Open Access Article
Diptajyoti
Gogoi
a,
Kalyan J.
Kalita
b,
Nishant
Biswakarma
c,
Mihails
Arhangelskis
d,
Ramesh Ch
Deka
*c and
Ranjit
Thakuria
*a
aDepartment of Chemistry, Gauhati University, Guwahati 781014, India. E-mail: ranjit.thakuria@gauhati.ac.in; ranjit.thakuria@gmail.com
bDepartment of Chemical Sciences, Indian Institute of Science Education and Research Kolkata, 741246, West Bengal, India
cDepartment of Chemical Sciences, Tezpur University, Tezpur, Assam, India. E-mail: ramesh@tezu.ernet.in
dFaculty of Chemistry, University of Warsaw, 1 Pasteura Street, 02-093 Warsaw, Poland
First published on 9th July 2024
We demonstrate here the mechanochemical cocrystallization of trans-aconitic acid (TACA) with nicotinamide (NA) that leads to the formation of multi-component crystal forms with stoichiometric diversity, polymorphism with high Z′′ and the simultaneous existence of salt and cocrystal. During cocrystallization, we obtained a 1
:
1 molecular salt hydrate of TACA with NA and two polymorphic cocrystal hydrates of the same in 1
:
2 ratios, with a Z′′ value of seven, respectively. Manual grinding shows that 1
:
1 molecular salt and 1
:
2 cocrystal polymorphs are interconvertible under appropriate conditions. Moreover, cocrystal dissociation was observed upon heating the 1
:
2 cocrystal and in the presence of excess TACA during the preparation of the form I cocrystal using LAG. Thermal analysis, powder XRD, and DFT calculations establish the relative stability of the multi-component solids. Three-component polymorphic systems with high Z′′ are quite unusual; however, based on mechanochemistry, we have successfully synthesized and characterized them.
Here in this manuscript, we have chosen a novel system consisting of trans-aconitic acid (TACA), a fundamental metabolite, and nicotinamide (NA), also known as vitamin B3, which resulted in the formation of multi-component solids (salt as well as cocrystal) with stoichiometric diversity along with a pair of polymorphic cocrystal hydrates during mechanochemical synthesis (Scheme 1). In the literature, only one cocrystal of TACA with pyrazinamide is reported37 along with the crystal structure of polymorphic anhydrous cis-aconitic acid38,39 and its cocrystal with carbamazepine.40 We used manual grinding in order to prepare all possible multi-component solids and to study their interconversion via a “one pot polymorph and variable stoichiometry turnover experiment”. Moreover, we have investigated salt and cocrystal formation during variable stoichiometry co-crystallization experiments and compared the relative energies of the molecular salt hydrate and polymorphic cocrystal hydrate, based on density-functional theory (DFT) calculations.
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| Scheme 1 Molecular structures of the two compounds: (a) trans-aconitic acid (TACA) and (b) nicotinamide (NA) used for co-crystallization. | ||
:
1 and 1
:
2 stoichiometric ratios and ground using a mortar and pestle in the presence of various added liquids for about 30 min, resulting in the formation of the respective salt and cocrystal. The resultant powder materials were examined using powder X-ray diffraction (PXRD).
:
1 and 1
:
2 stoichiometric ratios were placed in a mortar and ground in the presence of 100 μL acetonitrile (ACN) as added liquid. PXRD of the resultant powders shows well distinct powder patterns different from those of their respective starting materials, viz., TACA and NA (Fig. 1). In order to characterize the materials, LAG samples were dissolved in 1
:
1 mixture solvent of THF and methanol, and allowed to evaporate slowly. After a period of one week, nice block shaped single crystals were obtained and used for single crystal X-ray diffraction analysis.
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Fig. 1 Comparison of the powder patterns of 1 : 1 and 1 : 2 TACA–NA LAG samples showing well distinct powder patterns different from those of their respective starting materials. | ||
Crystal structure analysis showed that the 1
:
1 mixture of TACA–NA results in a (TACA)−·(NA)+·(H2O) 1
:
1 molecular salt of TACA and NA along with a water molecule in the asymmetric unit (Fig. 2a). Due to the formation of the molecular salt, SCXRD data were collected even at 100 K along with room temperature (298 K) in order to confirm the proton transfer from TACA to NA and the formation of the molecular salt. Also, the structural description is based on 100 K data in order to minimize the thermal vibration of atoms present in the salt structure. The crystal structure was solved in the monoclinic non-centrosymmetric Cc space group. One of the carboxylic acid protons of TACA was transferred to the N atom of the neighboring NA ring, resulting in the formation of a molecular salt. The relatively shorter C12–O6 bond (1.2893(1) Å) compared to C7–O2 (1.3295(1) Å) and C10–O4 (1.3149(1) Å) bonds of the other two carboxylic acid groups confirms the resonance stabilization of the carboxylate group and possible proton transfer from the TACA unit to the neighboring NA molecule. Moreover, the N2–H2B distance is 1.08(3) Å and the H2B⋯O6 distance is 1.47(4) Å (unnormalized distance), clearly depicting the transfer of the carboxylic acid proton from TACA to the NA molecule, resulting in the formation of a molecular salt. Looking into the CSD with an acid–pyridine hydrogen bond synthon, molecular salts with CSD ref code. MOVTEX (D = 2.533 Å), MOYSEZ (D = 2.57 Å), MUSQAV (D = 2.56 Å), OFESIB (D = 2.544), etc., having a donor–acceptor distance (D) close to the TACA–NA 1
:
1 crystal structure having a D value of 2.551 Å (O6–N2) suggests possible proton transfer. Surprisingly, the resultant molecular salt does not contain the most abundant acid–amide ring synthon. Rather, it contains an acid–pyridine discrete N+–H⋯O− ionic synthon along with N–H⋯O and O–H⋯O hydrogen bonds between the remaining carboxylic acid groups of TACA and the amide group of the NA molecule. Non-planar TACA results in a helical hydrogen bonded network connecting the adjacent water and NA molecules (Fig. 2b). The water molecule actively takes part in connecting the helical TACA molecules using O–H⋯O hydrogen bonds (Fig. 2c). The conformation of one of the carboxylic acids of TACA is unusual; it exists in the trans form connecting the amide–carbonyl group of the NA molecule via an O–H⋯O hydrogen bond.
Crystallizing LAG samples of a 1
:
2 stoichiometric mixture of TACA–NA from tetrahydrofuran (THF) results in a needle shaped single crystal of the (TACA)2·(NA)4·(H2O) cocrystal with two molecules of TACA, four molecules of NA and one molecule of water in the asymmetric unit (Fig. 3a). The crystal structure was solved in the triclinic P
space group. The (TACA)2·(NA)4·(H2O) molecular structure does not show any proton transfer from the acidic counterpart of TACA to NA and hence can be considered as a cocrystal hydrate. The conformations of all the carboxylic acid groups of TACA are cis (no trans form exists like in its 1
:
1 salt hydrate) and the two symmetry independent TACA molecules show different supramolecular synthons connected to adjacent NA molecules. The three carboxylic acid functionals of one TACA connect three neighboring NA molecules using acid–pyridine supramolecular synthons (O–H⋯N hydrogen bond). Two carboxylic acid groups of the second symmetry independent TACA unit form an acid–amide dimer synthon with their NA neighbors and the third carboxylic acid group connects two adjacent NAs using an acid–pyridine (O–H⋯N) and a discreet acid–amide N–H⋯O single point supramolecular synthon. The water molecule resides in the void created by the helical channel formed using a symmetry independent tetrameric TACA–NA unit via an O–H⋯O hydrogen bond, as shown in Fig. 3b. One of the symmetry independent NA molecules also contains a centrosymmetric amide dimer synthon that further connects neighboring TACA using an acid–pyridine O–H⋯N hydrogen bond synthon (Fig. 3b and c).
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| Fig. 3 (a) Molecules present in the asymmetric unit. (b) Various supramolecular synthons present in the (TACA)2·(NA)4·(H2O) form I cocrystal hydrate. (c) Amide-dimer synthon characteristic of form I. | ||
The comparison of the calculated powder patterns of 1
:
1 and 1
:
2 with the LAG material (ACN as liquid) confirms the 1
:
2 (TACA)2·(NA)4·(H2O) cocrystal hydrate (designated as form I hereafter) to be phase pure, whereas the 1
:
1 (TACA)·(NA)·(H2O) salt hydrate also contains traces of form I (see ESI Fig. S1†). Exploring neat grinding (NG) and LAG with various liquids, it was observed that the presence of water, isopropanol, THF, toluene and methanol results in the formation of a phase pure 1
:
1 molecular salt hydrate; on the other hand, LAG with hexane, ACN and EtOH always results in the concomitant formation of a 1
:
1 salt along with a 1
:
2 cocrystal (2θ peak at 13.3° characteristic of form I), confirmed using PXRD analysis (Fig. 4).
The influence of various added liquids during grinding shows the appearance of new PXRD patterns for 1
:
2 TACA–NA with ethanol, water and isopropanol (see ESI Fig. S2†). In order to characterize the material, solution crystallization was carried out for the ground powder in a mixture solvent of THF and methanol. Lath shaped single crystals obtained during slow evaporation confirm the material to be a polymorphic form of the (TACA)2·(NA)4·(H2O) cocrystal hydrate (hereafter designated as form II). PXRD analysis shows that LAG with hexane and ACN results in form I; LAG with water, ethanol and isopropanol yields form II, whereas LAG with all other liquids considered for the study results in the formation of concomitant polymorphic mixtures, as shown in ESI Fig. S2.†
Structural analysis showed that form II also contains two molecules of TACA, four molecules of NA and one water molecule in the asymmetric unit similar to form I and solved in the triclinic P
space group (Fig. 5a). Surprisingly, the two polymorphs have nearly identical crystal packing and hydrogen bond interactions. The form II structure also contains a symmetry independent TACA molecule connecting three neighboring NA molecules using an acid–pyridine O–H⋯N hydrogen bond synthon. The second TACA unit contains two acid–amide synthons connecting two NA molecules and one acid–pyridine synthon, as shown in Fig. 5b. The only difference between the two structures is that in form II one of the NA molecules forms an amide catemer connecting adjacent NA molecules (Fig. 5c), whereas in form I, it instead forms a centrosymmetric amide dimer (Fig. 3c). The crystal packing similarity of form I and form II calculated using the licensed version of Mercury software showed a similarity of 5 out of 15 clusters with a PXRD similarity value of 0.297 and a rotation matrix value of 0.968. The crystal packing overlay of the two polymorphs is shown in Fig. 5d. FT-IR analysis also showed a clear difference between the stretching frequencies of the 1
:
1 (TACA)·(NA)·(H2O) salt hydrate and 1
:
2 polymorphic (TACA)2·(NA)4·(H2O) cocrystal hydrate (see ESI Fig. S3†). Although the number of structures with high Z′ (the number of symmetry independent molecules in the asymmetric unit for a single component system) and Z′′ (the number of symmetry independent molecules in the asymmetric unit for a multi-component system) has increased in recent years,53,54 polymorphic systems with high Z′′ are uncommon and only a few are reported in the literature.55–61 The analysis of the Cambridge Crystallographic Database62 (CSD; Conquest 2022.3.0 v. July 2023) shows the existence of only five dimorphic co-crystal hydrates to date, with the highest Z′′ value of nine (see Table S1 in the ESI†).63–67 Among the reported structures, most of them have different crystal packing arrangements and hydrogen bond interactions. Blagden et al. reported68 three polymorphic cocrystals (Z′′ values of 3, 3, and 6) and a concomitant salt structure (Z′′ value of 3) for a closely related molecule citric acid with isonicotinamide, whereas a 1
:
2 cocrystal for citric acid with nicotinamide was observed during cocrystallization reported by Lemmerer and Bernstein.69 In our case, the only major difference between the two polymorphs is the presence of amide dimeric (form I) and catemeric (form II) synthons between the nicotinamide molecules. We have also carried out a CSD search on the relative abundance of amide dimeric vs. catemeric synthons present in the reported literature. It shows that structures with only amide catemeric synthons are ∼36% compared to molecules with only dimeric synthons (∼43%). Approximately 21% of crystal structures contain both of them in their packing arrangement. The crystallographic information details and hydrogen bond parameters of the TACA–NA–H2O multi-component solids are included in ESI, Tables S2 and S3.†
We also explored the effect of η (the volume of the liquid in μL divided by the sample weight in mg) during grinding on polymorphic phase transformation. PXRD analysis showed that LAG with ACN results in the formation of form I having an η value in the range 0.179–1.196 (15–100 μL), whereas an increase in the η value beyond 1.196 results in the formation of concomitant polymorphic mixtures (forms I and II), confirmed using PXRD analysis (see ESI Fig. S4†).
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| Scheme 2 Representation of the interconvertible nature of form I and form II of (TACA)2·(NA)4·(H2O) along with the dissociated cocrystal upon heating. | ||
We have also checked whether the (TACA)−·(NA)+·(H2O) molecular salt hydrate can be inter-convertible to the (TACA)2·(NA)4·(H2O) cocrystal hydrate and vice versa or not. At first, a LAG sample of the (TACA)−·(NA)+·(H2O) salt hydrate in the presence of water is prepared and the PXRD pattern is recorded to confirm its phase purity. Then to the resultant 1
:
1 mixture, 1 mol equivalent of NA was added and the powder sample was ground in the presence of different added liquids and their PXRD patterns were recorded. PXRD analysis confirms the resultant powder material to be (TACA)2·(NA)4·(H2O) form II irrespective of the added liquid during grinding. When 1 mol equivalent of TACA was added to form II and LAG was performed in the presence of water as added liquid, PXRD analysis confirmed the transformation of form II to a 1
:
1 molecular salt hydrate, i.e., the interconversion of a 1
:
1 molecular salt hydrate and 1
:
2 cocrystal hydrate is possible by means of grinding. Moreover, the form II material obtained from the addition of 1 mol equivalent of NA to the 1
:
1 salt hydrate material was placed in an oven at 80 °C for ∼80 minutes, and form II further converted partially to form I along with a few additional peaks corresponding to possible dissociation of the 1
:
2 (TACA)2·(NA)4·(H2O) cocrystal. The transformed material (form I + dissociated cocrystal) can be further converted to a 1
:
1 molecular salt hydrate upon addition of 1 mol equivalent of TACA and subjecting to LAG in the presence of water (see ESI Fig. S9†). The turnover experiment of interconversion of a 1
:
1 molecular salt hydrate and 1
:
2 cocrystal hydrate can be repeated as many times as desired and is reproducible too.
:
2 cocrystal hydrates under 75% RH. The powder samples of the respective 1
:
2 cocrystals were placed in bell jars containing saturated NaCl aqueous solution that maintains a relative humidity of 75% and their PXRD patterns were recorded after a regular interval of time. PXRD analysis showed the form II cocrystal to be stable, whereas form I, after a period of 1 week under 75% RH, was found to transform to form II along with the formation of a small amount of 1
:
1 molecular salt and pure TACA (see ESI, Fig. S10†). Finally, after a period of 3 months, ∼70% of form I transformed to form II, along with 1
:
1 molecular salt and starting material, TACA, based on Rietveld refinement (see ESI Fig. S11†).
The overall turnover experiment of 1
:
1 molecular salt and 1
:
2 polymorphic cocrystal hydrates is illustrated in Scheme 3.
During the turnover experiment, we also observed that there is a significant morphological change of the particles of the respective 1
:
1 salt and polymorphic 1
:
2 cocrystal hydrates. The 1
:
1 salt hydrate shows the formation of irregular shaped particles with a size range of 2–3 μm. On the other hand, the 1
:
2 form I cocrystal hydrate shows the formation of aggregates with significantly larger particles during fresh preparation as well as interconversion. The 1
:
2 form II cocrystal hydrate shows the formation of well-defined long acicular particles during fresh preparation using LAG as well as interconversion from form I and/or the 1
:
1 molecular salt hydrate as evident from their FE-SEM images (Fig. 6 and ESI Fig. S12†).
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Fig. 6 SEM images of TACA–NA–H2O: (a) 1 : 1 hydrated molecular salt and (b) 1 : 2 hydrated cocrystal form I and form II. | ||
:
1 TACA–NA hydrated molecular salt undergoes a loss of solvent water along with melting of the molecular salt, followed by the dissociation of the material. The DSC thermogram shows melting (onset) coupled with solvent water loss at 87 °C (Fig. 7). Thermogravimetric analysis (TGA) showed a weight loss of 5.5% corresponding to the loss of 1 mol equivalent of water, which matches well with the theoretical value.
The DSC thermogram of the 1
:
2 TACA–NA–H2O form I cocrystal shows the loss of solvent water at 78 °C (onset) (Fig. 8a). If the cocrystal is exposed to 80 °C for a longer period, it shows two endothermic peaks. The first endothermic event at 107 °C may be a possible polymorphic phase transformation of the 1
:
2 guest-free form, followed by melting of the guest-free form at 116.19 °C. The weight loss of 2.1% observed in the TG curve (Fig. 8b) corresponds to 1 mol equivalent of water, which nicely coincides with the X-ray crystal structure (theoretical value: 2.1%). The form II cocrystal shows the loss of solvent water at 100.71 °C. The broader endothermic peak may be due to the overlap of the observed phase transformation event from form II to form I, further confirmed using PXRD analysis, followed by the loss of solvent water. It shows a single melting endotherm with the melting onset at 118 °C (Fig. 8a), which coincides with the second melting endotherm observed for the anhydrous 1
:
2 cocrystal. The weight loss of 2.08% observed in the TG curve (Fig. 8c) corresponds to 1 mol equivalent of water, which coincides with the theoretical value of 2.1% based on X-ray crystal structure analysis. In order to confirm the cocrystal dissociation, the form I material was also further heated at 90 °C for a period of ∼15 min and the PXRD pattern of the powder sample was recorded. The powder pattern exactly matches with the PXRD pattern of the heated form II material used for the turnover experiment (see ESI Fig. S13†). Moreover, the addition of a trace amount of TACA to the form I material during grinding shows exactly the same PXRD pattern obtained after heating form I as well as form II, which further supports our assumption of possible cocrystal dissociation.
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Fig. 8 (a) DSC and (b and c) TG thermograms of 1 : 2 TACA–NA–H2O hydrated cocrystal form I and form II, respectively. | ||
:
1 case and polymorphic cocrystals in the 1
:
2 case. Chemists and crystal engineers typically use the pKa rule to cautiously predict the formation of molecular salts and cocrystals. Empirical data have revealed that for multi-component crystals comprising acid and basic constituents, ΔpKa > 4 nearly invariably leads to salts, ΔpKa < −1 almost always leads to cocrystals, and ΔpKa between −1 and 4 can lead to either.70–72
We have used density functional theory (wb97xd/6-311++g(d,p)) to estimate the pKa values. The combination of the wb97xd/6-311++g(d,p) method is used to optimize the molecules in the gaseous phase, while the SMD universal solvation model is used to optimize the solvated counterparts as implemented in the Gaussian 16 program package (see the ESI† for more details and optimized coordinates of individual conformers). This level of theory has been previously benchmarked as the best DFT functional for reliable pKa calculations.73,74 We have observed that ΔpKa for the 1
:
1 case is 3.4 and 0.1 was obtained in the case of the 1
:
2 cocrystal system that resides in the grey region. Therefore, the formation of a molecular salt in the 1
:
1 case and cocrystal in 1
:
2 stoichiometric ratios of TACA and NA during manual grinding should be best explained using experimental SCXRD analysis.
In a quest to show the relative stability of form I and form II, lattice energy calculations are performed at the B3LYP-GD3/Def2TZVP level of theory. The gas phase DFT calculated lattice energy values are found to be very close (Table 1). Non-covalent interactions play a vital role in the crystal packing of organic crystals and, thereby, the stability of organic electronic materials. Hirshfeld surface analysis provides a better comparison of the intermolecular interactions present within a crystal structure. The 2D fingerprint plots of the two polymorphic systems show nearly identical non-covalent interactions. The two spikes corresponding to N⋯H and O⋯H contributions are identical in nature; the major difference is due to the van der Waals interactions corresponding to the H⋯H contribution that is shown using the arrow in red (Fig. 9a). Along with the quantitative analysis based on Hirshfeld surface analysis (see ESI Fig. S14†), non-covalent interactions in form I and form II are qualitatively visualized in Fig. 9b.
| Form | a (Å) | b (Å) | c (Å) | α (°) | β (°) | γ (°) | E pack (kcal mol−1) | E SP (kcal mol−1) | E lattice (kcal mol−1) |
|---|---|---|---|---|---|---|---|---|---|
| I | 5.0306 | 14.9770 | 26.8120 | 84.727 | 87.615 | 87.464 | −240.328697 | −62.94923915 | −303.28 |
| II | 5.0668 | 17.9930 | 22.1390 | 92.134 | 93.962 | 94.232 | −240.876561 | −58.409546 | −299.29 |
:
1 stoichiometric ratio forms a molecular salt hydrate, whereas a 1
:
2 stoichiometric ratio of TACA and NA yields a rare dimorphic system of cocrystal hydrates with seven independent molecules in the asymmetric unit. All the multi-component solids are interconvertible and characterized using various solid-state techniques. All the multi-component solids show distinct morphologies based on their SEM micrographs. The turnover experiment showed that the form I cocrystal was prone to dissociation upon heating and in the presence of excess starting material (TACA) as an impurity during grinding. Density functional theory ΔpKa calculations show the values in the grey region. Therefore, SCXRD plays an important role in establishing the formation of a molecular salt in the case of a 1
:
1 TACA–NA mixture and cocrystal formation during milling of a TACA and NA mixture in a 1
:
2 stoichiometric ratio. Also, lattice energy calculations showed that the two polymorphic systems are within a close energy window with form I being thermodynamically stable in the gas phase. However, it is difficult to summarize their relative stability as during LAG experiments, most of the liquids resulted in the formation of concomitant mixtures of forms I and II; the crystal densities of the two polymorphs are also nearly equal. Although thermal measurements showed the transformation of form II to form I at high temperatures, high humidity resulted in their interconversion. We hope that such in-depth analysis based on mechanochemistry will improve our understanding of the structural landscape of multi-component solids prior to pharmaceutical cocrystal/salt design and avoid unwanted polymorphs or multi-component solids as impurities during batch formulation.
Footnote |
| † Electronic supplementary information (ESI) available: Extensive experimental section as well as PXRD patterns, crystallographic data table and optimized coordinates of individual conformers. CCDC 2291739–2291741 and 2355242. For ESI and crystallographic data in CIF or other electronic format see DOI: https://doi.org/10.1039/d3mr00022b |
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