Open Access Article
Harindu
Rajapaksha
a,
Grant C.
Benthin
a,
Emma L.
Markun
a,
Sara E.
Mason
*ab and
Tori Z.
Forbes
*a
aDepartment of Chemistry, University of Iowa, Iowa City, IA 52242, USA. E-mail: tori-forbes@uiowa.edu
bCenter for Functional Nanomaterials, Brookhaven National Laboratory, Upton, NY 11973, USA. E-mail: smason@bnl.gov
First published on 17th January 2024
The actinyl tetrachloro complex [An(V/VI)O2Cl4]2−/3− tends to form discrete molecular units in both solution and solid state materials, but related aquachloro complexes have been observed as both discrete coordination compounds and 1-D chain topologies. Subtle differences in the inner sphere coordination significantly influence the formation of structural topologies in the actinyl chloride system, but the exact reasoning for these variations has not been delineated. In the current study, we present the synthesis, structural characterization, and vibrational analysis of two 1-D neptunyl(V) chain compounds: (CH6N3)2[NpO2Cl3] (Np-Gua) and Rb[NpO2Cl2(H2O)] (Np-Rb). Bonding and non-covalent interactions (NCIs) in the systems were evaluated using periodic Density Functional Theory (DFT) to link these properties to related phases. We observed ∼6.5% and ∼3.9% weakening of Np
O bonds in Np-Gua and Np-Rb compared to the reference Cs3[NpO2Cl4]. NCI analysis distinguished specific assembly modes, where Np-Gua was connected via hydrogen bonding (N–H⋯Cleq and N–H⋯Oyl) and Np-Rb contained both cation interactions (Rb+⋯Oyl and Rb+⋯Cleq) and hydrogen bonding (Oeq–H⋯Oyl) networks. Thermodynamically viable formation pathways for both compounds were explored using DFT methodology. The [NpO2Cl4](aq)3− and [NpO2Cl3(H2O)](aq)2− substructures were identified as precursors to Np-Gua and [NpO2Cl3(H2O)](aq)2− and [NpO2Cl2(H2O)2](aq)− were isolated as the primary building units of Np-Rb. Finally, we utilized DFT to analyze the vibrational modes for Np-Gua and Np-Rb, where we found evidence of the Np
O bond weakening within the Np(V) chain structures compared to [NpO2Cl4]3−.
While the presence of aquachloro actinyl species has been systematically evaluated in solution, solid-state phases are much less well studied than the more common tetrachloro forms. Discrete U(VI), Np(VI), and Np(V) tetrachloro complexes have all been structurally characterized with a range of charge balancing cations, and they are widely used as synthons for crystal engineering or as model systems in the study of Non-Covalent Interactions (NCIs) in hybrid materials.8–16 Within the aquachloro complexes, only the [UO2Cl2(H2O)3],17 [C4H12N2]2[UO2Cl4(H2O)]Cl2
8 and [NMe4][NpO2Cl(H2O)4]Cl
18 coordination compounds have been synthesized and structurally characterized using X-ray diffraction techniques. These aquachloro structural building units have also been observed within extended 1-D chain topologies (e.g. UO2Cl2H2O,19 Cs[Np(V)O2Cl2(H2O)],20 K4[Np(V)O2)3Cl7(H2O)4],21 but no extended structures built from the [AnO2Cl4]2−/3− moiety have been noted in the literature. Prevalence of the isolated tetrachloro species compared to both 0-D and 1-D topologies for the aquachloro complexes suggests that subtle differences in the inner sphere coordination to the actinyl cation significantly influence the structural characteristics, but the exact reasoning for these variations has not been delineated.
In the current study, we evaluated the difference in bonding and intermolecular interactions that occur within Np(V) aquachloro species and the saturated tetrachloro complexes within solid materials. Herein, we report the synthesis, structural analysis, and Raman spectroscopy of two novel phases with Np(V) 1-D chain topologies formed by bridging chloride anions: (CH6N3)2[NpO2Cl3] (Np-Gua) and Rb[NpO2Cl2(H2O)] (Np-Rb). Periodic Density Functional Theory (DFT) was utilized to evaluate and compare the primary coordination sphere and NCIs of Np-Gua and Np-Rb to that of the isolated [NpO2Cl4]3− complex observed in Cs3[NpO2Cl4]. We then used DFT to propose a mechanism in the 1-D chain formation from individual molecular units and identify neptunyl vibrational features of these two phases.
25 software package. Hydrogen atoms associated with guanidinium and water were modeled with AFIX 93 and AFIX 7, respectively. Selected crystallographic parameters are summarized in Table 1 and thermal ellipsoids of Np-Gua and Np-Rb are given in the ESI (Section 1, Fig. S1 and S2†).
| Compound | Np-Gua | Np-Rb |
|---|---|---|
| Empirical formula | NpO2Cl3C2H12N6 | RbNpO3Cl2H2 |
| Crystal color and habit | Green | Green |
| Formula weight (g) | 495.53 | 443.39 |
| Crystal system | Orthorhombic | Monoclinic |
| a (Å) | 8.6197(3) | 8.4988(4) |
| b (Å) | 9.7216(4) | 11.3956(5) |
| c (Å) | 14.5517(6) | 7.4459(6) |
| α (°) | 90 | 90 |
| β (°) | 90 | 114.2050(10) |
| γ (°) | 90 | 90 |
| Unit cell volume (Å3) | 1219.39(8) | 657.73(7) |
| Temperature (K) | 136.01 | 137.76 |
| Density, ρ (g cm−3) | 2.699 | 4.478 |
| Space group | P212121 | C2/c |
| Z | 4 | 4 |
| μ (mm−1) | 9.168 | 23.873 |
| F(000) | 904.0 | 760.0 |
| Θ range (°) | 5.04 to 50.68 | 6.356 to 50.698 |
| Limiting indices | −10 ≤ h ≤ 10, −11 ≤ k ≤ 11, −17 ≤ l ≤ 17 | −10 ≤ h ≤ 10, −13 ≤ k ≤ 13, −8 ≤ l ≤ 8 |
| Ref. collected/unique | 47 334 |
12 453 |
| R int | 0.0315 | 0.0257 |
| Data/restraints/parameters | 2236/0/129 | 608/0/39 |
| GOF on F2 | 1.161 | 1.245 |
| R 1 ([I > 2σ(I)]) | 0.0070 | 0.0069 |
| wR2 ([I > 2σ(I)]) | 0.0174 | 0.0157 |
| R 1 (all data) | 0.0071 | 0.0070 |
| wR2 (all data) | 0.0174 | 0.0157 |
| Largest diff. peak/hole (e Å−3) | 0.31/−0.32 | 0.35/−0.51 |
| CCDC deposition number | 2287578 | 2287577 |
The Gaussian 16 software package44 was used to perform all molecular Density Functional Theory (DFT) computations. To model exchange correlation effects, the B3LYP (Becke, 3-parameter, Lee–Yang–Parr)45,46 hybrid function was used for the calculations. Van der Waals dispersion correction method DFT-D3 was again utilized with the Becke–Johnson damping term.38,39 The polarized triple zeta (def2-TZVP)47 basis set was utilized to represent the C, N, H, and Cl atoms, while the ECP60MWB pseudopotentials and ECP60MWB-SEG valence basis set were used for Np.48,49 Scalar relativistic effects are included by employing small-core Effective Core Potentials (ECPs), while spin–orbit effects are ignored.
Solvation in water was simulated with the Integral Equation Formalism Polarizable Continuum Model (IEFPCM).50,51 All structures were optimized with no symmetry constraints to a tight convergence criterion with Root Mean Square (RMS) force criterion of 1 × 10−5 Hartrees per radians. The calculated vibrational frequencies were monitored to ensure that structures were optimized to a true minimum. Structures manifesting imaginary frequencies underwent reoptimization with a finer integration grid and stringent convergence criteria (RMS force criterion of 1 × 10−6 Hartrees per radians), ensuring their progression towards true minima without imaginary frequencies.
O bond lengths of 1.818(3) and 1.826(2) Å, respectively. The neptunyl bond in both cases was nearly linear with O
Np
O angles of 179.63(10) for Np-Gua and 179.10(9)° for Np-Rb. For Np-Gua, five additional Cl− anions are present in the equatorial plane at an average distance of 2.8534(7) Å to create an overall pentagonal bipyramidal coordination geometry. Np-Rb has a similar coordination geometry, but one of the Cl− anions is replaced with a ligated water molecule. Np–Cl distances for Np-Rb are similar to that of Np-Gua, but the Np–OH2 distance is shorter at 2.452(2) Å. Both chains propagate through two μ2-Cl bridges, although there are differences in the orientation of the neptunyl polyhedra along the length of the chain (Fig. 1). Within Np-Rb, the neptunyl cations along the 1-D chain remain parallel, but in the case of Np-Gua they are canted due to a change in the angle of the μ2-Cl bridge. This can also be observed based upon the O
Np–Np
O dihedral angles of 7.48(2)° for Np-Gua and 0.82(2)° for Np-Rb (Fig. 2).
![]() | ||
| Fig. 2 The bond lengths (Å) and BOs of dimeric units in (a) Np-Gua, (b) Np-Rb and (c) [NpO2Cl4]3− units in Np-Cs.53,57 The dark green, light green and red sphere represent Np, Cl, and O atoms respectively. In ball and stick representation, the dashed sticks represent extended bonding. Tables with selected crystallographic bond lengths and bond angles are provided in the ESI, Section 2.1.† | ||
Within the Np(V) chloride system, there are only a handful of known 1-D chain compounds that have been structurally characterized. The 1-D chains of Cs[NpO2Cl2(H2O)] are formed by edge sharing neptunyl(V) polyhedrons that are linked via bridging Cl−.20 In contrast, K4[(NpO2)3Cl7(H2O)4] chains are formed as a consequence of bridging Cl− and neptunyl–neptunyl interactions. While the 1-D structural topology within Np-Rb is isostructural to the previously reported Cs[NpO2Cl2(H2O)] compound,20 the chain topology for the Np-Gua has not been noted in the literature for either Np or U solids. In the Np(VI) chloride system, only one 1-D chain compound, [NpO2Cl2(THF)]n, has been structurally characterized. This compound exhibits a 1-D structural topology like Np-Rb, differing primarily in the valence state of Np and the substitution of water with tetrahydrofuran.52 It is also important to note that the individual molecular components within Np-Rb ([NpO2Cl5]4−) and Np-Gua ([NpO2Cl4(H2O)]3−) have not been crystallized as isolated units.
To gain further insight into the bonding within the Np(V) chain while preserving the periodicity, we determined Bond Orders (BOs) using periodic Density Functional Theory and compared them to the related reoptimized Cs3[NpO2Cl4] phase (Np-Cs).53 Compared to Np-Gua, Np-Cs has similar experimental Np
O bond lengths and has experimental Np–Cl bond lengths that are elongated by about ∼3.5%. For the Np-Rb chain, the experimental Np–Cl bond lengths on average show ∼3.0% elongation compared to (Np-Cs) and the Np
O BOs of [NpO2(μ2-Cl)4Cl]2−, [NpO2(μ2-Cl)4(H2O)]− and [NpO2Cl4]3− are 1.43, 1.47 and 1.53, respectively. These BOs indicate weakening of the neptunyl bond by ∼6.5% and ∼3.9% in [NpO2(μ2-Cl)4Cl]2− and [NpO2(μ2-Cl)4(H2O)]− compared to [NpO2Cl4]3−. This observed weakening of the bond could be caused by higher steric hindrance (4 vs. 5 equatorial coordination) as well as differences in non-covalent interaction by axial oxygen in the three different crystal structures.11,14–16 The total BOs of equatorial coordination varies as follows: [NpO2Cl4]3− (BO = 1.60) > [NpO2(μ2-Cl)4(H2O)]− (BO = 1.48) ≈ [NpO2(μ2-Cl)4Cl]2− (BO = 1.46). In Np-Gua, the BO of bridging chlorides and non-bridging chlorides remain comparable, while in Np-Rb the BOs of equatorial water remain identical to the chloride anions (Fig. 2 and ESI, Section 3, Table S8†). The significantly weaker equatorial bonding compared to axial bond suggests that equatorial bonding within the chain structures remains ionic.54–56
![]() | (1) |
![]() | (2) |
![]() | (3) |
![]() | (4) |
In eqn (1) the qi+ and qi− represent the partial atomic charges of hydrogen and hydrogen bond accepter. Whereas in eqn (2), the qj+ and qj− are partial charges of the cation and anion involved in the interaction. In these equations, r represents the interaction distance, and Z represents the number of formula units in the unit cell. Additionally, we determined the sum of bond order (BO“yl”sum) of all NCIs of a single axial oxygen with eqn (5) as a measure of axial oxygen engagement in NCIs.H
![]() | (5) |
The hydrogen bonding network of Np-Gua was mapped (Fig. 3a) and shows the presence of N–H⋯Cleq and N–H⋯Oyl hydrogen bonding, with EtotalH of −2196.37 kJ mol−1. When the hydrogen bonding BOs of bridging and non-bridging Cl− are compared, non-bridging Cl− have 2.5 times the hydrogen bonding ability compared to the bridging Cl− (ESI, Section 4, Table S22†). The Np-Rb crystal structure contains both cation interactions and hydrogen bonding interactions with energies of Etotalcation = −2538.98 kJ mol−1 and EtotalH = −528.15 kJ mol−1. Rb+⋯Cleq that were ∼0.1–0.3 Å longer than Rb+⋯Oyl interactions, yet Rb+⋯Cleq has 1.14 times higher BOs compared to Rb+⋯Oyl interactions (ESI, Section 4, Table S23†). Ligated water molecules present in the Np-Rb chains form strong hydrogen bonding (BO = 0.109) with the axial oxygens on the neighboring neptunyl(V) chains. The BO“yl”sum of Np-Cs was reported as 0.374,57 which allows us to rank the BO“yl”sum of complexes as Np-Cs > Np-Rb > Np-Gua (Table 2). This trend in BO“yl”sum and interaction energies can be rationalized as being related to the overall molecular charges as it goes from −3 in the isolated Np-Cs units to −2 and −1 for Np-Gua and Np-Rb, respectively. Even though the magnitude of the negative charge for Np-Rb is smaller than that of Np-Gua, the larger number of NCIs may be a result of additional hydrogen bonding with the equatorial water of neighboring chains. Since the primary coordination sphere is different between Np-Gua, Np-Rb and Np-Cs, we could not compare the influence of NCIs on the Np
O bond lengths. Our objective in analyzing the non-covalent interactions (NCIs) within Np chain structures is to emphasize the distinctions in their NCI networks when compared to an extensively studied Np-Cs system.
![]() | ||
| Fig. 3 The NCIs networks for (a) Np-Gua, (b) Np-Rb, and (c) Np-Cs57 compounds. The color of the interaction indicates the distance. (VESTA visualization files are provided as a part of the ESI.†) A legend provided below the image defines the molecular units, atoms, and interaction distances. | ||
| Compounds | No. H bonding interactions | No. cation interactions | E totalH (kJ mol−1) | E totalcation (kJ mol−1) | BO“yl”sum |
|---|---|---|---|---|---|
| Np-Gua | 15 | — | −2196.37 | — | 0.215 |
| Np-Rb | 4 | 8 | −2538.98 | −528.15 | 0.235 |
| Np-Cs 57 | — | 30 | — | −6656.86 | 0.374 |
O bond and reduce the symmetry, causing a red-shift in the peak position and the appearance of additional features.14–16,60
The experimental Raman spectrum of Np-Gua contains two peaks that are centered at 1009 cm−1 and 741 cm−1. To determine the origin of these peaks, we calculated the Raman active modes of Np-Gua using an isolated guanidinium cation and [(NpO2)2Cl8]6− dimer. The calculated guanidinium feature was observed at 1018 cm−1, while the [(NpO2)2Cl8]6− dimer had two vibrational bands at 770 cm−1 and 765 cm−1 for in-phase and out-of-phase symmetrical stretches (Fig. 4a and Table 3). Aided by this computational data, experimental features in the Np-Gua spectrum are assigned to the guanidium (1009 cm−1) and (NpO2)+ (741 cm−1) symmetric stretches. The calculation of vibrational modes of Np-Rb is done using the isolated dimer [(NpO2)2Cl6(H2O)2]4−. The Np-Rb experimental Raman spectrum has one prominent feature at 751 cm−1, and a minor feature at 716 cm−1 (Fig. 4b), while the calculated in-phase and out-of-phase ν1 vibrations are at 781 cm−1 and 776 cm−1 respectively. With the computational results, the peak at 751 cm−1 in the experimental spectrum can be assigned to (NpO2)+ symmetrical stretch, but the minor feature at 716 cm−1 did not align with any calculated features. This feature may have appeared due to distortion of the NpO2+ geometry caused by NCIs15 or due to minor impurity. According to the literature, the NaxNpIV(NpVO2)6(OH)1+xCl9(H2O)8−x (0 < x ≤ 1) phase has a feature at 717 cm−1; therefore, the impurity could be this phase or a related phase.61 Comparing the neptunyl symmetric stretch of the two compounds, we note that the ν1 in Np-Gua is 10 cm−1 redshifted compared to Np-Rb, which coincides with our prior observations regarding the trends in Np
O BO for these systems.
| Compounds | Experimental ν1 (cm−1) | Calculated ν1 (cm−1) | Calculated ν3 (cm−1) | ||
|---|---|---|---|---|---|
| In-phase | Out-of-phase | In-phase | Out-of-phase | ||
| Np-Gua | 741 | 770 | 765 | 781 | 776 |
| Np-Rb | 751 | 798 | 796 | 812 | 810 |
to
4)(H2O)(0
to
2)]−x (x = 1 to 3) complexes in aqueous media using molecular DFT. The true stationary point of these calculations was confirmed by the lack of imaginary vibrational frequencies. From these initial Np(V) aquachloro complexes, we then proposed a thermodynamically viable pathway for the chain formation to occur by assuming that these reactions occur via dissociative ligand substitution or addition, which is supported by literature precedent.6,7,62
The crystallization of Np-Gua occurs when the mother liquor is highly concentrated and has a high viscosity, where the [Cl−] > 10 M based on final concentrations. At such high chloride concentrations, NpO+ will coordinate to 3 or 4 equatorial chlorides.2 We computed the reaction enthalpy for the transformation of the [NpO2Cl(3
to
4)(H2O)(0
to
2)]2−
to
3− molecular species, initially forming a dimer [(NpO2)2Cl7](aq)5− in the first step. Subsequently, this dimer associates with monomeric units in the second step, resulting in the formation of [(NpO2)3Cl10](aq)7− trimers (Fig. 5). Calculations show that seven reactions are enthalpy favored to form the dimer, where the most energetically favorable is the dimerization of [NpO2Cl3(H2O)](aq)2− (Table 4, step 1, reaction (I)). None of the first step reactions were thermodynamically favorable with both monomeric species having tetrachloride coordination (ESI, Section 6, Table S28†). This may be due to this reaction leading to the cleavage of Np–Cl bonds and release of Cl− as HCl(aq). In the second step, only the reaction between [(NpO2)2Cl7](aq)5− and [NpO2Cl3(H2O)](aq)2− was energetically favored (ESI, Section 6, Table S28†), highlighting the crucial role of [NpO2Cl3(H2O)](aq)2− in Np-Gua chain formation, with potential chain propagation through its repeated occurrence.
| Step | Possible reactions | ΔH (kJ mol−1) | |
|---|---|---|---|
| 1 | (I) | 2[NpO2Cl3(H2O)](aq)2− + HCl(aq) → [(NpO2)2Cl7](aq)5− + H3O(aq)+ + H2O(aq) | −94.00 |
| (II) | [NpO2Cl4(H2O)](aq)3− + [NpO2Cl3(H2O)](aq)2− → [(NpO2)2Cl7](aq)5− + 2H2O(aq) | −46.17 | |
| (III) | [NpO2Cl4](aq)3− + [NpO2Cl3(H2O)](aq)2− → [(NpO2)2Cl7](aq)5− + H2O(aq) | −44.63 | |
| (IV) | 2[NpO2Cl3(H2O)2](aq)2− + HCl(aq) → [(NpO2)2Cl7](aq)5− + H3O(aq)+ + 3H2O(aq) | −34.50 | |
| (V) | [NpO2Cl4(H2O)](aq)3− + [NpO2Cl3(H2O)2](aq)2− → [(NpO2)2Cl7](aq)5− + 3H2O(aq) | −16.42 | |
| (VI) | [NpO2Cl4](aq)3− + [NpO2Cl3(H2O)2](aq)2− → [(NpO2)2Cl7](aq)5− + 2H2O(aq) | −14.88 | |
| 2 | (I) | [(NpO2)2Cl7](aq)5− + [NpO2Cl3(H2O)](aq)2− → [(NpO2)3Cl10](aq)7− + H2O(aq) | −23.47 |
In contrast, Np-Rb crystallization occurs considerably sooner during the slow evaporation of the aqueous solution; thus, the [Cl−] is likely at the appropriate level to contain dichloride coordination. Thus, we have included [NpO2Cl(2
to
4)(H2O)(0
to
3)]−
to
3− in our calculations. Here, we found that the dimerization of [NpO2Cl3(H2O)](aq)2−, is the most favorable reaction of step 1 (Table 5). Additionally, the [NpO2Cl3(H2O)](aq)2− reactions with [NpO2Cl3(H2O)2](aq)2− and [NpO2Cl2(H2O)2](aq)− were also found to be thermodynamically feasible (ESI, Section 6, Table S29†). Here, the trimer formation and chain propagation can happen via subsequent addition of [NpO2Cl(2
to
3)(H2O)(1
to
2)](aq)−
to
2− to the end of the oligomeric unit.
| Step | Possible reactions | ΔH (kJ mol−1) | |
|---|---|---|---|
| 1 | (I) | 2[NpO2Cl3(H2O)](aq)2− → [(NpO2)2Cl6(H2O)2](aq)4− | −34.27 |
| (II) | [NpO2Cl3(H2O)](aq)2− + [NpO2Cl2(H2O)2](aq)− + HCl(aq) → [(NpO2)2Cl6(H2O)2](aq)4− + H3O(aq)+ | −8.19 | |
| (III) | [NpO2Cl3(H2O)](aq)2− + [NpO2Cl3(H2O)2](aq)2− → [(NpO2)2Cl6(H2O)2](aq)4− + H2O(aq) | −4.52 | |
| 2 | (I) | [(NpO2)2Cl6(H2O)2](aq)4− + [NpO2Cl3(H2O)](aq)2− + H3O(aq)+ → [(NpO2)3Cl8(H2O)3](aq)5− + H2O(aq) + HCl(aq) | −56.66 |
| (II) | [(NpO2)2Cl6(H2O)2](aq)4− + [NpO2Cl2(H2O)2](aq)− → [(NpO2)3Cl8(H2O)3](aq)5− + H2O(aq) | −30.58 | |
| (III) | [(NpO2)2Cl6(H2O)2](aq)4− + [NpO2Cl3(H2O)2](aq)2− + H3O(aq)+ → [(NpO2)3Cl8(H2O)3](aq)5− + 2H2O(aq) + HCl(aq) | −26.91 | |
| (IV) | [(NpO2)2Cl6(H2O)2](aq)4− + [NpO2Cl2(H2O)3](aq)− → [(NpO2)3Cl8(H2O)3](aq)5− + 2H2O(aq) | −14.59 | |
O bond lengths within these chains are similar to those observed for the isolated [NpO2Cl4]3− coordination complex, however BO analysis indicates that the neptunyl bond is weakened by 6.5% compared to the molecular unit. NCI analysis determined that the Np-Gua compound is primarily assembled through charge assisted hydrogen bonding, where both N–H⋯Cleq and N–H⋯Oyl interactions are present and total interaction energy was −2196.37 kJ mol−1. The total interaction energy of Np-Rb was −3067.13 kJ mol−1 and the structure contained Rb+⋯Oyl, Rb+⋯Cleq and Oeq–H⋯Oyl NCIs. Raman spectroscopy showed that there was a red-shift in the neptunyl symmetric stretch of Np-Gua compared to Np-Rb, suggesting a weakening of the Np
O bond in Np-Gua. This conclusion is consistent with the trend in BO values for these structures. DFT calculations were also performed to evaluate the thermodynamic feasibility to form Np-Gua and Np-Rb from the molecular precursors, and the results suggest that propagation of the chain via dissociative ligand substitution reactions is thermodynamically favorable. Overall, this study provides a thorough investigation of the primary coordination sphere bonding, NCIs, chain formation reactions, and vibrational features for the Np(V) chloride chain systems.
Footnote |
| † Electronic supplementary information (ESI) available. CCDC 2287577 and 2287578. For ESI and crystallographic data in CIF or other electronic format see DOI: https://doi.org/10.1039/d3dt03630h |
| This journal is © The Royal Society of Chemistry 2024 |