Naoki
Ogawa
a,
Nobuhiro
Suzuki
a,
Yoshifumi
Katsura
a,
Mao
Minoura
b,
Waro
Nakanishi
a and
Satoko
Hayashi
*a
aFaculty of Systems Engineering, Wakayama University, 930 Sakaedani, Wakayama 640-8510, Japan. E-mail: hayashi3@sys.wakayama-u.ac.jp
bDepartment of Chemistry, College of Science, Rikkyo University, Toshima-ku, Tokyo 171-8501, Japan
First published on 28th May 2024
Highly stable selanyl halides, 1-ATQSeX (X = I (1), Br (2) and Cl (3)), were prepared. The structures of 1, 2, 6 (1-ATQSeX: X = Me) and 7 (1-ATQBr) were determined. QC calculations were performed on 1–3, 4 (X = F), 5 (X = H), 6, 7 and 8 (X = SeATQ-1). The O⋯Se distances in 1–4 from the sum of the vdW radii of the atoms (Δr(Se, O1)) were less than −1 Å, in magnitude, which must be the driving force for the high stability. The O-*-Se interactions seem stronger in the order of 1 < 2 < 3 < 4. The intrinsic dynamic and static natures of O⋯Se and/or Se⋯X in 1–8 are elucidated by QTAIM dual functional analysis (QTAIM-DFA). The Se-*-I, Se-*-Br, Se-*-Cl and Se-*-F interactions in 1–4 are predicted to have the natures of covalent, TBP with CT, TBP with CT, and typical HB with covalency, respectively, whereas O-*-Ses in 1–4 are all predicted to have the nature of MC with CT. The Se-*-H, Se-*-CMe and Se-*-Se interactions in 5, 6 and 8 are all predicted to have the covalent nature, while O-*-Ses in 5, 6 and 8 are all predicted to have the nature of typical HB with no covalency. The E(2) values of 1–6 and 8 are calculated with NBO analysis, and correlate excellently with Δr(Se, O1), except for Se-*-F, for which E(2) is evaluated to be much larger. The E(2) values also correlate very well with Cii−1 for all Se-*-X in 1–4, although data from 5, 6 and 8 deviated from the correlation, where Cii is the diagonal element of the compliance (force) constant for the internal vibrations. The behaviour of the interactions is further examined based on the QTAIM-DFA parameters of θ and θp. The stabilizing effect is further confirmed by the calculations with the ν(CO) values analyzed carefully.
![]() | (1) |
It is vitally important to clarify the factors controlling the fine details of structures, to understand the stability of selanyl halides, where the factors will create high functionalities of materials. Hypervalent n(G)⋯σ*(Y–X) 3c-4e (three centre-four electron) interactions of the σ type (GYX σ(3c-4e)) should be a typical example of such factors. GYX σ(3c-4e) operates to align the three GYX atoms linearly.1 Such interactions have been skilfully utilized as tools for materials development,1,12 such as supramolecular chemistry and donor–acceptor complexes for electronic materials. The interactions also operate typically in biological activity, regulation of enzymatic functions, and stabilization of folded protein structures. They often appear in the unsymmetric form.1,7,12Fig. 1 illustrates the typical cases of GYX σ(3c-4e) (Y = Se), with the approximate MO model for σ(3c-4e). The bonding scheme of σ(3c-4e) is mainly explained based on ψ2, where the central atom is highly positively charged while the outside two are highly negatively charged. Namely, σ(3c-4e) will form and is stabilized by the highly electropositive atoms at the central position with the highly electronegative ones at the outside positions.
Much effort has been made to stabilize and isolate ArSe-I, together with ArSe-Br and ArSe-Cl, through the coordination by G at the back side of Se in σ*(Se–X). The coordination usually yields the T-shaped GSeX σ(3c-4e),1,7,12 which is often highly unsymmetric. Tomoda and co-workers stabilized and isolated the ArSe-X (X = Cl and Br) species through coordination by X− (I) and the carbonyl oxygen (II).2–5 The Se–X bonds are also stabilized with G = RR'N, RO and halogens bonded to the benzyl carbon. Singh and co-workers investigated the unsymmetric N⋯Se–X interactions in 2-[2′-(4′,4′-dimethyl)oxazolinyl]phenylselanyl halides (III).12,13 The N⋯Se distances are shorter than the sum of the van der Waals radii14 of N and Se by 0.32 Å for X = Cl and Br and 0.28 Å for X = I.13 (see Fig. 1 for the structures of I–III). On the other hand, the Se–I bond is stabilised not by the donating group but by the cavity-shaped steric protection group (Bpq).15 The Se–I bond distance in BpqSe-I is 2.5203(11) Å. This will be discussed again later.
We encountered the formation of 1-(iodoselanyl)anthraquinone (1-ATQSeI: 1) as only one product, in the reaction of 1-(benzylselanyl)anthraquinone (1-ATQSeBzl) with I2 in CHCl3. Eqn (2) explains the reaction. The selanyl iodide 1 was extremely stable; it is stable for over one year in air, for example. Chart 1 shows the structures of 1-ATQSeX (X = I (1), Br (2), Cl (3), F (4), H (5) and Me (6)), together with 1-bromoanthraquinone (7) and anthraquinone-1,1′-diselenide (X = SeATQ-1 (8)), although there is no sign for the formation of 8 in the reaction of eqn (2).
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Why is the Se–I bond in 1 so stable toward air and moisture? Are the Se–X bonds in 2–4 similarly stable? What are the factors that stabilise the Se–X bonds in 1–4? The selanyl halides, 2 and 3, were prepared under similar conditions with good to excellent yields, whereas preparation of 4 was not tried (cf: eqn (2)). The nature of OSeX σ(3c-4e) in 1–4 is elucidated to understand the stability, together with that in 5 and 6, and OSeSeO σ(4c-6e) in 8. The OSeX σ(3c-4e) interactions must operate to stabilise the Se–X bonds in 1–4. The behaviour of the interactions and the structural features in 1–6 are clarified based on the experimentally determined structures and/or the theoretical investigations, together with the OSeSeO σ(4c-6e) in 8, referring to the O⋯Br interaction in 7.
How can the natures of the interactions in question be elucidated? The quantum theory of atoms-in-molecules dual functional analysis (QTAIM-DFA)16–19 was applied to the interactions for this purpose. In the QTAIM approach, Hb(rc) is plotted versus Hb(rc) − Vb(rc)/2 at the bond critical points (BCPs) on the interactions in question, where Hb(rc) and Vb(rc) are the total electron energy densities and the potential energy densities at the BCPs, respectively. (ρb(rc) and Gb(rc) stand for the electron densities and the kinetic energy densities at the BCPs, respectively.) Data from the fully optimized structures and the perturbed structures around fully optimized ones are plotted in QTAIM-DFA in our treatment, which is called QTAIM-DFA plots.17,19 The perturbed structures are generated, employing the coordinates Ci derived from the diagonal element of the compliance (force) constants Cii for the internal vibrations.20–22 The method is called CIV and is highly reliable.23,24
Each plot for an interaction is analysed by the polar coordinate (R, θ) parameters with the (θp, κp) parameters. The R and θ parameters are calculated for the data point of the interaction in the fully optimized structure at the origin. While R corresponds to the energy for the interaction in question in the plot, θ, measured from the y axis, classifies the interaction. The (θp, κp) parameters are measured based on the plot at the data point for the interaction in the fully optimized structure. θp is measured from the y-direction, which corresponds to the tangent line of the plot, and κp is the curvature.17,19,24 While θp characterizes the interaction, κp does not play an important role in the analysis of an interaction, although it contains deep meaning. The (R, θ) parameters are calculated based on the data of the fully optimized structures; therefore, they correspond to the static nature of interactions. The dynamic nature of interactions is proposed based on (θp, κp), which are derived from the data of the perturbed structures around fully optimized ones. The dynamic nature is described as the intrinsic dynamic nature, if the perturbed structures with CIV are employed. QTAIM-DFA is applied to standard interactions, and rough criteria that distinguish the interaction in question from others are obtained.17,19,24 The criteria and QTAIM-DFA are explained in Schemes SA1–SA3, Fig. SA1 and SA2, Table SA1 and eqn (SA1)–(SA7) of the Appendix in the ESI,† together with the basic concept of the QTAIM approach.
The structures were determined for 1, 2, 6 and 7 by X-ray crystallographic analysis. The intrinsic dynamic and static natures of OSeX σ(3c-4e) were elucidated for 1–6 and OSeSeO σ(4c-6e) for 8, together with OBr σ(2c-4e) for 7. QTAIM-DFA was applied for the analysis, employing the perturbed structures generated with CIV. NBO analyses with the NBO6 program25 were also employed to evaluate the CT terms of the OSeX σ(3c-4e) and OSeSeO σ(4c-6e) interactions. Herein, we present the results of the investigations, which supply useful insights into the natures of the interactions and the reason for the stability of the species. The relations between the E(2) values obtained by NBO and the O⋯Se distances and the Cii values are also discussed.
The method to generate the perturbed structures with CIV is explained in eqn (3). The i-th perturbed structure in question (Siw) is generated by the addition of the i-th coordinates derived from Cii (Ci) to the standard orientation of a fully optimized structure (So), in the matrix representation. The coefficient giw in eqn (3) controls the structural difference between Siw and So: giw is determined to satisfy eqn (4) for r, where r and ro stand for the interaction distances in question in the perturbed and fully optimized structures, respectively, with ao = 0.52918 Å (Bohr radius). The Ci values of five digits are used to predict Siw.
Siw = So + giw·Ci | (3) |
r = ro + wao (w = (0), ±0.025 and ±0.05; ao = 0.52918 Å) | (4) |
y = co + c1x + c2x2 + c3x3 | (5) |
The values of QTAIM functions were calculated using the same basis set system as in the optimizations, unless otherwise noted. They were analysed with the AIM200033 and AIMAll34 program. In QTAIM-DFA plot of Hb(rc) versus Hb(rc) − Vb(rc)/2, five data points of w = 0, ±0.025 and ±0.05 in eqn (4) were applied. Each plot was analysed using a regression curve of the cubic function, shown in eqn (5), where (x, y) = (Hb(rc) − Vb(rc)/2, Hb(rc)) (Rc2 > 0.99999 in usual).19
Parameter | 1 obsd | 2 obsd | 6 obsd | 7 obsd |
---|---|---|---|---|
a Se should be read Br and X being ignored for 7obsd. b Δr(Se, O1) = robsd(Se, 1O) − [rvdW(Se) + rvdW(O)]. c Δ∠SeC1C2 = ∠SeC1C2 − ∠SeC1C14. d Δ∠O1C13C14 = ∠O1C13C14 − ∠O1C13C12. | ||||
r(Se, O1)/Å | 2.382(2) | 2.284(2) | 2.661(2) | 2.919(4) |
Δr(Se, O1)b/Å | −1.04 | −1.14 | −0.76 | −0.45 |
r(Se, X)/Å | 2.586(1) | 2.3947(9) | 1.953(2) | — |
r(Se, C1)/Å | 1.918(5) | 1.902(3) | 1.910(2) | 1.903(5) |
∠O1SeX/° | 178.28(8) | 177.55(6) | 173.96(7) | — |
∠C1SeX/° | 100.3(1) | 98.16(9) | 99.65(9) | — |
∠SeC1C2/° | 124.3(3) | 124.8(2) | 120.7(2) | 114.0(4) |
∠SeC1C14/° | 116.9(3) | 115.9(2) | 121.0(2) | 124.7(3) |
Δ∠SeC1C2c/° | 7.4 | 8.9 | −0.3 | −10.7 |
∠O1C13C12/° | 121.7(4) | 122.0(3) | 120.4(2) | 119.4(4) |
∠O1C13C14/° | 118.5(4) | 117.8(3) | 120.8(2) | 122.3(4) |
Δ∠O1C13C14d/° | −3.4 | −4.2 | 0.4 | 2.9 |
∠SeC1C13O1/° | −0.2(4) | 2.1(2) | 0.7(1) | −0.4(3) |
∠XSeC1C13/° | 179.0(2) | 178.66(8) | 177.77(9) | — |
The observed Δr(Se, O1) values of 1, 2 and 6 are −1.04, −1.14 and −0.76 Å, respectively. The Δr(Se, O1) values for 1 and 2 are much larger in magnitude than those of Δr(Se, N) in N⋯Se–I (−0.28 Å) and N⋯Se–Br (−0.32 Å) in III. The much shorter Δr(Se, O1) values in 1 and 2 must be the strong driving force for the extremely stable nature of the species. The strongly attractive n(O1)⋯σ*(Se–X) σ(3c-4e) interactions must be the reason for the highly negative values of Δr(Se, O1). The excellent accepting ability of σ*(Se–X: X = I and Br) and the very good donating ability of np(O) are responsible for the attractive interactions. However, it is necessary to consider the steric compressive effect around O and Se for the highly negative Δr(Se, O1) values in 1 and 2, relative to Δr(Se, N) in III, since Δr(Br, O1) of 7 (−0.45 Å) is also highly negative.
The Δ∠SeC1C2 and Δ∠O1C13C14 values must also correlate strongly to the Δr(Se, O1) values. The observed values are 7.4° and −3.4°, respectively, for 1, and 8.9° and −4.2°, respectively, for 2, while they are −0.3° and 0.4°, respectively, for 6, and −10.7° and 2.9°, respectively, for 7. Why are the Δ∠SeC1C2 and Δ∠O1C13C14 values so highly negative in 1 and 2? We paid much attention to the cyclic O1SeC1C14C13 five-membered rings formed in the species. The ring contains 6π electrons, therefore, it will be stabilized more if the ring becomes closer to a regular pentagon, although the AO sizes of C, O and Se need to be considered. This must be the reason for Δ∠SeC1C2 and Δ∠O1C13C14 and Δr(Se, O1) being highly negative. The three factors operate together to stabilize the compounds.
The 1O and Se atoms placed at the anthracene-1,9-positions seem advantageous for keeping the five-membered rings planar. The Δ∠SeC1C2 and Δ∠O1C13C14 values in 6 are almost null in magnitude, which would arise from the much smaller attractive nature of n(O1)⋯σ*(Se–X) σ(3c-4e), relative to the case of 1 and 2. The values of Δ∠SeC1C2 and Δ∠O1C13C14 in 7 are highly positive. The very large repulsive O⋯Br σ(2c-4e) interaction must be responsible for the results, irrespective of the cyclic O1BrC1C14C13 6π five-membered ring formation. The contribution from the repulsive O⋯Br σ(2c-4e) interaction seems stronger than that of the cyclic O1SeC1C14C13 6π five-membered ring formation in this case.
After clarification of the structural features of 1, 2, 6 and 7, based on the observed results, the next extension is to draw the whole picture of the interactions, together with the structural features, based on the calculated results for 1–8.
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Fig. 3 Structural features around OSeX σ(3c-4e) in 1, 2, 3, 6 and 8 and around OBr σ(2c-4e) in 7. The observed values are shown with the calculated ones in parentheses. |
Species | 1 (Cs) | 2 (Cs) | 3 (Cs) | 4 (Cs) | 5 (Cs) | 6 (Cs) | 7 (C1) | 8 (C2) |
---|---|---|---|---|---|---|---|---|
a BSS-A stands for (S-TZP + 1s1p) and BSS-B does for (S-TZP + 1s1p) applied to O, Se and X with S-DZP to C and H. b Δr(Se, O1) = rcalcd(Se, O1) − [rvdW(Se) + rvdW(O)]. c Δ∠SeC1C2 = ∠SeC1C2 − ∠SeC1C14. d Δ∠O1C13C14 = ∠O1C13C14 − ∠O1C13C12. e Δrco(Se, O1) = rcalcd(Se, O1) − robsd(Se, O1). f Δrco(Se, X) = rcalcd(Se, X) − robsd(Se, X). g Δ∠coO1SeX = ∠calcdO1SeX − ∠obsdO1SeX. h Δ∠coSeC1C14 = ∠calcdSeC1C14 − ∠obsdSeC1C14. i Δ∠coO1C13C14 = ∠calcd O1C13C14 − ∠obsdO1C13C14. | ||||||||
r(Se, O1)/Å | 2.3803 | 2.3089 | 2.2784 | 2.1863 | 2.6359 | 2.6275 | 2.9168 | 2.6013 |
Δr(Se, O1)b/Å | −1.0397 | −1.1111 | −1.1416 | −1.2337 | −0.7841 | −0.7925 | −0.4532 | −0.8187 |
r(Se, X)/Å | 2.5574 | 2.3717 | 2.2275 | 1.8101 | 1.4623 | 1.9393 | — | 2.3391 |
r(Se, C1)/Å | 1.8970 | 1.8890 | 1.8851 | 1.8624 | 1.8915 | 1.8911 | 1.8776 | 1.9234 |
∠O1SeX/° | 177.91 | 176.41 | 175.49 | 171.67 | 165.43 | 173.45 | — | 173.75 |
∠C1SeX/° | 99.52 | 97.37 | 96.22 | 91.77 | 90.80 | 98.38 | — | 101.23 |
∠SeC1C2/° | 124.67 | 124.99 | 125.06 | 124.56 | 119.80 | 120.92 | 115.24 | 121.41 |
∠SeC1C14/° | 117.10 | 116.69 | 116.59 | 116.76 | 121.62 | 120.97 | 124.09 | 119.80 |
Δ∠SeC1C2c/° | 7.57 | 8.30 | 8.47 | 7.80 | −1.82 | −0.05 | −8.85 | 1.61 |
∠O1C13C12/° | 121.52 | 121.97 | 122.21 | 123.06 | 120.76 | 120.54 | 119.87 | 120.74 |
∠O1C13C14/° | 119.08 | 118.45 | 118.14 | 117.22 | 120.71 | 120.74 | 122.53 | 120.30 |
Δ∠O1C13C14d/° | −2.44 | −3.52 | −4.07 | −5.84 | −0.05 | 0.20 | 2.66 | −0.44 |
∠SeC1C13O1/° | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.49 |
∠XSeC1C13/° | 180.00 | 180.00 | 180.00 | 180.00 | 180.00 | 180.00 | 180.00 | 173.80 |
Δrco(Se, O1)e/Å | 0.0023 | 0.0249 | — | — | — | −0.0335 | −0.0022 | — |
Δrco(Se, X)f/Å | −0.0251 | −0.0230 | — | — | — | −0.0137 | — | — |
Δ∠coO1SeXg/° | 0.49 | −1.14 | — | — | — | −0.51 | — | |
Δ∠coSeC1C14![]() |
0.10 | 0.79 | — | — | — | −0.03 | −0.61 | — |
Δ∠coO1C13C14![]() |
1.18 | 0.65 | — | — | — | −0.06 | 0.23 | — |
The Se–Se bond distance in 8 is expected to be close to the Se–Br distance in 2, of which the calculated values are 2.339 Å and 2.372 Å, respectively. The difference between the two is 0.03 Å in magnitude, which satisfies the expectation. However, the Se⋯O1 distances in 8 and 2 are predicted to be 2.601 Å and 2.309 Å, of which the difference is 0.29 Å in magnitude. The difference (0.29 Å) in magnitude in the latter is much larger than that in the former (0.03 Å).
What factors operate to control the Se⋯O1 distances in 2 and 8? The factors can be explained by extending the aforementioned factors, the contributions from the attractive O⋯Se–X σ(3c-4e) interactions and the cyclic O1SeC1C14C13 6π five-membered rings formed in the species. The ring is commonly formed both in 8 and 2. Therefore, the main difference arises from the stability of OSeX σ(3c-4e), namely the difference in the accepting ability of σ*(Se–X), where the donating O atom is common for both. The accepting ability of σ*(Se–Br) in 2 is much higher than σ*(Se–Se) in 8, which is the main reason for the observed results.
It is instructive to examine the calculated Δr(Se, O1), Δ∠SeC1C2 and/or Δ∠O1C13C14 values in 1–6 and 8, together with Δr(Br, O1), Δ∠BrC1C14 and/or Δ∠O1C13C14 values in 7 shown in Table 2, for better understanding of the stability. Fig. 4 shows the plot of the Δr(Se, O1), Δ∠SeC1C2 and/or Δ∠O1 C13C14 values calculated for 1–6 and 8, with the corresponding values for 7. The expected order of the stability is shown by eqn (6), judging from the Δr(Se, O1) values. The order is supported by Δ∠SeC1C2 and Δ∠O1C13C14. The order can be explained similarly by extending the stabilising ability of OSeX σ(3c-4e)/OBr σ(2c-4e) and cyclic 6π five-membered rings. The O1⋯Se–X interactions can be understood easily by dividing the species into three groups of G(A), G(B) and G(C). The n(O)⋯σ*(Se–X) interactions in 1–4 are very strong, which form G(A). The very high accepting ability of σ*(Se–X: X = I, Br, Cl and F) is responsible for the results. G(B) contains 8, 5 and 6, of which n(O)⋯σ*(Se–X: X = Se, H and CMe) interactions have the σ*(Se–X) of moderate to weak accepting ability. On the other hand, 7 consists of G(C), of which O1⋯Br interaction is strongly repulsive.
4 > 3 > 2 > 1 ≫ 8 > 6 ≥ 5 ≫ 7 | (6) |
After clarifying the structural features of 1–4, the next extension is to elucidate the natures of the interactions.
Species (symmetry) | Interaction (O-*-Se-*-X) | ρ b(rc) (eao−3) | c∇2ρb(rc)c (au) | H b(rc) (au) | R (au) | θ (°) | C ii (unit)ii | θ p:CIV (°) | κ p:CIV (au−1) | Predicted nature |
---|---|---|---|---|---|---|---|---|---|---|
a Fig. 5 for molecular graphs with contour plots drawn on the optimized structures of 1–4. b Fig. S2† for molecular graphs with contour plots drawn on the optimized structures of 5–8. c ∇2ρb(rc) = Hb(rc) − Vb(rc)/2, where c = ħ2/8m. d R = (x2 + y2)1/2, where (x, y) = (Hb(rc) − Vb(rc)/2, Hb(rc)). e θ = 90° − tan−1(y/x). f C ij = ∂2E/∂fi∂fj, where i and j refer to internal coordinates, and fi and fj, corresponding to i and j, respectively, are the external force components acting on the system. g θ p = 90° − tan−1(dy/dx). h κ p = |d2y/dx|/[1 + (dy/dx)2]3/2. i The regular CS interaction of the CT-MC nature. j The SS interaction of Cov-w. k The regular CS interaction of the CT-TBP nature. l The regular CS interaction of the HB nature with covalency. m The pure CS interaction of the HB nature with no covalency. n The SS interaction of Cov-s. o The pure CS interaction of the vdW interactions. | ||||||||||
1 (Cs)j | O-*-Se | 0.048 | 0.016 | −0.005 | 0.0170 | 108.7 | 2.48 | 159.6 | 52.9 | r-CS/CT-MCi |
Se-*-I | 0.084 | −0.001 | −0.032 | 0.0325 | 181.7 | 0.68 | 191.9 | 1.3 | SS/Cov-wj | |
2 (Cs)j | O-*-Se | 0.055 | 0.017 | −0.009 | 0.0192 | 119.1 | 2.43 | 168.7 | 27.4 | r-CS/CT-MC |
Se-*-Br | 0.094 | 0.001 | −0.039 | 0.0390 | 178.6 | 0.64 | 190.8 | 1.2 | r-CS/CT-TBPk | |
3 (Cs)j | O-*-Se | 0.058 | 0.017 | −0.011 | 0.0205 | 123.6 | 2.39 | 171.2 | 19.1 | r-CS/CT-MC |
Se-*- Cl | 0.107 | 0.001 | −0.052 | 0.0525 | 178.6 | 0.59 | 186.6 | 3.0 | r-CS/CT-TBP | |
4 (Cs)j | O-*-Se | 0.069 | 0.018 | −0.020 | 0.0265 | 138.1 | 1.96 | 174.7 | 2.8 | r-CS/CT-MC |
Se-*-F | 0.140 | 0.039 | −0.085 | 0.0932 | 155.1 | 0.36 | 144.6 | 4.6 | r-CS/t-HBwcl | |
5 (Cs) | O-*-Se | 0.028 | 0.012 | 0.001 | 0.0121 | 84.5 | 2.28 | 109.2 | 102.8 | p-CS/t-HBncm |
Se-*-H | 0.180 | −0.032 | −0.150 | 0.1532 | 192.0 | 0.28 | 178.3 | 4.3 | SS/Cov-sn | |
6 (Cs) | O-*-Se | 0.028 | 0.012 | 0.001 | 0.0123 | 85.2 | 2.22 | 110.2 | 100.9 | p-CS/t-HBnc |
Se-*-CMe | 1.516 | −0.020 | −0.098 | 0.0995 | 191.4 | 0.37 | 189.1 | 4.0 | SS/Cov-w | |
7 (C1) | O-*-Br | 0.018 | 0.008 | 0.002 | 0.0086 | 77.0 | 2.86 | 84.9 | 34.4 | p-CS/vdWo |
8 (C2)j | O-*-Se | 0.030 | 0.012 | 0.001 | 0.0125 | 87.6 | 2.46 | 115.5 | 152.3 | p-CS/t-HBnc |
Se-*-Se | 0.105 | −0.005 | −0.048 | 0.0483 | 185.5 | 0.57 | 194.0 | 1.9 | SS/Cov-w |
The intrinsic dynamic and static natures of the interactions in question are easily understood, if they are discussed separately as those of G(A), G(B) and G(C). The natures of O-*-Se and Se-*-X (X = I (1), Br (2), Cl (3) and F (4)) in G(A) are discussed first. The (R, θ, θp) values of Se-*-X in 1–4 are (0.033 au, 181.7°, 191.9°), (0.039 au, 178.6°, 190.8°), (0.053 au, 178.6°, 186.6°) and (0.093 au, 155.1°, 144.6°), respectively. Therefore, the Se-*-I, Se-*-Br, Se-*-Cl and Se-*-F interactions in 1–4 are predicted to have the SS/Cov-w, r-CS/CT-TBP, r-CS/CT-TBP and r-CS/t-HBwc natures, respectively. However, the natures of Se-*-Br and Se-*-Cl interactions seem close to the border area between SS/Cov-w and r-CS/CT-TBP, judging from the θ values. The (R, θ, θp) values of O-*-Se in 1–4 are (0.017 au, 108.7°, 159.6°), (0.019 au, 119.1°, 168.7°), (0.021 au, 123.6°, 171.2°) and (0.027 au, 138.1°, 174.7°), respectively. Therefore, the O-*-Se interactions in 1–4 are all predicted to have the r-CS/CT-MC nature. The O-*-Se interactions become stronger in the order of 1 < 2 < 3 < 4.
The (R, θ, θp) values of Se-*-H in 5, Se-*-CMe in 6 and Se-*-Se in 8 of G(B) are (0.153 au, 192.0°, 178.3°), (0.100 au, 191.4°, 189.1°) and (0.048 au, 185.5°, 194.0°), respectively. Therefore, the interactions are predicted to have the SS/Cov-s, SS/Cov-w and SS/Cov-w natures, respectively. The (R, θ, θp) values of O-*-Se in 5, 6 and 8 are (0.012–0.013 au, 84.5–87.6°, 109.2–115.5°), therefore, the interactions are all predicted to have the p-CS/t-HBnc natures. The natures are very close to each other. The (R, θ, θp) values for O-*-Br in 7 of G(C) are (0.009 au, 77.0°, 84.9°). As a result, it is predicted to have the negligibly weak p-CS/vdW nature.
The strengths of n(O)⋯σ*(Se–X) σ(3c-4e) in 1–6 are further examined by comparing their O-*-Se interactions with those in 2-C6H4(CHO)SeX (II: X = I, Br, Cl, F, H and Me) and 2-C6H4(CH2OMe)SeX (IV: X = I, Br, Cl, F, H and Me), where IV corresponds to the structure shown in Fig. 1a, of which G is replaced by MeO. The QTAIM-DFA plot of Hb(rc) versus Hb(rc) − Vb(rc)/2 for O-*-Se of 1–6, II (X) and IV (X) is shown in Fig. S4 of ESI,† where the perturbed structures are generated with CIV (see Table S2 of ESI† for the data of II (X) and IV (X), Fig. S5 and S6† for molecular graphs with contour plots drawn on the optimized structures of II (X) and IV (X), respectively). The rough order of the strengths is shown in eqn (7). Two types of basic orders are derived from eqn (7). One is O-*-Se (X = I) < O-*-Se (Br) < O-*-Se (Cl) < O-*-Se (F), if the members of a common structure are compared, and another is O-*-Se (IV) < O-*-Se (II) < O-*-Se (1–6), if the interactions of the same X are compared.
![]() | (7) |
The Δθp values are plotted versus θ for the O-*-Se and Se-*-X interactions in 1–6, II and IV in Fig. 7. Three dotted lines are drawn in black, blue and red, which show the typical areas or borders of the normal, weak normal and inverse behaviour of interactions, respectively.35 As shown in Fig. 7, all interactions in 1–6, 8, II (X) and IV (X) show the normal behaviour, except for Se-*-F in (4, II (F) and IV (F)), Se-*-H in (5, II (H) and IV (H)) and Se-*-CMe in (6, II (Me) and IV (Me)), although Se-*-Cl in (3, II (Cl) and IV (Cl)) and Se-*-O in (II (H), II (Me), IV (H) and IV (Me)) show the weak normal behaviour.
![]() | ||
Fig. 7 Plots of Δθp (=θp − θ) versus θ for O-*-Se and Se-*-X in 1–6, II (X) and/or IV (X), calculated with MP2/BSS-A and O-*-Se and Se-*-Se in 8 with MP2/BSS-B (θβ = 207.7°). |
The inverse behaviour can be recognized in the plot in Fig. 6, if the plot is carefully observed. The plots in Fig. 6 show a right-handed smooth stream, as a whole, which is a typical sign for θp > θ after the analysis of the plots. However, the plot for Se-*-F of 4 shows a direction perpendicular to the whole stream, which is a typical sign for θp < θ after the analysis. The plots for Se-*-H of 5 and Se-*-CMe of 6 seem to show a similar trend to that of Se-*-F in 4, although the trends are weak. The analysed (θ, θp) values are (155.1°, 144.6°) for Se-*-F in 4, (192.0°, 178.3°) for Se-*-H in 5 and (191.4°, 189.1°) for Se-*-CMe in 6, of which θp are all smaller than θ. The inverse behaviour tends to appear in the interactions in which the atomic numbers and natures between the connected atoms are largely different.35
The contributions of the CT terms are evaluated for the n(O)⋯σ*(Se–X) σ(3c-4e) interactions in 1–6 and 8 with the NBO analysis. The strength of the interactions is discussed based on E(2), next.
E(2) = qiF(i,j)2/(Ej − Ei) | (8) |
Species (symmetry) | NBO(i) → NBO(j) | E(2)b (kcal mol−1) | ΔEc (au) | F(i,j)d | NBO(i) → NBO(j) | E(2)b (kcal mol−1) | ΔEc (au) | F(i,j)d |
---|---|---|---|---|---|---|---|---|
a BSS-A stands for (S-TZP + 1s1p) and BSS-B does for (S-TZP + 1s1p) applied to O, Se and X with S-DZP to C and H. b Second order perturbation energy given by eqn (8). c The diagonal elements (orbital energies). d The off-diagonal NBO Fock matrix element. | ||||||||
1 (Cs) | ns(O) → σ*(Se–I) | 4.93 | 0.79 | 0.056 | np(O) → σ*(Se–I) | 25.68 | 0.42 | 0.093 |
2 (Cs) | ns(O) → σ*(Se–Br) | 5.58 | 0.80 | 0.060 | np(O) → σ*(Se–Br) | 33.17 | 0.46 | 0.110 |
3 (Cs) | ns(O) → σ*(Se–Cl) | 5.89 | 0.82 | 0.062 | np(O) → σ*(Se–Cl) | 35.66 | 0.49 | 0.118 |
4 (Cs) | ns(O) → σ*(Se+ F−) | 8.93 | 0.68 | 0.070 | np(O) → σ*(Se+ F−) | 75.24 | 0.40 | 0.154 |
5 (Cs) | ns(O) → σ*(Se–H) | 2.02 | 1.01 | 0.040 | np(O) → σ*(Se–H) | 5.31 | 0.57 | 0.049 |
6 (Cs) | ns(O) → σ*(Se–CMe) | 1.88 | 0.99 | 0.039 | np(O) → σ*(Se–CMe) | 5.78 | 0.54 | 0.050 |
8 (C2) | ns(O) → σ*(Se–Se) | 2.30 | 0.85 | 0.039 | np(O) → σ*(Se–Se) | 7.93 | 0.43 | 0.052 |
The contributions from the ns(O)⋯σ*(Se–X) and np(O)⋯σ*(Se–X) interactions are 4.9 ≤ E(2) ≤ 8.9 kcal mol−1 and 25.7 ≤ E(2) ≤ 75.2 kcal mol−1, respectively, for G(A) of 1–4, while the contributions are 1.9 ≤ E(2) ≤ 2.3 kcal mol−1 and 5.3 ≤ E(2) ≤ 7.9 kcal mol−1, respectively, for G(B) of 5, 6 and 8. The contributions for G(A) of 1–4 are much larger than the corresponding ones for G(B) of 5, 6 and 8. The much larger contributions from σ*(Se–X: X = I, Br, Cl and F) in G(A), relative to the case of σ*(Se–X: X = Se, H, and CMe) in G(B) are confirmed again, based on E(2). The order in E(2) for np(O)⋯σ*(Se–X) can be described by eqn (9) and the order for ns(O)⋯σ*(Se–X) seems similar, although the values are (very) small, relative to the former.
4 ≫ 3 > 2 > 1 ≫ 8 > 6 ≥ 5 | (9) |
What are the relations between E(2) and Δr(Se, O1) and Cii−1? The E(2) values for ns(O)⋯σ*(Se–X), np(O)⋯σ*(Se–X) and ns+p(O)⋯σ*(Se–X) are plotted versus Δr(Se, O1) for 1–6 and 8. Fig. 8 shows the plot. The E(2) values for ns(O)⋯σ*(Se–X), np(O)⋯σ*(Se–X) and ns+p(O)⋯σ*(Se–X) increase proportionally as Δr(Se, O1) becomes more negative. The plot of E(2) for ns(O)⋯σ*(Se–X) versus Δr(Se, O1) for 1–6 and 8 gave a (very) good correlation (y = –13.54x − 8.89: Rc2 = 0.946), and excellent correlation for np(O)⋯σ*(Se–X) (y = –84.70x − 61.37: Rc2 = 0.999) was also obtained, so was the plot for ns+p(O)⋯σ*(Se–X) (y = –95.99x − 68.30: Rc2 = 0.999), where the data for 4 was omitted from the correlation(s). The E(2) value for 4 is evaluated as much larger than that expected from the correlation. The zwitterionic nature of Se+⋯X−, resulting from the very high polar nature of Seδ+–Xδ−, must be responsible for the deviation(s).
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Fig. 8 Plots of E(2) versus Δr(Se, O1) in the nk(O) → σ*(Se–X) interactions (k = s, p and s + p) for 1–6 calculated with MP2/BSS-A and 8 with MP2/BSS-B. |
The E(2) values for ns(O)⋯σ*(Se–X), np(O)⋯σ*(Se–X) and ns+p(O)⋯σ*(Se–X) for 1–6 and 8 are similarly plotted versus Cii−1. Fig. 9 shows the plot. The E(2) values for ns(O)⋯σ*(Se–X), np(O)⋯σ*(Se–X) and ns+p(O)⋯σ*(Se–X) increase proportionally as Cii−1 increases for 1–4, but the similar relation seems difficult to find for 5, 6 and 8. Therefore, the correlations can be discussed only for the data from 1–4. The correlations of E(2) versus Cii−1 in 1–4 were (very) good for ns(O)⋯σ*(Se–X) (y = 34.98x − 8.88: Rc2 = 0.994), np(O)⋯σ*(Se–X) (y = 438.97x − 148.51: Rc2 = 0.997) and ns+p(O)⋯σ*(Se–X) (y = 473.95x − 157.40: Rc2 = 0.997). The very large E(2) value of 4 is well correlated to the corresponding Cii−1 value. In the case of 5, 6 and 8, the E(2) values do not correlate well to the Cii−1 values, where the E(2) values are much smaller than expected for those Cii−1 values.36
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Fig. 9 Plots of E(2) versus Cii−1 in the nk(O) → σ*(Se–X) interactions (k = s, p and s + p) for 1–6 calculated with MP2/BSS-A and 8 with MP2/BSS-B. |
Judging from the EF values, 1-ATQSeX becomes more stable in the order of X = I < Br < Cl < F. The order seems just the inverse of the experimental impressions. The actual inverse order of the reactivity would be responsible for the experimental impressions. The overall trends in the EF values of PhSeX seem very similar to those of 1-ATQSeX. However, examining the individual values, the differences become clear. Based on EFES and EFZP, 1-ATQSeI is predicted to be more stable than the components by 5–6 kJ mol−1, whereas PhSeI is less stable than the components by 6 kJ mol−1. The results show that ArSeI would be less stable than the components; however, it could be more stable than the components if the Se–I bond is suitably stabilized, as in 1-ATQSeI. Nevertheless, the stability of ArSeI seems almost the same as that of the components, if discussed with EFFE. ArSeI would be stabilized about 10 kJ mol−1, if the Se–I bond is suitably stabilized. The stabilizing effect seems much larger for Se–X in the order of X = I < Br < Cl < F, although the reactivity of the bonds is contained in the experimental impressions.
The Se–X bonds in 1-ATQSeX (X = I, Br, Cl and F) are predicted to be longer than the corresponding values in PhSeX (X = I, Br, Cl and F, respectively), by 0.04–0.06 Å (Table 5), which demonstrates well the expectations that the Se–X bonds will be longer if stabilized as in O⋯Se–X. The observed Se–I bond length in 1-ATQSe-I (2.5825(7) Å) is longer than that reported for BpqSe-I (2.5203(11) Å, see Fig. 1) by 0.062 Å. The results show very good concurrence between the calculated and observed results. The effect from O on Se–X seems very small for 5 and 6, based on the Δr(Se,X) values, for example.
Species/no (symmetry) | E ES (au) | EFESc (ΔEFES) (kJ mol−1) | EFZP (ΔEFZP)d,e (kJ mol−1) | EFFE (ΔEFFE)f (kJ mol−1) | ΔEFFEf (kJ mol−1) | Δr(Se,X)g (Å) |
---|---|---|---|---|---|---|
a BSS-B stands for (S-TZP + 1s1p) applied to O, Se and X with S-DZP to C and H.
b Calculated energy on the potential surface. EES(8: C2) = −6172.78111 au, EES(PhSeSePh: C2) = −5261.96523 au, EES(I2: D∞h) = −13![]() |
||||||
1 (Cs) | −10![]() |
−5.7 (as 0.0) | −5.4 (0.3) | −9.3 (−3.6) | −7.7 | 0.046 |
2 (Cs) | −5659.02673 | −32.0 (as 0.0) | −31.0 (1.0) | −34.2 (−2.2) | −17.5 | 0.053 |
3 (Cs) | −3546.06692 | −52.4 (as 0.0) | −50.9 (1.5) | −54.2 (−1.8) | −22.7 | 0.055 |
4 (Cs) | −3186.09508 | −198.2 (as 0.0) | −195.1 (3.1) | −197.8 (0.4) | −42.5 | 0.043 |
5 (Cs) | −3086.96085 | 43.4 (as 0.0) | 43.0 (−0.4) | 37.7 (−5.7) | 25.8 | −0.001 |
6 (Cs) | −3126.14319 | 20.6 (as 0.0) | 28.0 (7.4) | 15.1 (−5.5) | −16.0 | 0.009 |
PhSeI (C1) | −9549.05745 | 6.2 (as 0.0) | 6.2 (0.0) | −1.6 (−7.8) | As 0.0 | As 0.0 |
PhSeBr (C1) | −5203.61009 | −9.1 (as 0.0) | −8.9 (0.2) | −16.7 (−7.6) | As 0.0 | As 0.0 |
PhSeCl (C1) | −3090.63715 | −24.0 (as 0.0) | −23.5 (0.5) | −31.5 (−7.5) | As 0.0 | As 0.0 |
PhSeF (C1) | −2730.55830 | −148.8 (as 0.0) | −147.4 (1.4) | −155.3 (−6.5) | As 0.0 | As 0.0 |
PhSeH (C1) | −2631.55217 | 22.5 (as 0.0) | 27.5 (5.0) | 11.9 (−10.6) | As 0.0 | As 0.0 |
PhSeMe (Cs) | −2670.73597 | 41.5 (as 0.0) | 39.9 (−1.6) | 31.1 (−10.4) | As 0.0 | As 0.0 |
Table 6 summarizes the calculated ν(CO) values (νcalcd(C
O)) for 1–8 under MP2/BSS-B. Each νcalcd(C
O) consists of two signals.
No |
ν
calcd(C![]() |
ν
calcd:av(C![]() |
Δνcalcd(C![]() |
Δνobsd(C![]() |
---|---|---|---|---|
a Δνcalcd(C![]() ![]() ![]() |
||||
1 | 1633.9; 1684.2 | 1659.1 | 50.3 | 1635; 1680 |
2 | 1631.3; 1683.7 | 1657.5 | 52.4 | |
3 | 1630.9; 1683.5 | 1657.2 | 52.6 | |
4 | 1630.6; 1682.2 | 1656.4 | 51.6 | |
5 | 1664.6; 1685.9 | 1675.3 | 21.3 | |
6 | 1661.6; 1685.0 | 1673.3 | 23.4 | 1667 |
7 | 1682.4; 1691.4 | 1686.9 | 9.0 | 1681 |
8 | 1656.5; 1685.3 | 1670.9 | 28.8 |
Table 6 contains the average values (νcalcd:av(CO)) and the differences between the two (Δνcalcd(C
O)). The νcalcd(C
O) values of 1–7, obtained under MP2/BSS-A, are collected in Table S3 of the ESI.† The νcalcd:av(C
O) values are 1656–1659 cm−1 for 1–4 and 1671–1675 cm−1 for 5, 6 and 8 with 1687 cm−1 for 7, while the Δνcalcd(C
O) values are 50–53 cm−1 for 1–4 and 21–29 cm−1 for 5, 6 and 8 with 9 cm−1 for 7. The orders of νcalcd:av(C
O) and Δνcalcd(C
O) are shown in eqn (10) and (11), respectively. The orders are (just) the inverse with each other. The contributions from n(O)⋯σ*(Se–X) σ(3c-4e) to νcalcd:av(C
O) and Δνcalcd(C
O) are not clear, but the order shown in eqn (11) is well correlated to those in eqn (6) and (9). The results remind us of the relationship between the order in Δνcalcd(C
O) and that of the stability based on Δr(Se, O1) and that in E(2) calculated for np(O)⋯σ*(Se–X) with NBO. The results could be rationalized by considering that the order in Δνcalcd(C
O) is closely related to ΔΔν(C
O), which will be γB − γA, if βB = βA and β′B = β′A.
4 < 3 ≤ 2 < 1 ≪ 8 < 6 < 5 ≪ 7 | (10) |
3 ≥ 2 > 4 > 1 ≫ 8 ≫ 6 > 5 ≫ 7 | (11) |
Table 6 also contains the observed values (νobsd(CO)) for 1, 6 and 7, where only νL(C
O) are detected for 6 and 7. To clarify the behaviour of ν(C
O) in 1–8, more, the observed values and the calculated values under MP2/BSS-A and MP2/BSS-B are plotted versus those calculated with MP2/BSS-B, where the latter plot is for the standard. Fig. 10 shows the plot. The correlation for the plot of ν(C
O) with MP2/BSS-A for 1–7 is excellent (y = 1.124x − 204.1: Rc2 = 0.998). The data points of νobsd(C
O) of 1, 6 and 7 appear very close to the plot for those calculated with MP2/BSS-B and the points correlate well with the values calculated under MP2/BSS-B (y = 0.904x + 159.8: Rc2 = 0.975). The ν(C
O) values for 1–8 are better understood through the plot in Fig. 10, together with eqn (10) and (11).
![]() | ||
Fig. 10 Plots of νobsd(C![]() ![]() ![]() ![]() ![]() ![]() ![]() |
While the Se-*-I, Se-*-Br, Se-*-Cl and Se-*-F interactions in 1–4 are predicted to have the SS/Cov-w, r-CS/CT-TBP, r-CS/CT-TBP and r-CS/t-HBwc natures, respectively, the O-*-Se interactions in 1–4 are all predicted to have the r-CS/CT-MC natures, where the O-*-Se interactions seem stronger in the order of 1 < 2 < 3 < 4. The E(2) values of 1–6 and 8, calculated with the NBO analysis, correlated excellently with Δr(Se, O1), except for Se-*-F, for which E(2) is evaluated to be much larger, perhaps due to the contribution as the twitter-ionic Se+–F− form. The correlation between E(2) and Cii−1 was also examined. The correlation was very good for all Se-*-X in 1–4, although data for 5, 6 and 8 deviated from the correlation.
The results will help in the design of stable selanyl halides, and in sulfenyl halides and tellanyl halides.
Footnote |
† Electronic supplementary information (ESI) available: Computational data, and the fully optimized structures given by Cartesian coordinates for 1–8, II, and IV. CCDC 2339576, 2339577, 2339579 and 2339580. For ESI and crystallographic data in CIF or other electronic format see DOI: https://doi.org/10.1039/d4dt00760c |
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