese, nickel, zinc, and copper as SOD mimics.7–11 Among these metals, manganese complexes have garnered the most extensive investigation,12 whereas fewer studies have explored copper13,14 and zinc systems.15,16
Copper is present in metalloenzymes like superoxide dismutase (SOD), cytochrome C oxidase, ascorbate oxidase, and ceruloplasmin.17 Its regulated release from synaptic vesicles plays a crucial role in neurotransmission and is essential for neuropeptide synthesis and the proper functioning of the immune system.18 Nevertheless, copper also can participate in redox reactions, catalyzing the production of reactive oxygen species, including superoxide and hydrogen peroxide, which exacerbate neuronal damage.19
In this chain of reactions shown in Fig. 1, superoxide has been reported as a key intermediate.21–23 In this sense, a therapeutic approach relies on the prevention of superoxide formation by using chelating ligands for metal cations.19 However, an alternative is the design of molecules capable of reverting the reaction using the superoxide transformation into molecular dioxygen (reversed step 1 in Fig. 1):
Cu2+L + O2˙− → Cu+L + O2 | (2) |
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Fig. 1 Mechanism proposed for the generation of hydrogen peroxide mediated by Cu–Aβ complexes. Aβ stands for the amyloid-beta peptide. Adapted from Alí-Torres, et al.20 |
On the other hand, Salen-type ligands are employed in coordination with copper, serving as versatile chelating agents in coordination chemistry. The synthesis of these ligands is straightforward and typically achieved through a condensation reaction between salicylaldehyde and an ethylenediamine derivative.24 Upon coordination with metal ions, Salen ligands form metal complexes that exhibit a wide range of catalytic properties and chemical reactivity, rendering them valuable in various applications. Metal–Salen complexes have attracted attention for their role in promoting a variety of catalytic reactions, including cycloaddition, A3-coupling reactions,25 and asymmetric synthesis.26 Furthermore, recent in vitro studies have demonstrated their potential as therapeutic agents, particularly exhibiting anticancer properties.27 Moreover, metal Salen complexes are employed as enzyme mimics, in biosensing and bioimaging applications, for their antimicrobial activity and applications in nanotechnology.28
In this work, we performed computational calculations based on density functional theory (DFT) to determine the Gibbs reaction energies of nine copper complexes with salen-type ligands, and through this, their potential to promote the oxidation of superoxide to molecular dioxygen (eqn (2)). These nine complexes were selected because, in a previous study, they demonstrated suitable standard reduction potentials to function as SOD mimics. Furthermore, we selected the most stable conformation of these complexes studied by Puentes-Díaz et al.29
We have also performed a topological analysis using Bader's quantum theory of atoms in molecules (QTAIM) to gain deeper insights into the underlying interactions. This approach allowed us to explore the detailed nature of the interactions between copper, the superoxide radical, and molecular dioxygen. The DFT + QTAIM description provides a comprehensive framework for assessing the potential of copper complexes in modulating oxidative processes, which are closely linked to oxidative stress and their implications in neurodegenerative diseases such as Alzheimer's disease (AD).
Possible reaction intermediaries were evaluated for the dismutation reaction of the superoxide radical mediated by copper complexes. These intermediates were proposed based on mechanisms reported in the literature for the SOD enzyme (eqn (3) to (8)), where M(ox) and M(red) stand for the oxidized and reduced states of the metals, respectively. We will refer to the mechanism described by Valko et al. as Mechanism 1 (eqn (3) and (4)),2 Mechanism 2 will denote the one reported by Miller et al. (eqn (5) and (6)),32 and Mechanism 3 will represent the mechanism proposed by Bull and Fee (eqn (7) and (8)).33
SOD − M(ox)(OH−) + O2˙− + H+ → SOD − M(red)(OH2) + O2 | (3) |
SOD − M(red)(OH2) + O2˙− + H+ → SOD − M(ox)(OH−) + H2O2 | (4) |
SOD − M(ox) + O2˙− + H+ → SOD − M(red)(H+) + O2 | (5) |
SOD − M(red)(H+) + O2˙− + H+ → SOD − M(ox) + H2O2 | (6) |
SOD − M(ox) + O2˙− → SOD − M(red) + O2 | (7) |
SOD − M(red) + O2˙− + 2H+ → SOD − M(ox) + H2O2 | (8) |
Following the latter, the mechanisms considered for the nine complexes are:
Ligandx − Cu(II)(OH−) + O2˙− + H+ → Ligandx − Cu(I)(OH2) + O2 | (9) |
Ligandx − Cu(I)(OH2) + O2˙− + H+ → Ligandx − Cu(II)(OH−) + H2O2 | (10) |
Ligandx − Cu(II) + O2˙− + H+ → Ligandx − Cu(I)(H+) + O2 | (11) |
Ligandx − Cu(I)(H+) + O2˙− + H+ → Ligandx − Cu(II) + H2O2 | (12) |
Ligandx − Cu(II) + O2˙− → Ligandx − Cu(I) + O2 | (13) |
Ligandx − Cu(I) + O2˙− + 2H+ → Ligandx − Cu(II) + H2O2 | (14) |
Note that the subscript of the ligand corresponds to the complex abbreviation (from systems 1 to 9):
The free reaction energy changes were calculated by fully optimizing the structures of the reactants, products, and intermediates. All the calculations were performed with the M06-2X density functional and the all-electron basis set 6-311++G(d,p) for all atoms. It is important to point out that this combination of functional and basis sets was previously calibrated by our group, and it provides accurate results for the molecular properties of copper complexes, particularly the standard reduction potential.29–31,34 The optimizations were conducted including the solvent effects (water) with the SMD continuous model.35 All calculations were carried out with the Gaussian16 suite of programs.36
It is important to comment that the quantum-mechanical description of both the reactant and product complexes associated to eqn (2) represents a challenge due to the nature of the electronic and spin states of the involved species. In these regards, it must be considered that the complexes containing Cu2+ and the superoxide O2˙− are open-shell systems presenting a doublet state, while the complexes bearing Cu+ are singlet close-shell cases. On the other hand, it is well-known that the electronic state of the O2 molecule with the lowest energy corresponds to the triplet. Despite this diversity of spin states, it must be noted that both, the Cu2+L/O2˙− and Cu+L/O2 systems, present total charge and multiplicity of 1+ and 3, respectively. To ensure the adequate spin state in the different species of the reactant and product complexes, the following protocol was employed: (i) The isolated CuL system with either 1+ or 2+ oxidation state was optimized considering the correct charge and multiplicity. (ii) Upon obtaining the equilibrium geometry, an O2˙− or O2 molecule was added close to the metallic center of the Cu2+L or Cu+L system, respectively. (iii) A subsequent optimization process was performed, leaving only the oxygen atoms of O2˙− or O2 free while keeping the atoms of the CuL complex frozen. (iv) Finally, a spin density analysis was performed to evaluate the spin distribution across the complex, ensuring that the correct spin state was accurately represented in the computational model.
Quantum Theory of Atoms in Molecules (QTAIM) provides a framework that links chemical concepts such as structure, bonding, and reactivity to the topology of the electron density (ρ(r)) within a chemical species ρ(r) is characterized by critical points, which are locations where the electron density possesses maxima, minima, or saddle points.37,38 These critical points are classified into four types: nuclear-critical points (NCP, maxima), bond-critical points (BCP, saddle), ring-critical points (RCP, saddle), and cage-critical points (CCP, minima). The classification of these points is based on the Laplacian of the electron density (∇2ρ(r)), and the number of each type of critical points within a molecule follows a topological rule known as the Poincaré–Hopf, which states that the difference between the number of NCPs and the sum of BCPs, RCPs, and CCPs equals one.39,40
To investigate the interaction between copper complexes and the superoxide radical, we analyzed the reactants and intermediates described in Mechanism 3 using various QTAIM descriptors to characterize the interactions at selected bond-critical points (BCPs, Fig. 3). We focused on the electron density (ρ(rBCP)), the Laplacian of the electron density (∇2ρ(rBCP)), the absolute value of the ratio between potential energy density and gradient kinetic energy density (|V(rBCP)|/G(rBCP)), and the total electronic energy density (H(rBCP)). The ρ(rBCP) correlates with bond orders and binding energies, providing insight into bond strength. The sign of ∇2ρ(rBCP) indicates whether electron density is concentrated (negative) or depleted (positive) at that point. The ratio |V(rBCP)|/G(rBCP) is an indicator for identifying atomic interactions, while the H(rBCP), helps assess the degree of covalence in the interaction. A negative H(rBCP) value that implies electron sharing, a characteristic of covalent bonds. These descriptors enable the classification of interactions into two main categories: shared shell interactions, which are associated with covalent bonds, and closed-shell interactions, which are related to ionic bonds. Beyond these parameters, another important characteristic for describing bond properties is ellipticity (ε = (λ1/λ2) − 1). This measure indicates the cylindrical symmetry of a bond; for instance, bonds like single C–C, have an ellipticity of zero. In contrast, aromatic bonds, such as those found in benzene, display an ellipticity of about 0.23, while the double bond in ethylene exhibits an ellipticity of 0.45. It is important to remind that, in QTAIM analysis, the electron density is partitioned into regions or basins around each atom, charges are assigned based on the density within each basin and the spin density is computed by separating the total electron density into components based on spin.41–45 The topology analysis calculations were performed using the MULTIWFN software,46 utilizing the optimized wavefunction extracted from the Gaussian output files.
Complexes | ΔG (kcal mol−1) | ||
---|---|---|---|
Mechanism 1 | Mechanism 2 | Mechanism 3 | |
1 | −2.0 | −80.8 | −79.4 |
2 | −6.1 | −84.3 | −77.5 |
3 | −6.9 | −75.5 | −81.0 |
4 | −7.1 | −75.6 | −80.4 |
5 | −7.3 | −76.3 | −82.1 |
6 | −9.3 | −75.2 | −83.0 |
7 | −7.2 | −73.4 | −81.5 |
8 | −7.2 | −75.4 | −81.2 |
9 | −9.6 | −76.0 | −80.8 |
Regarding the geometries, the reaction intermediates for the first mechanism present some geometrical changes compared to the isolated Cu2+ complex 4 depicted in Fig. 4A (the geometrical features of the remaining 8 complexes are reported in the ESI†). The geometry of this first intermediate (Fig. 4B), reveals the coordination of the water molecule to the copper center. Notably, this coordination results in an elongation of the Cu–N distances. In contrast, the intermediate of the second mechanism (Fig. 4C) involves binding a hydrogen atom to the nitrogen 1. This binding significantly alters the coordination sphere of the copper, which is solely coordinated by nitrogen atoms 3 and 4, leading the complex toward a more linear geometry upon reduction.
Consequently, the distances between nitrogen 1 and 2 and the copper cation are greater than those between nitrogen 3 and 4, and the metal center. Finally, in the intermediates of the third mechanism, illustrated in Fig. 4D, an oxygen molecule coordinates to the copper through one of its oxygen atoms. This interaction induces an elongation of all the Cu–N distances and causes a more pronounced distortion of the initial square-planar configuration of the Cu2+ coordination sphere. However, due to the constraints imposed by the ligand, the coordination center does not fully transition to the pyramidal shape typically associated with Cu+ complexes.
![]() | ||
Fig. 5 Electron spin density isosurfaces for (A) complex 1 and (B) complex 4 in reactant and product states. The isosurface was set to 0.003 a.u. |
Complex 1 – superoxide | Complex 4 – superoxide | |||
---|---|---|---|---|
Atom | Atomic charge | Spin density | Atomic charge | Spin density |
Cu2+ | 1.3993 | 0.8257 | 1.5226 | 0.8271 |
O | −0.4720 | 0.5178 | −0.4708 | 0.5243 |
O | −0.4887 | 0.4685 | −0.4586 | 0.4763 |
Complex 1 – dioxygen | Complex 4 – dioxygen | |||
---|---|---|---|---|
Atom | Atomic charge | Spin density | Atomic charge | Spin density |
Cu+ | 0.6128 | 0.0051 | 1.1267 | 0.0106 |
O | −0.0072 | 0.9950 | −0.0061 | 0.9931 |
O | −0.0118 | 0.9953 | −0.0094 | 0.9896 |
For the oxidized forms of complexes 1, 2, 4, 5, 7, 8, and 9, the interactions between the copper and nitrogen atoms exhibit similar values for both ρ(rBCP) and ∇2ρ(rBCP), with both being positive (see Tables S13 to S21 in the ESI†). These results suggest that the aliphatic and aromatic nitrogen atoms bond to the copper atom with comparable strength. Additionally, the ratio |V(rBCP)|/G(rBCP) is consistently around 1.11 across all the oxidized forms of the complexes. The total electronic energy density, H(rBCP), also shows similar negative values, approximately −0.010 a.u., indicating comparable covalent characteristics. Furthermore, the ellipticity analysis reveals that the N–Cu interactions in the oxidized forms possess strong cylindrical symmetry, corresponding to a sigma-type interaction between the atoms. In the case of Cu–O interactions, the values for ρ(rBCP) and ∇2ρ(rBCP) are also positive but approximately half and one-third, respectively, of those observed in the N–Cu interactions. The ratio |V(rBCP)|/G(rBCP) and H(rBCP) to Cu–O interactions are like those found in the N–Cu interactions. However, the ellipticity for Cu–O is consistently higher, compared to the N–Cu interactions. This indicates that the Cu–O interaction is less symmetric, with the curvature of the electron density being more pronounced in one direction within the plane perpendicular to the bond path for these interactions, this can be observed in Fig. 6. Similar observations can be made in the oxidized forms of complexes 3 and 6; however, in these cases, the ellipticity is similar between N–Cu and Cu–O interactions. For the reduced forms of complexes 1–9, a decrease in electron density at the BCPs corresponding to the Cu–N and Cu–O interactions is observed. However, the decrease is more pronounced in the latter case. Additionally, for the Cu–O interaction, there is a decrease in the |V|/G ratio, an increase in H(r) reaching a positive value, and a rise in ellipticity. These factors, together with the elongation of the Cu–O distance, suggest that the reduced form involves the decoordination of the O2 molecule (see eqn (7) and (8)).
The plot of the reduced gradient differs from QTAIM by revealing both covalent and non-covalent interactions.47 The analysis of the plots of the reduced gradient extends beyond QTAIM by identifying regions in space where electron density accumulates, thereby identifying areas where non-covalent interactions occur.48,49 Additionally, it offers the advantage of mapping reduced gradient isosurfaces with a color scale that reflects the electron density multiplied by the sign of the second eigenvalue of the Hessian matrix. This feature allows for the differentiation of interaction types, such as steric/repulsive (λ2 > 0), van der Waals-like (λ2 ≈ 0), and attractive (λ2 < 0) interactions. Fig. 6 shows the isosurfaces of the reduced gradient. On the left, the structures of the Cu2+ complexes with O2˙− (reactants) are displayed, while on the right, the structures of the Cu+ complexes with O2 (products) are presented. The corresponding reduced gradient vs. sign(λ2)ρ(r) (NCI plot 2D) plots are also included. For the reactants, a relatively strong interaction between the superoxide and Cu can be observed, with a density at the BCP of approximately 0.04 a.u. in both cases A and B. This interaction corresponds to the third peak from left to right in the nciplot 2D graph. In both cases, the first two peaks, one at ∼ −0.08 and the other at ∼−0.07 (sign(λ2)ρ(r)), correspond to the N(1,2)–Cu and N(3,4)–Cu interactions, respectively. The first noticeable feature in the products is the decrease in interaction strength, expressed as a reduction in the isocontour volume and its associated density. This interaction appears as a peak at approximately −0.012 in sign(λ2)ρ(r), which falls within the range of what could be considered as a van der Waals interaction. Additionally, there is a decrease in the strength of the interactions between the nitrogen atoms and the Cu+ atom, with a shift in the peak corresponding to the N(1,2)–Cu interactions from approximately −0.08 to −0.04. This decrease is less pronounced in the N(3,4)–Cu interactions, which shift from −0.07 to −0.06. These observations suggest a modification in the Cu complexes and a decrease in the Cu–O interaction strength, consistent with our previous findings.
Finally, the interaction energies (ΔE) between the copper complexes and oxygen species for the reactants and products were calculated. To minimize the basis set superposition error (BSSE), we applied the counterpoise method, treating the system as two fragments: the copper complex and the oxygen.50 The BSSE-corrected results are shown in Table 3, where it is observed that the Cu2+ interaction with the superoxide is much stronger than the interaction between Cu+ and oxygen in agreement with the results derived from the topological analysis. This lower interaction energy in the reduced complex is an indication of the plausible decoordination of the oxygen, in this way neutralizing the superoxide.
Complex | ΔE (kcal mol−1) | |
---|---|---|
Cu(II) complexes – superoxide | Cu(I) complexes – dioxygen | |
1 | −91.4 | −4.9 |
2 | −91.6 | −4.3 |
3 | −77.1 | −5.0 |
4 | −92.0 | −4.9 |
5 | −92.0 | −4.9 |
6 | −92.1 | −4.9 |
7 | −91.1 | −5.1 |
8 | −91.8 | −5.1 |
9 | −92.2 | −5.2 |
The combined analysis of the reaction free energies for the intermediate formation together with the topological analysis as well as the evaluation of the interaction of the oxygen species before and after copper reduction confirm that the participation of these complexes in facilitating the conversion of superoxide into molecular dioxygen is feasible. This behavior is similar in the 9 evaluated complexes.
Footnote |
† Electronic supplementary information (ESI) available. See DOI: https://doi.org/10.1039/d4ra07126c |
This journal is © The Royal Society of Chemistry 2024 |