Open Access Article
Lamya H. Al-Wahaibia,
Essmat M. El-Sherefb,
Hendawy N. Tawfeekbc,
Hesham A. Abou-Ziedd,
Safwat M. Rabeae,
Stefan Bräse*f and
Bahaa G. M. Youssif
*g
aDepartment of Chemistry, College of Sciences, Princess Nourah Bint Abdulrahman University, Riyadh 11671, Saudi Arabia
bChemistry Department, Faculty of Science, Minia University, El Minia, 61519, Egypt
cUnit of Occupational of Safety and Health, Administration Office of Minia University, El-Minia, 61519, Egypt
dMedicinal Chemistry Department, Faculty of Pharmacy, Deraya University, Minia, Egypt
eMedicinal Chemistry Department, Faculty of Pharmacy, Minia University, Minia 61519, Egypt
fInstitute of Biological and Chemical Systems, IBCS-FMS, Karlsruhe Institute of Technology, Karlsruhe 76131, Germany. E-mail: braese@kit.edu
gDepartment of Pharmaceutical Organic Chemistry, Faculty of Pharmacy, Assiut University, Assiut 71526, Egypt. E-mail: bgyoussif2@gmail.com; Tel: +20-01098294419
First published on 21st October 2024
Dual targeting of EGFR and HER2 is a valid anti-cancer approach for treating solid tumors. We designed and synthesized a new series of EGFR/HER-2 dual-target inhibitors based on quinoline derivatives. The structure of the newly synthesized compounds was verified using 1H NMR, 13C NMR, and elemental analysis. The targeted compounds were tested for antiproliferative efficacy against four cancer cell lines. All the compounds had GI50s ranging from 25 to 82 nM, with breast (MCF-7) and lung (A-549) cancer cell lines being the most sensitive. Compound 5a demonstrated the most significant antiproliferative action. With inhibitory (IC50) values of 71 and 31 nM, respectively, compound 5a proved to be the most effective dual-target inhibitor of EGFR and HER-2, outperforming the reference erlotinib (IC50 = 80 nM) as an EGFR inhibitor but falling short of the clinically used agent lapatinib (IC50 = 26 nM) as a HER2 inhibitor. The apoptotic potential activity of 5a was examined, and the findings demonstrated that 5a promotes apoptosis by activating caspase-3, 8, and Bax while simultaneously reducing the expression of the anti-apoptotic protein Bcl-2. The docking studies provided valuable insights into the binding interactions of compounds 3e and 5a with EGFR, effectively rationalizing the observed SAR trends.
In the body, human epidermal growth factor receptors (HERs) are a group of receptor protein tyrosine kinases (RPTKs) that help control many functions, such as cell growth, proliferation, and differentiation. Many investigations have shown that the HER protein kinase family is vital in promoting cancer advancement by affecting the release of pro-angiogenesis factors from cancer cells.14,15 Four closely similar isoforms of HERs have been identified, all possessing tyrosine kinase activity. These isoforms are EGFR (sometimes referred to as HER-1), HER-2, HER-3, and HER-4. Different cancer cells significantly upregulate epidermal growth factor receptor (EGFR), which plays a crucial role in cell signaling transmission and tumor behaviors.16,17 The use of four generations of EGFR single target inhibitors (Fig. 1), namely gefitinib, erlotinib, osimertinib, rociletinib, cetuximab, and necitumumab, has significantly advanced in both clinical and pre-clinical studies for the treatment of various cancer types, including breast cancer, bowel cancer, and non-small cell lung cancer (NSCLC).18–21 Unfortunately, EGFR mutations and compensatory mechanisms have significantly restricted the therapeutic effectiveness of EGFR single-target medicines.
As a result, the development of dual inhibitors that target both EGFR and other compensatory targets has the potential to be a new therapeutic strategy to counteract drug resistance in clinical settings and merits further investigation. Studies have shown that long-term use of the EGFR inhibitor gefitinib can downregulate EGFR expression but upregulate HER2. However, anti-EGFR therapy alone can only suppress EGFR-mediated downstream signals, with minimal effect on HER-2-caused ones.22,23 Because of this, targeting both EGFR and HER-2 simultaneously might be an effective way to get around the resistance seen with single-agent therapy (Fig. 2).
Quinoline has been one of the most important scaffolds in drug discovery over the past few decades, particularly in cancer research. Quinoline, an N-based heterocyclic compound, has diverse biological actions. 24,25 Quinoline-containing compounds have significantly enhanced basicity due to the presence of nitrogen atoms. Clinical trials currently examine many anticancer drugs incorporating the quinoline structure.26–28 Quinoline derivatives are very good at fighting cancer through several pathways, such as blocking tyrosine kinase, blocking EGFR, and blocking mitogen-activated protein kinases, etc.29,30 Quinoline-derived anticancer drugs include bosutinib, lenvatinib, and cabozantinib, which are protein kinase inhibitors. Quinoline derivatives have shown promise in several cancer cell lines, such as those derived from the breast, colon, lung, colorectal, renal, and so on.31–33
Additionally, Schiff's bases are a significant category of therapeutic compounds with biological activity that has captured the interest of medicinal chemists because of their diverse range of pharmacological properties. Several researchers are synthesizing these molecules into pharmaceuticals to effectively treat diseases with the lowest toxicity and maximum efficacy.34,35 These predictions have provided a therapeutic approach for developing novel and potent biologically active Schiff's base derivatives. Documentation has shown that several derivatives of Schiff's base exhibit a wide range of biological activities, with anticancer properties being the most prominent.36,37
Makawana et al.38 have synthesized a series of quinoline/Schiff base-based compounds that act as anticancer agents, specifically targeting both EGFR and HER2. The results indicated that most of the compounds had potent antiproliferative effects and effectively inhibited the activities of EGFR and HER-2. Compound VII (Fig. 3) had the highest level of inhibition against EGFR (IC50 = 0.12 ± 0.05 μM) compared to erlotinib (IC50 = 0.032 ± 0.002 μM). In addition, compound 5h showed significant inhibition of HER2 with an IC50 value of 2.18 ± 0.08 μM, whereas erlotinib had an IC50 value of 0.16 ± 0.02 μM.
Our recent studies39 focused on developing and synthesizing novel quinoline-based compounds as potential antiproliferative agents. We evaluated the newly synthesized compounds' antiproliferative activity against a panel of four human cancer cell lines. Compound VIII (Fig. 3) was more effective than the standard drug doxorubicin against the four cancer cell lines (GI50 = 1.40 μM vs. 1.20 μM for VIII). The compound VIII was the most effective at blocking EGFR and BRAFV600E, with IC50 values of 105 ± 10 nM and 140 ± 12 nM, respectively. These values were similar to those of the standard drug erlotinib, which had IC50 values of 80 ± 10 nM and 60 ± 10 nM, respectively. In another publication,40 we describe synthesizing a novel series of quinoline-based compounds used as antiproliferative agents against EGFR and BRAFV600E. Compound IX (Fig. 3) had superior antiproliferative activity compared to doxorubicin (GI50 = 1.15 μM). It exhibited a GI50 value of 3.30 μM against four human cancer cell lines. The compound exhibited inhibitory efficacy against EGFR and BRAFV600E, with IC50 values of 1.30 ± 0.12 μM and 3.80 ± 0.15 μM, respectively. In comparison, the reference erlotinib had IC50 values of 0.08 ± 0.005 μM and 0.06 ± 0.01 μM for EGFR and BRAFV600E, respectively.
On the other hand, Weissner et al. demonstrated that the N-3 position of the quinazoline ring could be replaced with a C–X, where X represents an electron-withdrawing group.42 This study presents the development, synthesis, and biological investigation of new dual inhibitors targeting EGFR and HER-2. We selected lapatinib as the lead compound for these inhibitors. The plan includes assembling a quinoline core scaffold with an Azomethine (Schiff base) group at position 3 and a hydrophobic tail with a heterocyclic structure. The hydrophobic tail can be either a 1,2,4-triazole moiety (Compounds 3a–h, Scaffold A) or a phenyl-pyrimidine-2-sulphonamide moiety (Compounds 5a–e, Scaffold B), Fig. 4.
The newly synthesized compounds 3a–h and 5a–d will be evaluated for their antiproliferative activity against a panel of four cancer cell lines. The most promising compounds will be further investigated as dual EGFR/HER2 inhibitors. Moreover, the apoptotic potential activity of the most potent compounds will be investigated. Finally, we will perform molecular docking analysis to determine these drugs' potential binding mechanisms and interactions with receptor sites.
Starting materials: all 4-hydroxy-2-oxo-1,2-dihydroquinoline-3-carbaldehydes 1a–d were synthesized according to the literature.43 Also, 3-aryl-1H-1,2,4-triazole-5-amines 2a and 2b,44 and N-(4-aminophenyl)pyrimidine-2-sulfonamide (4)45 were prepared according to reported literature.
N), 8.05–7.11 (m, 9H, Ph-H and quinoline-H); 13C NMR (DMSO-d6): δC = 163.12 (C-2), 161.74 (C-4), 157.11 (C-3′), 152.54 (C-5′), 151.74 (CH
N), 141.53 (C-8a), 140.87 (Ar-C), 134.54 (C-7), 134.18 (C-6), 130.86 (C-7), 129.19, 126.16, 125.81 (Ar-CH), 120.20 (C-5), 118.44 (C-8), 91.20 ppm (C-3). m/z = 331; Anal. Calcd. For C18H13N5O2: C, 65.25; H, 3.95; N, 21.14. Found: C, 65.35; H, 4.08; N, 20.99.
N), 8.04(d, J = 5.1 Hz, 2H, H-7,8), 7.76 (s, 1H; H-5), 7.56–7.08 (m, 5H, Ph-H), 2.33 ppm (s, 3H; CH3); 13C NMR (DMSO-d6): δC = 163.48 (C-2), 162.20 (C-4), 156.84 (C-3′), 152.68 (C-5′), 151.20 (CH
N), 139.46 (C-6), 137.22 (Ar-C), 135.41 (C-7), 132.17 (C-5), 131.75 (C-8a), 128.75, 127.34, 125.64 (Ar-CH), 122.39 (C-4a), 118.16 (C-8), 95.20 (C-3), 21.12 ppm (CH3). m/z = 345; Anal. Calcd. For C19H15N5O2: C, 66.08; H, 4.38; N, 20.28. Found: C, 65.91; H, 4.17; N, 20.11.
N), 8.04 (t, J = 2.4, 5.7 Hz, 2H; Ph-H-o), 7.57–7.12 (m, 6H, Ph-H and quinoline-H), 3.75 ppm (s, 3H; OCH3). m/z = 361; Anal. Calcd. For C19H15N5O3: C, 63.15; H, 4.18; N, 19.38. Found: C, 63.22; H, 4.09; N, 19.47.
N), 8.01 (d, J = 10.5 Hz, 2H, Ph-H-o), 7.62–7.17 (m, 7H, Ph-H, quinoline-H), 3.45 ppm (s, 3H; N–CH3); 13C NMR (DMSO-d6): δC = 162.24 (C-2), 158.42 (C-4), 156.79 (C-3′), 153.58 (C-5′), 152.24 (CH
N), 148.58 (C-8a), 135.39 (Ar-C), 134.30 (C-7), 130.16 (C-5), 129.32 (C-6), 129.32, 128.67, 126.24 (Ar-CH), 122.41 (C-4a), 118.82 (C-8), 90.53 (C-3), 20.87 (CH3). m/z = 345; Anal. Calcd. For C19H15N5O2: C, 66.08; H, 4.38; N, 20.28. Found: C, 66.17; H, 4.22; N, 20.35.
N), 8.74 (d, J = 5.1 Hz, 2H; pyridine-H-3′′), 7.91 (d, J = 4.8 Hz, 2H; pyridine-H-2′′), 7.53 (m, 2H; quinoline-H), 7.12 ppm (m, 2H; quinoline-H). m/z = 332; Anal. Calcd. For C17H12N6O2: C, 61.44; H, 3.64; N, 25.29. Found: C, 61.35; H, 3.77; N, 25.41.
N), 8.76 (d, J = 4.8 Hz, 2H; pyridine-H-3′′), 7.93 (d, J = 6.3 Hz, 2H; pyridine-H-2′′), 7.73 (s, 1H; quinoline-H-5), 7.39 (d, J = 7.8 Hz, 1H; quinoline-H-7), 7.09 (d, J = 7.8 Hz, 1H; quinoline-H-8), 2.31 ppm (s, 3H, CH3). m/z = 346; Anal. Calcd. For C18H14N6O2: C, 62.42; H, 4.07; N, 24.27. Found: C, 62.38; H, 3.99; N, 24.33.
N), 8.75 (d, J = 8.1 Hz, 2H; pyridine-H-3′′), 7.91 (s, 1H; quinoline-H-5), 7.36 (d, J = 6.3 Hz, 2H; pyridine-H-2′′), 7.14 (d, J = 9 Hz, 2H; quinoline-H-7,8), 3.77 ppm (s, 3H, OCH3). m/z = 362; Anal. Calcd. For C18H14N6O3: C, 59.67; H, 3.89; N, 23.19. Found: C, 59.82; H, 3.71; N, 23.33.
N), 8.75 (d, J = 4.8 Hz, 2H; pyridine-H-3′′), 7.91 (d, J = 4.5 Hz, 2H; pyridine-H-2′′), 7.76–7.21 (m, 4H; quinoline-H), 3.48 ppm (s, 3H, N–CH3). m/z = 346; Anal. Calcd. For C18H14N6O2: C, 62.42; H, 4.07; N, 24.27. Found: C, 62.56; H, 4.11; N, 24.13.
N), 8.51–7.05 ppm (m, 11H, quinoline-H, Ph-H and pyrimidine-H). m/z = 421; Anal. Calcd. For C20H15N5O4S: C, 57.00; H, 3.59; N, 16.62. Found: C, 56.93; H, 3.66; N, 16.75.
N), 8.52 (d, J = 5.1 Hz, 2H; pyrimidine-H-4), 8.04–8.01 (dd, J = 3, 2.7 Hz, 2H, quinoline-H-7,8), 7.77–7.70 (q, 1H; pyrimidine-H-5), 7.39 (d, J = 8.4 Hz, 2H, H-o), 7.01–7.04 (m, 3H; H-m, quinoline-H-5), 2.31 ppm (s, 3H, CH3). m/z = 435; Anal. Calcd. For C21H17N5O4S: C, 57.92; H, 3.93; N, 16.08. Found: C, 58.01; H, 3.88; N, 15.95.
052 °C; 1H NMR (DMSO-d6): δH = 13.52 ppm (s, 1H, OH), 11.82 (quinoline-NH), 9.80 (SO2NH), 9.77 (s, 1H; CH
N), 8.93 (d, J = 12.6 Hz, 2H; pyrimidine-H-4), 8.52–7.00 (m, 8H, Ph-o,m, pyrimidine-H-5, quinoline-CH), 3.59 ppm (s, 3H, OMe). m/z = 451; Anal. Calcd. For C21H17N5O5S: C, 55.87; H, 3.80; N, 15.51. Found: C, 55.77; H, 3.98; N, 15.66.
N), 8.52–7.00 (m, 11H, Ph-o, m, pyrimidine-H-5, quinoline-CH), 3.48 ppm (s, 3H, CH3). m/z = 435; Anal. Calcd. For C21H17N5O4S: C, 57.92; H, 3.93; N, 16.08. Found: C, 57.79; H, 3.87; N, 15.98.
All the compounds obtained are the product of a simple and generally recognized condensation process, eliminating the need for additional processes and analyses to confirm their chemical composition. Accordingly, 1H NMR, 13C NMR spectra, and elemental analysis were used. Compound 3f, namely (E)-4-hydroxy-6-methyl-3-(((3-(pyridin-4-yl)-1H-1,2,4-triazol-5-yl)imino)methyl)quinolin-2(1H)-one (Fig. 5), was chosen for further studies. The 1H NMR spectra of 3f has four shielding singlet lines at δH = 13.61, 12.92, 11.01, and 9.01 ppm. These signals are identified as OH, quinoline-NH, triazole-NH, and CH
N groups.
The quinoline-H-5, H-7, and H-8 chemical shifts were seen to be consistent with the reported values 51–53 at δH = 7.73 (singlet, 1H), 7.39 (doublet, J = 7.8 Hz, 2H), and 7.09 ppm (doublet, J = 7.8 Hz, 2H), respectively. Additionally, the pyridinyl group is identified by its 1,4-disubstituted benzene ring structure, which is evident in the 1H NMR spectrum as a doublet–doublet pattern at δH of 8.76 ppm (d, J = 4.8 Hz, 2H; pyridine-H-3′′) and 7.93 ppm (d, J = 6.3 Hz, 2H; pyridine-H-2′′). The 13C NMR spectrum of 3b (Fig. 5), (E) 4-hydroxy-6-methyl-3-(((3-phenyl-1H-1,2,4-triazol-5-yl)imino)methyl)-quinolin-2(1H)-one, displays veiled common signals at specified chemical shifts. The signals at δC = 163.48, 162.20, 156.84, 152.68, and 151.20 ppm correspond to C-2, C-4, C-3′, C-5′, and CH
N. There is also a signal at 21.12 ppm, which corresponds to a methyl group.
| Comp. | Cell viability% | Antiproliferative activity IC50 ± SEM (nM) | ||||
|---|---|---|---|---|---|---|
| A-549 | MCF-7 | Panc-1 | HT-29 | Average (GI50) | ||
| 3a | 89 | 72 ± 7 | 69 ± 6 | 74 ± 7 | 74 ± 7 | 72 |
| 3b | 90 | 70 ± 6 | 67 ± 6 | 70 ± 6 | 71 ± 6 | 70 |
| 3c | 87 | 50 ± 5 | 46 ± 4 | 54 ± 5 | 52 ± 4 | 51 |
| 3d | 89 | 76 ± 7 | 74 ± 7 | 76 ± 7 | 77 ± 7 | 76 |
| 3e | 86 | 32 ± 3 | 31 ± 3 | 34 ± 3 | 34 ± 3 | 33 |
| 3f | 90 | 62 ± 6 | 59 ± 5 | 65 ± 6 | 64 ± 6 | 63 |
| 3g | 89 | 64 ± 6 | 60 ± 6 | 64 ± 6 | 66 ± 6 | 64 |
| 3h | 85 | 82 ± 8 | 78 ± 7 | 86 ± 8 | 82 ± 8 | 82 |
| 5a | 87 | 25 ± 2 | 23 ± 2 | 26 ± 2 | 26 ± 2 | 25 |
| 5b | 90 | 39 ± 4 | 35 ± 4 | 41 ± 4 | 40 ± 3 | 39 |
| 5c | 86 | 53 ± 5 | 49 ± 4 | 54 ± 5 | 55 ± 5 | 53 |
| 5d | 90 | 46 ± 4 | 42 ± 4 | 48 ± 4 | 48 ± 4 | 46 |
| Erlotinib | ND | 30 ± 3 | 40 ± 3 | 30 ± 3 | 30 ± 3 | 33 |
Generally, compounds 3a–h and 5a–d had significant antiproliferative activity, with GI50 values ranging from 25 to 82 nM when compared to the reference erlotinib (GI50 = 33 nM). Furthermore, all evaluated compounds showed greater affinity to the breast cancer (MCF-7) cell line than to the other cell lines tested. Compounds 3e, 5a, 5b, and 5d had the most antiproliferative activity, with GI50 values of 33, 25, 39, and 46 nM, respectively. Derivatives 3e, 5a, and 5b outperformed erlotinib against the breast MCF-7 cancer cell line. Their IC50 values were 31, 23, and 35 nM, respectively, whereas erlotinib had an IC50 value of 40 nM.
Compound 5a (R1 = R2 = R3 = R4 = R5 = H, Scaffold B) outperformed all of the other compounds tested. It had a GI50 of 25 nM, making it 1.3 times more active than erlotinib (GI50 = 33 nM) against the four cancer cell lines studied. Compound 5a demonstrated a significant antiproliferative activity against the breast cancer (MCF-7) cell line with an IC50 value of 23 nM, which was two times more potent than erlotinib's IC50 value of 40 nM. Additionally, compound 5a exhibits a slightly higher potency than erlotinib against the remaining three cell lines, Table 1.
The antiproliferative activity of compounds 3a–h and 5a–d is significantly affected by the substitution pattern at position one (N1) and position six of the quinoline moiety. For example, compound 5d (R1 = Me, R2 = R3 = R4 = R5 = H, Scaffold B), a derivative with a methyl group linked to the nitrogen atom (N-methyl derivative), was shown to be less efficient as antiproliferative agent than 5a (R1 = R2 = R3 = R4 = R5 = H, Scaffold B). Compound 5d had a GI50 of 46 nM, two times lower than 5a, demonstrating that the presence of a free nitrogen atom at position 1 (N-1) of the quinoline moiety is more tolerated for antiproliferative activity than the N-methyl group. Another example includes the 6-methyl derivative, compound 5b (R3 = Me, R1 = R2 = R4 = R5 = H, Scaffold B), and the 6-methoxy derivative, 5c (R3 = OMe, R1 = R2 = R4 = R5 = H, Scaffold B), both of which were revealed to be less effective than the unsubstituted derivative, 5a (R1 = R2 = R3 = R4 = R5 = H, Scaffold B). Compounds 5b and 5c exhibit IC50 values of 39 and 53 nM, respectively, which are 1.6 and 2.2-folds less potent than 5a (GI50 = 25 nM). These findings suggest that derivatives with an unsubstituted quinoline moiety are more efficient than derivatives substituted with electron-donating methyl and methoxy groups. However, in order to achieve an appropriate SAR (structure–activity relationship), derivatives of the quinoline moiety's phenyl ring must be substituted with an electron-drawing group such as a halogen atom or nitro group. This precise modification is now being explored in our lab.
Compound 3e (R1 = R2 = R3 = R4 = R5 = H, X = N, Scaffold A) demonstrated the second highest activity with a GI50 value of 33 nM, which is equivalent to the reference erlotinib (GI50 = 33). However, 3e exhibited greater activity than Erlotinib against the breast cancer MCF-7 cell line, as shown in Table 1. Substituting the C6–H of the quinoline moiety in compound 3e with C6-methyl in compound 3f (R3 = Me, R1 = R2 = R4 = R5 = H, X = N, Scaffold A) or with a methoxy group in compound 3g (R3 = OMe, R1 = R2 = R4 = R5 = H, X = N, Scaffold A) resulted in a significant decrease in antiproliferative activity. The GI50 values for 3f and 3g were 63 and 82 nM, respectively, which were 1.9- and 2.5-fold less potent than 3e (GI50 = 33 nM). This supports the notion that the quinoline moiety's unsubstituted phenyl ring was more tolerated for activity.
Moreover, in 3e's pyridine ring, replacing the nitrogen atom with carbon one (phenyl ring) resulted in a confirmed drop in antiproliferative activity. Compound 3a (R1 = R2 = R3 = R4 = R5 = H, X = CH, Scaffold A) is the phenyl derivative of compound 3e. Its GI50 value is 72 nM, making it two times less potent than compound 3e. This indicates that the antiproliferative activity of the 1,2,4-triazole derivatives favors the pyridine ring over the phenyl one.
Finally, it is worth mentioning that compounds 3e and 5a exhibit the most potent antiproliferative activity against all the examined cell lines, particularly the lung cancer A-549 and breast cancer MCF-7 cell lines. Compound 5a exhibited IC50 values of 25 and 23 nM against A-549 and MCF-7 cell lines, respectively, making it more efficient than erlotinib against both cell lines (erlotinib's IC50 values were 30 and 40 nM, respectively). Compound 3e, the second most active compound, exhibited IC50 values of 32 and 31 nM, indicating more potency than erlotinib against the breast MCF-7 cell line. However, it displayed similar potency to erlotinib against the lung A-549 cell line.
| Compound | EGFR inhibition IC50 ± SEM (nM) | HER-2 inhibition IC50 ± SEM (nM) |
|---|---|---|
| 3e | 79 ± 5 | 39 ± 2 |
| 5a | 71 ± 4 | 31 ± 2 |
| 5b | 85 ± 5 | 47 ± 3 |
| 5d | 93 ± 5 | 53 ± 3 |
| Erlotinib | 80 ± 5 | — |
| Lapatinib | — | 26 ± 1 |
The results of this assay are consistent with the results of the antiproliferative assay, which showed that compounds 5a (R1 = R2 = R3 = R4 = R5 = H, Scaffold B) and 3e (R1 = R2 = R3 = R4 = R5 = H, X = N, Scaffold A), the most potent antiproliferative agents, were the most effective derivatives of EGFR inhibitors, with IC50 values of 71 ± 4 and 79 ± 5, respectively. Compound 5a exhibited more potency than erlotinib as an EGFR inhibitor, while compound 3e proved comparable efficacy to erlotinib. Compounds 5b and 5d showed significant inhibition of EGFR, with IC50 values of 85 and 93 nM, respectively. These compounds had slightly lower potency than erlotinib, Fig. 6. These findings imply that compounds 3e and 5a are highly efficient antiproliferative candidate that may operate as an EGFR inhibitor.
We analyzed compounds 3e and 5a, which showed the highest potency in all laboratory tests, to determine their capacity to trigger the apoptosis cascade and exhibit proapoptotic activity.
| Compd no. | Caspase-3 | Caspase-8 | Bax | Bcl-2 | ||||
|---|---|---|---|---|---|---|---|---|
| Conc. (pg ml−1) | Fold change | Conc. (ng ml−1) | Fold change | Conc. (pg ml−1) | Fold change | Conc. (ng ml−1) | Fold reduction | |
| 3e | 587 ± 5 | 9 | 1.65 ± 0.20 | 19 | 316 ± 3 | 35 | 0.84 | 6 |
| 5a | 710 ± 6 | 11 | 1.70 ± 0.15 | 21 | 350 ± 3 | 39 | 0.62 | 8 |
| Staurosporine | 465 ± 4 | 7 | 1.60 ± 0.10 | 18 | 288 ± 2 | 32 | 1.00 | 5 |
| Control | 65 | 1 | 0.09 | 1 | 9 | 1 | 5.00 | 1 |
In MCF-7 cells, treatment with compound 5a at its IC50 concentration significantly increased the expression levels of active caspases 3 and 8. The expression of active caspase-3 was upregulated 11 times, while active caspase-8 increased by 21 times (Table 3). When cells are treated with Compound 3e, the levels of caspase-3 and caspase-8 go up a lot—by 9 and 19 times more, respectively, than when the cells were not treated. In all cases, compounds 3e and 5a were more effective as caspase-3 and 8 activators than the reference Staurosporine.
![]() | ||
| Fig. 8 Docking representation models of compound 5a within the binding site of EGFR; (A) 2D-docked model of compound 5a; (B) 3D-docked model of compound 5a. | ||
Similarly, compound 3e, featuring a pyridine-substituted triazole moiety, demonstrated a favorable binding pose (−7.04 kcal mol−1) within the EGFR active site. The pyridine ring's nitrogen atom enhances binding by forming a crucial hydrogen bond with a MET769, and the quinoline nitrogen engages in effective H-bonding with ASN818 residue (Fig. 9). As a result, the combination of the pyridine-substituted triazole and the unsubstituted quinoline ring allows 3e to maximize its binding interactions within the pocket, leading to a strong docking score and high binding affinity (Fig. 9).
![]() | ||
| Fig. 9 Docking representation models of compound 3e within the binding site of EGFR; (A) 2D-docked model of compound 3e; (B) 3D-docked model of compound 3e. | ||
Compound 5b, which includes a methyl group at position 6 of the quinoline ring, exhibited a moderately favorable binding pose (−6.31 kcal mol−1). However, the methyl group introduces steric hindrance that slightly disrupts the optimal interaction between the quinoline ring and the hydrophobic pocket. This alteration in binding dynamics reduces π–π stacking and hydrophobic interactions—the quinoline ring results in one H-bonding interaction with ASP831 and π-alkyl with Val702 (Fig. 10). The methyl group also affects the orientation of the pyrimidine sulfonamide moiety, leading to a less bonding pattern than 5a. The docking results are consistent with the SAR observation that methyl substitution at position 6 of the quinoline ring reduces antiproliferative activity. The steric hindrance introduced by the methyl group in 5b disrupts key interactions within the binding pocket, decreasing binding affinity and biological activity (Fig. 10).
![]() | ||
| Fig. 10 Docking representation models of compound 5b within the binding site of EGFR; (A) 2D-docked model of compound 5b; (B) 3D-docked model of compound 5b. | ||
Compound 5d, which features a methyl group at position 1 of the quinoline ring, showed the least favorable binding pose (−5.72 kcal mol−1) among the compounds studied. The methyl group at position 1 disrupts the planarity of the quinoline ring, reducing its ability to participate effectively in π–π stacking interactions. Additionally, this substitution alters the orientation of the entire molecule within the binding site, leading to suboptimal hydrogen bonding with GLU780 and Pi-sigma interactions with LEU694 residues (Fig. 11). The methyl group also causes the sulfonamide moiety to adopt a less favorable conformation, weakening the overall binding affinity. The docking results corroborate the SAR findings that methyl substitution at position 1 of the quinoline ring is detrimental to antiproliferative activity. Due to this substitution, the disruption of key interactions within the EGFR binding site explains the reduced activity 5d compared to the unsubstituted 5a.
![]() | ||
| Fig. 11 Docking representation models of compound 5d within the binding site of EGFR; (A) 2D-docked model of compound 5d; (B) 3D-docked model of compound 5d. | ||
The docking studies yielded significant information on the binding interactions of compounds 5a, 3e, 5b, and 5d with EGFR, providing a clear rationale for the observed SAR trends. Compound 5a, featuring an unsubstituted quinoline ring and pyrimidine sulfonamide moiety, exhibited the most favorable interactions and highest binding affinity, aligning with its superior biological activity. Compound 3e, with its pyridine-substituted triazole moiety, showed robust binding interactions, particularly due to the nitrogen atom in the pyridine ring, which enhances its antiproliferative potency. Conversely, electron-donating groups (Me) at positions 1 or 6 of the quinoline ring, as seen in compounds 5b and 5d, led to reduced binding affinity and antiproliferative activity. These findings underscore the importance of maintaining an unsubstituted quinoline ring and carefully selecting substituents on the triazole and pyrimidine moieties to optimize the binding interactions and enhance the antiproliferative activity of these compounds.
(2) Scaffold B compounds (5a–d), which contain pyrimidine-2-sulphonamide moiety, are more active than scaffold A compounds (3a–h). The pyrimidine sulfonamide moiety interacts with Lys 721, a critical residue, via pi-cation. Moreover, the sulfonamide group engages in hydrogen bonding interactions with Thr830, which further stabilizes the binding.
(3) Among the scaffold A compounds, 3e–h (X = N) are more reactive than 3a–d (X = C–H). In the pyridine-1,2,4-triazole moiety-based derivatives 3e–h, the pyridine ring's nitrogen atom improves binding to EGFR receptors by establishing a hydrogen bond with the crucial MET769 residue, increasing activity.
(4) For compounds 3a–h and 5a–d, the free nitrogen atom (R1 = H) at position 1 of the quinoline moiety is essential for activity. The methyl group at position 1 breaks the quinoline ring's planarity, making it less effective in π–π stacking interactions. Furthermore, this replacement changes the overall orientation of the molecule within the binding site.
(5) Substitution at position 6 of the quinoline moiety decreases activity. The unsubstituted quinoline ring provides excellent planarity and interaction within the hydrophobic pocket.
Footnote |
| † Electronic supplementary information (ESI) available. See DOI: https://doi.org/10.1039/d4ra06394e |
| This journal is © The Royal Society of Chemistry 2024 |