Open Access Article
Prajwal Naik C.a,
Ashoka G. B.b,
Asiful H. Seikhc and
Saikat Dutta
*a
aDepartment of Chemistry National Institute of Technology Karnataka (NITK) Surathkal, Mangalore 575025, India. E-mail: sdutta@nitk.edu.in
bDepartment of PG Studies and Research in Applied Botany, Kuvempu University, Jnanasahyadri, Shankaraghatta 577451, Karnataka, India
cMechanical Engineering Department, College of Engineering, King Saud University, Riyadh 11421, Saudi Arabia
First published on 8th July 2024
Bis(indolyl)methanes (BIMs) are important heterocycle-containing molecular scaffolds that show remarkable biological and pharmacological activities. This work reports the synthesis of novel BIMs using carbohydrate-derived 5-substituted-2-furaldehydes as renewable reactants. Structural diversity was introduced in the BIMs as substituents in the indole and furaldehyde moieties. Various commonly encountered biorenewable carboxylic acids were screened as catalysts for the acid-catalyzed transformation under organic solvent-free conditions. All the novel BIMs were characterized by spectroscopic techniques (FTIR, 1H-NMR, 13C-NMR) and elemental analysis. The reaction was optimized on the reaction temperature, duration, catalyst type, and catalyst loading. The gluconic acid aqueous solution (GAAS) showed the best catalytic activity for the transformation, affording satisfactory isolated yields (68–96%) of the targeted BIMs under optimized conditions. The GAAS catalyst was conveniently recovered from the reaction mixture and reused for four consecutive cycles without catastrophic loss in either mass or activity. Moreover, the antibacterial activities of the novel BIMs were studied on Gram-positive and Gram-negative bacterial strains, such as Enterococcus faecalis and Pseudomonas syringae.
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| Scheme 1 (A) Biorenewable synthesis of HMF and gluconic acid from carbohydrates, and (B) GAAS-catalyzed synthesis of novel BIMs starting from SFLs and indoles. | ||
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2 molar ratio and magnetically stirring the mixture at elevated temperatures. The reaction progress was monitored by using TLC for the disappearance of MF. The control reaction, performed without a catalyst, resulted in a 20% yield of 1b after 24 h. The low yield was due to slow kinetics and low conversion of MF at room temperature. When the temperature was raised to 80 °C, the reaction gave a 60% yield of 1b after 12 h. However, the reaction remained incomplete, and partial decomposition of MF was observed. The synthesis of 1b was then attempted using the aqueous solution of different biogenic acids as catalysts. When the reaction was carried out at 80 °C using roughly 1
:
2 molar ratio of MF and indole in the presence of 50 mol% of GAAS (50%, aq.), an 88% isolated yield of 1b was obtained. Table 1 shows the influence of various biorenewable carboxylic acids in the aqueous solution as an acid catalyst for synthesizing 1b. The reaction temperature was fixed at 80 °C, and the reaction was continued till the complete conversion of MF. Three carboxylic acids, namely, acetic acid (entry 2), GAAS (entry 4), and lactic acid (entry 5), afforded high isolated yields (>80%) of the targeted product 1b. Lactic acid showed particularly interesting catalytic activity, affording an 84% yield of 1b after 1 h at 80 °C. However, the GAAS catalyst provided higher isolated yields (4–8%) of the targeted BIMs from other SFLs under optimized conditions. Moreover, multiple spots were observed on the TLC plate when lactic acid was used as the catalyst, requiring chromatographic purification of the products. No direct relationship between the pKa of the acid catalyst and its activity (or selectivity) was apparent. 2,5-Furandicarboxylic acid gave only a 54% yield of 1b, possibly due to the low solubility of the acid catalyst in the aqueous medium. Levulinic acid (entry 7) and oxalic acid (entry 9) gave 78% and 76% yields of 1b, respectively. Formic acid (entry 3) afforded a 68% yield of 1b after 3 h at 80 °C, whereas succinic acid (entry 6) gave a 60% yield after 2 h reaction. GAAS was found to be the most efficient catalyst, providing an 88% isolated yield of 1b after 6 h at 80 °C (entry 4). Therefore, further reaction optimizations were performed using GAAS as the catalyst of choice. The transformation was then optimized on various other reaction parameters, such as reaction temperature, catalyst loading, and reaction duration. Initially, the effect of reaction temperature was studied since it affects the reaction kinetics, product selectivity, and stability of reactants, products, and catalysts. When the reaction was performed at RT with 50 mol% GAAS catalyst, the yield of 1b reached 46% after 48 h (Fig. 1). The low yield was due to slow kinetics and incomplete conversion of MF. When the temperature was slightly elevated to 40 °C, the kinetics got faster, and a 40% yield of 1b was obtained within 24 h. Increasing the temperature to 60 °C gave a 72% yield of 1b after 6 h of reaction. The yield of 1b reached maximum at 88% when the reaction was performed for 6 h at 80 °C. However, further increasing the reaction temperature to 100 °C lowered the yield of 1b to 76% due to partial decomposition of MF in aqueous acid at elevated temperature. Therefore, 80 °C was considered the optimum reaction temperature for synthesizing novel BIMs from SFLs. Scaling up the reaction with 2 g of MF gave a 90% isolated yield of 1b under optimized conditions (i.e., 80 °C, 6 h, 50 mol% GAAS). The effect of the loading of the GAAS catalyst on the isolated yield of 1b was studied next. When the loading of GAAS (with respect to the mmol of MF used) was decreased to 25 mol%, a 74% yield of 1b was obtained after 6 h of reaction at 80 °C. The lower yield was due to incomplete conversion of MF due to slower kinetics. However, using an excess catalyst (1 mL of GAAS for 0.250 g of MF) also marginally decreased the yield of 1b (compared to that using 50 mol% GAAS catalyst) due to the accelerated decomposition of MF in the aqueous acid.
| Entry | Catalyst | Time (h) | Yield (%) |
|---|---|---|---|
| a Reaction conditions: MF (0.250 g, 2.27 mmol), indole (0.531 g, 4.53 mmol), catalyst (50 wt% aqueous solution, 50 mol%), 80 °C. | |||
| 1 | No catalyst | 12 | 60 |
| 2 | Acetic acid | 2.5 | 81 |
| 3 | Formic acid | 3 | 68 |
| 4 | GAAS | 6 | 88 |
| 5 | Lactic acid | 1 | 84 |
| 6 | Succinic acid | 2 | 60 |
| 7 | Levulinic acid | 2 | 78 |
| 8 | 2,5-Furandicarboxylic acid | 7 | 54 |
| 9 | Oxalic acid | 2 | 76 |
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| Fig. 1 The effect of reaction temperature on the isolated yield of bis(indolyl)methane 1b. Reaction conditions: MF (0.250 g, 2.27 mmol), indole (0.531 g, 4.53 mmol), GAAS (50 mol%). | ||
The effect of reaction duration on the yield of 1b was studied next by keeping the reaction temperature and the loading of the GAAS catalyst at their optimized values (Fig. 2). A duration of 4 h gave only a 65% isolated yield of 1b due to incomplete conversion of MF. Increasing the reaction duration to 6 h gave an 88% yield of 1b, which remained the same even after 8 h of reaction. Extending the reaction duration to 10 h marginally decreased the yield of 1b to 84% due to partial decomposition of 1b in the aqueous acid at elevated temperature. Recyclability of the catalyst is a crucial factor in organic transformation for favorable green metrics and process economy. Even though GAAS is relatively inexpensive, non-toxic, and sustainably produced from carbohydrates, the recyclability of the GAAS catalyst was explored.
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| Fig. 2 Effect of reaction duration on the isolated yield of 1b. Reaction conditions: MF (0.250 g, 2.27 mmol), indole (0.531 g, 4.53 mmol), GAAS (50 mol%), 80 °C. | ||
Recyclability of the GAAS catalyst was tested under optimized reaction conditions (i.e., 80 °C, 6 h, 50 mol% GAAS). After the reaction, the mixture was cooled to room temperature, poured into crushed ice, and the product was separated by vacuum filtration. The aqueous layer was evaporated under reduced pressure to recover the catalyst. The recycled GAAS catalyst showed good catalytic activity up to four cycles with only a marginal dip in activity (Fig. 3). The slight dip in the catalytic activity of the GAAS catalyst could result from the mass loss of gluconic acid during recycling or its partial lactonization during the evaporation of excess water.
The optimized reaction conditions for 1b were applied to synthesize BIMs (1a–1r). The molecular structure, yield, and antibacterial activity of BIMs 1a–1i, produced by reacting SFLs with two equivalents of indole in the presence of 50 mol% GAAS catalyst, are listed in Table 2. All the SFLs afforded good to excellent isolated yields of the corresponding BIM. HMF and 5-(4-methoxybenzyloxymethyl)furfural gave relatively lower yields (i.e., 68%) of the corresponding BIMs (1e & 1h) (entry 5 & 8, Table 2). The lower yield in the case of HMF was due to the inherent instability of HMF in aqueous acid. When the required amount of HMF was used at a stretch at 60 °C, only a 60% yield of 1e was obtained. The yield of 1e improved to 68% when HMF was added slowly in portions to the preheated mixture of indole and GAAS. Increasing the temperature to 80 °C or increasing the GAAS catalyst loading to 50 mol% accelerated the reaction, but the selectivity towards 1e was low due to the partial decomposition of HMF. The relatively low yield of 1h was due to the partial hydrolysis of the ester group. The reaction for 1h was also performed at a lower reaction temperature and decreased catalyst loading (i.e., 60 °C, 25 mol% GAAS) since higher temperature and higher loading of the GAAS catalyst led to increased hydrolysis of the ester group. A plausible mechanism for the synthesis of 1b from MF and indole has been proposed (Fig. 4). The carbonyl oxygen atom in furfural is first activated by the carboxylic acid functionality in GAAS. The sequential nucleophilic attack by two indole molecules from the C-3 position followed by rearomatization leads to 1b.
| Entry | Structure & code | Time (h) | Yield (%) | Antibacterial activity | ||
|---|---|---|---|---|---|---|
| Conc.c (%) | ZI (mean ± SD in mm) | |||||
| Ef | Ps | |||||
| a Reaction conditions: SFLs (5.21 mmol), indole (10.42 mmol, 2 equiv.), GAAS catalyst (50 mol% of SFL), 80 °C.b 60 °C, 25 mol% GAAS.c Concentrations (100% = 10 mg mL−1, 50% = 5 mg mL−1, 25% = 2.5 mg mL−1). The antibacterial activity of the standard Ciprofloxacin is 28.1 ± 0.57 mm for Ef and 26.3 ± 0.57 mm for Ps (at 100% conc.). | ||||||
| 1 | ![]() |
6 | 96 | 100 | 9 ± 0.57 | 0 |
| 50 | 6 ± 0.12 | 0 | ||||
| 25 | 3.5 ± 0.57 | 0 | ||||
| 2 | ![]() |
6 | 88 | 100 | 7 ± 0.57 | 9 ± 0.57 |
| 50 | 6 ± 0.21 | 6.5 ± 0.12 | ||||
| 25 | 2.5 ± 1 | 3.8 ± 0.57 | ||||
| 3 | ![]() |
1.5 | 90 | 100 | 7 ± 1 | 7 ± 0.57 |
| 50 | 5 ± 0.57 | 4 ± 0.57 | ||||
| 25 | 2.5 ± 0.23 | 2 ± 0.23 | ||||
| 4b | ![]() |
1.5 | 82 | 100 | 0 | 0 |
| 50 | 0 | 0 | ||||
| 25 | 0 | 0 | ||||
| 5b | ![]() |
3 | 68 | 100 | 12 ± 0.22 | 13 ± 0.23 |
| 50 | 8 ± 0.57 | 11 ± 0.57 | ||||
| 25 | 6 ± 0.32 | 8 ± 0.57 | ||||
| 6b | ![]() |
8 | 88 | 100 | 12 ± 0.57 | 10 ± 0.12 |
| 50 | 10 ± 0.21 | 8 ± 0.57 | ||||
| 25 | 8 ± 0.57 | 6 ± 0.32 | ||||
| 7 | ![]() |
5 | 85 | 100 | 13 ± 0.57 | 12 ± 0.57 |
| 50 | 10 ± 0.52 | 10 ± 0.22 | ||||
| 25 | 8 ± 0.12 | 8 ± 0.11 | ||||
| 8b | ![]() |
8 | 68 | 100 | 0 | 0 |
| 50 | 0 | 0 | ||||
| 25 | 0 | 0 | ||||
| 9 | ![]() |
12 | 78 | 100 | 14 ± 0.23 | 15 ± 0.57 |
| 50 | 10 ± 0.57 | 10 ± 0.15 | ||||
| 25 | 7 ± 0.17 | 8 ± 0.57 | ||||
The antibacterial activity of BIMs 1a–1i (from indole) and BIMs 1j–1r (from 2-methylindole) were assessed by the agar well diffusion method. The growth inhibitory effects of the compounds were evaluated against Gram-positive strains Staphylococcus aureus (Sa) and Enterococcus faecalis (Ef) and Gram-negative bacteria strain Pseudomonas syringae (Ps). The antibacterial effect was analyzed by considering the diameter of the inhibition zone formed around the well. The results of the antibacterial activity of BIMs 1a–1i are summarized in Table 2. No antibacterial activity was observed for compounds 1d and 1h. Weak antibacterial activity was observed for 1a–1c towards Ef and Ps. Fig. 5 shows the photographic images of the Petri plates after the incubation (37 °C, 24 h), containing bacterial strains (Ef & Ps) for studying the ZI of the synthesized BIMs 1a–1i at different concentrations against the standard antibiotic Ciprofloxacin.
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| Fig. 5 Photographic images of the Petri plates for studying antibacterial activities of BIMs 1j–1r against the bacterial strains Ef and Ps. | ||
The BIMs 1j–1r were produced in satisfactory isolated yields (76–95%) starting from SFLs and 2-methylindole. 2-Methylindole was found to be significantly more reactive than indole for synthesizing BIMs. The introduction of a methyl group increased the nucleophilicity of 2-methylindole compared to indole. The yield of 1n (entry 5, Table 3) from HMF and 2-methylindole was 76%, compared to only 68% for 1e (entry 5, Table 2) from HMF and indole. Moreover, the synthesis of 1n took only 1.5 h, whereas 1e took 3 h to complete. The result can be explained by the faster kinetics for 1n that minimized the scope for HMF degradation. The synthesis of other BIMs from 2-methylindole was significantly faster than those synthesized from indole.
| Entry | Structure & code | Time (min) | Yield (%) | Conc. (%) | Zone of inhibition (mean ± SD in mm) | |
|---|---|---|---|---|---|---|
| Sa | Ps | |||||
| a Reaction conditions: SFLs (5.21 mmol), 2-methylindole (10.42 mmol, 2 equiv.), GAAS catalyst (25 mol% of SFL). The antibacterial activity of the standard Ciprofloxacin was 28.1 ± 0.57 mm for Sa and 26.3 ± 0.57 mm for Ps (at 100% conc.). | ||||||
| 1 | ![]() |
20 | 95 | 100 | 18 ± 0.57 | 14 ± 0.57 |
| 50 | 16 ± 0.1 | 13 ± 0.22 | ||||
| 25 | 14 ± 0.57 | 12 ± 0.57 | ||||
| 2 | ![]() |
20 | 94 | 100 | 15 ± 1 | 14 ± 0.57 |
| 50 | 14 ± 0.57 | 12 ± 0.32 | ||||
| 25 | 12 ± 0.52 | 8 ± 0.57 | ||||
| 3 | ![]() |
45 | 90 | 100 | 16 ± 0.57 | 0 |
| 50 | 14 ± 1 | 0 | ||||
| 25 | 13 ± 0.23 | 0 | ||||
| 4 | ![]() |
90 | 78 | 100 | 0 | 6 ± 0.23 |
| 50 | 0 | 4 ± 0.32 | ||||
| 25 | 0 | 2 ± 1 | ||||
| 5 | ![]() |
90 | 76 | 100 | 15 ± 0.57 | 12 ± 0.23 |
| 50 | 10 ± 1 | 10 ± 0.32 | ||||
| 25 | 6 ± 0.23 | 6 ± 1 | ||||
| 6 | ![]() |
90 | 90 | 100 | 0 | 6 ± 0.57 |
| 50 | 0 | 4 ± 0.3 | ||||
| 25 | 0 | 2 ± 0.23 | ||||
| 7 | ![]() |
90 | 84 | 100 | 19 ± 1 | 10 ± 0.57 |
| 50 | 17 ± 0.3 | 6 ± 0.23 | ||||
| 25 | 16 ± 0.23 | 4 ± 0.57 | ||||
| 8 | ![]() |
90 | 86 | 100 | 18 ± 0.57 | 12 ± 0.57 |
| 50 | 15 ± 0.57 | 10 ± 0.32 | ||||
| 25 | 11 ± 0.23 | 7 ± 0.57 | ||||
| 9 | ![]() |
90 | 80 | 100 | 12 ± 0.57 | 0 |
| 50 | 10 ± 1 | 0 | ||||
| 25 | 8 ± 0.57 | 0 | ||||
The BIMs synthesized from 2-methylindole (i.e., 1j–1r) showed good antibacterial activity compared to those obtained from indole (i.e., 1a–1i). BIMs 1j–1r showed more aggression towards Gram-positive bacterial strain Sa rather than Ps. The antibacterial resistance of Gram-negative bacteria compared to Gram-positive bacteria could be attributed to the different cell wall structure of the two types. Gram-negative bacteria have an effective permeability barrier composed of a thin peptidoglycan and an outer membrane, which limits the penetration of the test compound. On the other hand, the cell wall of Gram-positive bacteria Sa is made up of only a single thick layer of peptidoglycan, making it more susceptible to antibacterial compounds like BIMs.
The novel and biorenewable BIMs, such as 1g, 1q, 1j, and 1l, showed significant antibacterial effects towards Gram-positive bacterial strain Sa with the ZI value of 19 ± 1 mm, 18 ± 0.57 mm, 18 ± 0.57 mm, and 16 ± 0.57 mm, respectively, at the concentration of 10 mg mL−1. The BIMs synthesized from indole, such as 1h, 1e, and 1g, showed moderate antibacterial effect against Gram-negative bacteria Ps with the ZI value of 15 ± 0.57 mm, 13 ± 0.23 mm, and 12 ± 0.57 mm, respectively. The ZI values of the same compounds for the Gram-positive Sa resulted in ZI values of 14 ± 0.23 mm, 12 ± 0.22 mm, and 13 ± 0.57 mm, respectively, at the concentration of 10 mg mL−1. All other BIMs showed low to moderate antibacterial activity towards the selected bacterial strains. Ciprofloxacin, the standard antibiotic chosen for this study, showed ZI values of 28.1 ± 0.57 mm and 26.3 ± 0.57 mm against Sa and Ps, respectively. Gram-negative bacteria are typically more resistant to antibiotic compounds than Gram-positive bacteria.37 Colony inhibition in the bacterial strains might be brought about by the suppression of DNA or protein synthesizers that damage the integrity of cell membranes leading to cell death.38 The inhibitory effect of BIMs against pathogenic bacterial strains could be associated with active functional groups (i.e., indole, substituents on the furan ring) present in the compounds.
Fig. 6 shows the photographs of the Petri plates after the incubation (37 °C, 24 h), containing bacterial strains Sa and Ps, for studying the ZI of the synthesized BIMs 1j–1r at different concentrations against the standard antibiotic Ciprofloxacin.
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| Fig. 6 Photographs of the Petri plates for studying antibacterial activities of BIMs 1j–1r against the bacterial strains Sa and Ps. | ||
Interestingly, BIMs 1a–1i, synthesized from indole and SFLs, show comparable or slightly better antibacterial activity towards Gram-negative Ps compared to Gram-positive strain Ef (Fig. 7a). However, in the case of 1a, no activity was observed on Ef. The compound 1i, produced by reacting 5-(mesitylmethyl)furfural with indole, showed promising antibiotic properties on both Ef and Ps. The ZI was around 50% of the standard antibiotic Ciprofloxacin used in this study. In the case of BIMs 1j–1r, produced by reacting SFLs with 2-methylindole, showed significantly better antibacterial activity on Gram-positive bacteria Sa compared to Ps (Fig. 7b). The compounds 1j and 1p showed the best antibacterial activity on Sa with ZI of 19 ± 1 mm and 18 ± 0.57 mm, respectively, compared to 28 ± 0.57 mm for Ciprofloxacin.
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| Fig. 7 Comparison of antibacterial activities on Gram-positive and Gram-negative bacterial strains by BIMs synthesized from (A) indole and (B) 2-methylindole. | ||
Footnote |
| † Electronic supplementary information (ESI) available: FTIR, NMR (1H & 13C), and elemental analysis data of the synthesized compounds. See DOI: https://doi.org/10.1039/d4ra03905j |
| This journal is © The Royal Society of Chemistry 2024 |