Dominik
Plamper‡
a,
Allen
Vincent‡
b,
Kazuumi
Fujioka‡
b,
Rui
Sun
*b and
Karl-Michael
Weitzel
*a
aPhilipps-Universität Marburg, Fachbereich Chemie, 35032 Marburg, Germany. E-mail: weitzel@chemie.uni-marburg.de
bDepartment of Chemistry, University of Hawai‘i at Manoa, Honolulu, Hawaii 96822, USA. E-mail: ruisun@hawaii.edu
First published on 10th May 2024
Reactions in the system HBr+ + CH4 have been investigated inside a guided ion-beam apparatus under single-collision conditions. The HBr+ is vibrational and rotational state selected in the electronic X2Π1/2 state created by (2+1)-REMPI. Due to the exitation scheme employed different rotational states of the HBr+ are accessible. Four reaction channels have been observed. The cross section, σ, for the exothermic proton transfer channel (PT) decreases with increasing collision energy, steeper than predicted by the Langevin model. The cross section also decreases with increasing rotational energy in the HBr+, with the effect of the rotational energy being stronger than that of translational energy. The cross section for the endothermic charge transfer (CT) increased with increasing collision energy. The energy dependence is well reproduced by a simple line of center (loc) model. Although the bromine transfer (BT) is exothermic the observed cross section increased with increasing collision energy due to an activation barrier on the potential energy surface (PES). Analysis by a modified loc model suggest the relevance of an angle dependence of σ. The cross section for the endothermic hydrogen atom abstraction (HA) exhibits a maximum at 2 eV Ecm. The measured cross sections are rationalized by means of reaction dynamics simulations which show good agreement with the experimental cross sections. The dynamics simulations are carried out with a machine learning potential that is developed and benchmarked with ab initio molecular dynamics simulation. The absolute cross sections predicted by reaction dynamics simulations are well within the same order of magnitude while reproducing the trends over three different collision energies for all four reaction channels. Furthermore, the simulations demonstrate various reaction mechanisms for these reaction channels, including a very interesting HBr+ orientation selectivity for the BT reaction channel.
Since activation barriers in ion–molecule reactions are in general small, these reactions play a major role in the interstellar medium and in planetary ionospheres. Additionally long-range interactions like Coulomb or ion induced dipole interactions favor reactions of this type.10 Ion–molecule reactions (IMR) were essential in successfully describing the particle densities observed in interstellar clouds.11 The chemistry of the interstellar medium is characterized by low particle densities and low temperatures ranging from 10 K to 100 K.12,13 Due to the often barrierless IMRs small changes in the energetics of such systems can influence the outcome of this reaction type sensitively.12
IMR also form the basis for chemical ionization (CI) mass spectrometry. Munson and Field exploited the formation of CH5+ from methane and its subsequent proton transfer reactions for analyzing unknown compounds.14,15 Ultimately, this led to the development of the proton transfer reaction mass spectrometry (PTR MS) for on-line trace analysis down to the ppb level.16
The CH5+ ion is an intriguing chemical species and was subject of interest in numerous studies. Under laboratory conditions CH5+ ions can be formed by radiative association of CH3+ with H2 or by hydrogen atom abstraction in the reaction CH4+ + H2.12,17 Clearly, the CH5+ ion is a rather flexible molecular ion exhibiting a potential energy surface with shallow minima.
In fact, laboratory studies have been vital in reaching the current understanding of interstellar ion chemistry. Many studies aimed at measuring cross sections or rate constants either as a function of the temperature (in thermal ensembles) or as a function of the center of mass collision energy (typically in energy selected ensembles).18,19
Rather few studies have focused on the influence of the rotational quantum state of the reactants on the reaction dynamics. As a prominent example we mention the investigation of the reaction H2+ (v = 0,1 j = 0,4) + H2 with a single and merged beam approach.20 The observed cross section decreased with increasing vibrational and rotational excitation of the H2+ ions, with the effect of the rotation exceeding that of the vibration.20 Viggiano et al. analyzed the Kr+ + HCl system in a SIFT apparatus. Here, the increase of the rotational temperature of the neutral target, HCl, increased the rate constant for charge transfer considerably.21
The role of ion rotation in IMR has been studied in a number of cases focusing on hydrogen halide ions, HX+ with x = Cl and Br, for which the rotational constants are large allowing to address rotational selectivity in ion preparation. Conceptually, rotational effects may be expected to be large in reactions involving hydrogen halide ions. It has been argued that there is potential relevance of the hydrogen halide ions in the upper atmosphere of earth as well as other astronomical objects.22 Among the previous reaction systems investigated were the self-reactions of HCl23,24 and HBr.25 The authors groups also recently reported a combined experimental and theoretical study of the cross reaction system HBr+ + HCl.26
In the current work the study of rotational effects is extended to the system HBr+ + CH4. Here, four reaction channels are accessible, these are namely:
HBr+ + CH4 → Br + CH5+ (PT) |
HBr+ + CH4 → HBr + CH4+ (CT) |
HBr+ + CH4 → CH3 + H2Br+ (HA) |
HBr+ + CH4 → H + CH4Br+ (BT) |
Behind the second linear octopole ion guide the ions are transferred into a quadrupole mass spectrometer (QMS) with the help of 2 lens assemblies and a conical octopole ion guide.28
HBr+ was created in the X2Π1/2 electronic state by (2+1) resonance enhanced multiphoton ionization (REMPI) in its vibrational ground state.29,30 The REMPI transitions for ion creation were addressed with a tunable dye laser (CobraStrech, Sirah) which was pumped by a 20 Hz ND:YAG laser (INDI, Spectra Physics). The ion rotational energy was varied from 3.4 meV up to 46.8 meV. Experiments have been performed on the R(1), R(3), R(4), R(5), R(6) transition. The R(2) transition was not addressed since it overlaps with the S(0) transition. Ultimately, the REMPI excitation scheme allows to prepare HBr+ ions with narrow rotational state distribution dominated by few rotational states. The measured rotational distribution of the ions prepared on the pump lines has been reported by Penno et al.31
The collision energy in the center of mass frame was varied in the range from 0.25 eV up to 3 eV. The neutral reaction partner CH4 was introduced at room temperature with a dosing valve. The ions were analyzed by their mass to charge ration (m/z) with a Quadrupole Mass Spectrometer (QMS) and detected by a Channeltron. The signals were recorded with a multichannel scaler card (FAST ComTec, P7888). The HBr pressure was set to 5 × 10−6 mbar and the CH4 pressure to 3.5 × 10−5 mbar ensuring single collision conditions. The purity of the HBr gas was 3.5, that of the methane 4.5. The kinetic data in this study are based on the analysis of the ion species CH4+, CH5+, HBr+, H2Br+ and CH4Br+.
The second-order rate constant ki, where i indicates the reaction channel, is given in eqn (1) for the general case.
![]() | (1) |
Rate constants can either be transformed into cross sections employing eqn (2) assuming the velocity of the neutral target is negligible compared to that of the ion under the conditions chosen, or directly via the approach described by Armentrout.32 Here, the fact that the neutral target molecules are not at rest but exhibit an isotropic velocity distribution in laboratory space does not affect the value of the center of mass collision energy but its distribution.33,34 This corresponds to an uncertainty in Ecm as discussed by Plamper et al.26 As a consequence, reaction barriers may effectively be overcome at an Ecm nominally below that barrier. In the Ecm domain this uncertainty is on the order of ±130 meV.
![]() | (2) |
Experimental cross sections are complemented by theoretical data, in part derived from analytical models, but ultimately also from sophisticated molecular dynamics calculations.
For the exothermic reaction channels the experimental data are compared to the Langevin-model. According to the Langevin-model, the cross section of an exothermic ion–molecule reaction is given by35,36
![]() | (3) |
For target molecules with non-zero permanent dipole moment Su and Bowers developed a modified Langevin theory, the approximate dipole orientation (ADO) theory.37 Since the permanent dipole moment of the CH4 is very small (approx. 10−6 Db at room temperature),38 its justified to stay with the classical Langevin model of eqn (3). Empirically, the energy dependence of cross sections for exothermic reaction channels often deviates from the (1/Ecm)0.5 characteristic. To reflect this, the experimental data are modeled by eqn (4).
![]() | (4) |
For endothermic reaction channels, exhibiting an energetic threshold or a barrier to be overcome before reaction can proceed,40 the cross section can be modeled by eqn (5)41
![]() | (5) |
Throughout this work we will fix the value of n to n = 1. The classical loc model would be expected to apply for e.g. atom–atom reactions but also to reactions dominated by the center mass of two reactants.
For more complex reactions it may be necessary to account for sterical effects. In the simplest case one can define two line of centers and the angle between these two lines. In the reaction system investigated in this work one loc is the HBr+ axis, the second loc can be chosen to be the Br–C axis. For such a situation Levine and Bernstein suggested eqn (6) which takes into account this effect of relative orientation in a parameterized form.40,43,45 Here, D is the critical separation, which can be smaller than the hard-sphere separation, is the negative derivative of the reaction energy profile with respect to the cosine of the angle between the two axis mentioned above.43eqn (6) will be applied to the bromine transfer channel.
![]() | (6) |
Alternative models for describing cross sections for endothermic reactions have been elaborated in the literature.18,19,40,43,45,47
Method | PT (p1): CH5+ + Br | HA (p2): CH3 + H2Br+ | CT (p3): CH4+ + HBr | BT (p4): CH4Br+ + H | RMSE | |
---|---|---|---|---|---|---|
Experimental at 0 K, SO ground state | 8.61 (0.089) | 42.79 (0.443) | 91.55 (0.949) | — | — | |
“spin free” experimental | 7.09 | 27.83 | 75.74 | — | — | |
CCSD(T)-F12/cc-pVDZ-F12 | 5.08 | 30.71 | 86.71 | 25.75 | 6.65 | |
fc-MP2/cc-pVTZ- | — | 15.63 | 27.62 | 82.61 | 8.08 | 7.44 |
PP | 17.34 | 26.85 | 83.49 | 16.30 | 6.32 | |
LANL2DZ | 67.42 | 30.74 | 142.74 | 37.50 | 52.08 | |
LANL2DZdp | 38.19 | 38.01 | 112.20 | 21.44 | 28.28 | |
CRENBL | 110.40 | −10.92 | 133.10 | 1.55 | 71.79 | |
Stuttgart RLC | 60.91 | 32.78 | 133.64 | 40.54 | 45.72 |
The AIMD trajectories are further used as the training set to develop a machine learning (ML) potential to carry out simulations at a much faster rate. 171955 unique geometries (selected by comparing distance matrices, made of the reverse of pairwise distances between all atoms in the system, of configurations from AIMD trajectories with a threshold of 0.001 Å−1) and their energy and gradients are employed as the initial training (75%) and validation (25%) set. Several iterations of active learning were carried out – a preliminary trained ML-PES was used to propagate MLMD trajectories to potentially obtain novel geometries, which (along with their energy and gradients) were added to the training set and produce a new ML-PES. Schnetpack73,74 v1.0 is used for all ML-PES training and predictions. The MLMD trajectories are simulated using ASE's velocity Verlet integrator with a timestep of 0.15 fs and stopped when any two atoms are more than 20 Å apart. The MLMD trajectories are simulated starting from b = 0 with fixed increment Δb of 0.1 Å to bmax. The estimated bmax is 4.5, 3.8 and 3.8 Å for 0.5, 2.0 and 3.0 eV collision energies. Trajectories are rejected and restarted if the vibrational energy is lower than the zero-point energy for any species. The number of trajectories simulated at collision energies of 0.5, 2.0, and 3.0 eV, are 10
350, 8200 and 8200, respectively.
The analysis of the mass spectra results in the observation of four different reaction channels. These are namely the proton transfer (PT), the hydrogen abstraction (HA), the charge transfer (CT) and the bromine transfer (BT). The mass spectra is provided in the ESI.† In Fig. 2 the cross section of the total reaction and all observable reaction channels is shown as a function of the collision energy for an ion rotational energy of 3.4 meV.
The total cross section decreases with increasing collision energy as does the PT reaction cross section, which dominates the total cross section for collision energies below 2 eV. At collision energies above 2 eV the HA reaction becomes comparable to the PT reaction. The CT and BT reactions are the least efficient reactions and both of the same order of magnitude. Below 1 eV collision energy the latter channels do not proceed to a measurable extent. The total cross section is significantly below the Langevin prediction indicating that approximately every 4th collision leads to a reactive process.
Tichy et al. studied the reaction of HBr+ with CH4 in a SIFDT apparatus. The cross sections measured by Tichy et al. are larger than the numbers measured in this work, but in the same order of magnitude.75 One difference between the work of Tichy et al. and this work concerns the ion preparation: in this work the HBr+ is prepared in selected rovibronic states, whereas Tichy et al. employed electron impact ionization, presumably leading to a broader distribution of ionic states. In both studies, the PT reaction is the most efficient reaction at low collision energies. At collision energies around 1 to 2 eV center of mass the PT channel becomes comparable to the HA channel. The CT reaction is in both studies the least efficient reaction. In the present study this reaction channel has a threshold of around 0.5 eV, comparable to the earlier study by Tichy et al.75
In Fig. 3 the collision energy dependence of the PT reaction is presented. The different traces correspond to different ion rotational energies. The cross section decreases with increasing collision energy. Table 1 indicates a slightly positive heat of reaction for the PT channel referenced to the SO ground state of the HBr+. Here, the experimental observation of a cross section significantly decreasing with increasing collision energy suggests that the SO energy of the HBr+ ion prepared in the X2Π1/2 electronic state is available to the reaction, turning it effectively into an exothermic channel.
![]() | ||
Fig. 3 σ PT as a function of the collision energy Ecm for different ion rotational energies. The green dotted curve is the Langevin fit to the data for Erot = 3.4 meV according to eqn (4). |
In Table 2 the fit parameters for the PT reaction are assembled. Within the error margins the exponent n emerges constant. The decrease is much steeper than predicted by the Langevin model. With increasing rotational energy, the cross section decreases significantly, which is recognizable in Fig. 4 and indicated by the parameter A.
E rot/meV | A/(Å2·eVn) | n |
---|---|---|
3.4 | 4.16 ± 0.47 | −1.52 ± 0.09 |
15.9 | 3.93 ± 0.38 | −1.37 ± 0.07 |
24.8 | 3.55 ± 0.39 | −1.4 ± 0.09 |
35.9 | 3.3 ± 0.39 | −1.36 ± 0.09 |
46.8 | 2.68 ± 0.43 | −1.43 ± 0.12 |
Fig. 4 illustrates σPT as a function of the ion rotational energy. The cross section is highly dependent on this degree of freedom. By using the Langevin fit for the rotational energy of 3.4 meV the cross section decreases by the same amount in collision energy by 8.4 Å2 over 50 meV, whereas the same amount of rotational energy at 0.25 eV collision energy leads to a decrease of 13 Å2. Thus, the rotational motion of the ion has a larger influence on the reaction dynamics than the center of mass collision energy and is not only an additive contribution to the total excess energy.
As indicated in Fig. 5 the cross section of the HA reaction increases with increasing collision energy as expected for an endothermic reaction channel. The threshold behavior of σHA is modelled by eqn (5) fixing n = 1 in the range from Ecm = 0.25 eV up to 2 eV (i.e., the maximum of σHA). The fit parameters A, E0 and m are summarized in Table 3.
![]() | ||
Fig. 5 σ HA as a function of the collision energy shown for the investigated ion rotational energies. The applied fit model is discussed in the text below and summarized in eqn (5). |
E rot/meV | A/Å2 eVm−1 | E 0/eV | m |
---|---|---|---|
3.4 | 1.81 ± 0.16 | 0.16 ± 0.04 | 0.70 ± 0.12 |
15.9 | 2.03 ± 0.19 | 0.18 ± 0.04 | 0.83 ± 0.14 |
24.8 | 1.95 ± 0.01 | 0.15 ± 0.01 | 0.72 ± 0.01 |
35.9 | 2.11 ± 0.41 | 0.06 ± 0.12 | 0.60 ± 0.23 |
46.8 | 1.92 ± 0.04 | 0.09 ± 0.01 | 0.62 ± 0.03 |
Note, that the center of mass collisional energy as well as the rotational energy may help in overcoming the chemical threshold for the reaction. This fact is reflected in the observation, that the effective E0 fitted to the data decreases with increasing rotational energy (cf.Table 3). The decrease in E0 is in fact comparable to the concomitant increase in the rotational energy. The reaction barrier E0 derived (ca. 0.16 eV) matches well the heat of reaction assuming the SO energy of HBr+ is available to the reaction (0.443–0.328 eV).
At 2 eV Ecm the cross section has a distinct maximum. At even higher collision energies the cross section decreases significantly. The increase up to 2 eV can be modelled by the classical loc model suggesting that no angle dependence of the HA reaction is operative. This appears in line with the intuitive expectation, because the transition state for the HA reaction should not involve steric requirements. As complementation, a plot of the cross section for HA as a function of the rotational energy is presented in the ESI.†
In Fig. 6 the collision energy dependence of the CT reaction is presented. The green dotted line is a fit to the data for Erot = 3.4 meV according to eqn (5) with n and m equaling unity and a scaling factor A which reflects the line of centers (loc) model. All parameters obtained in the analysis of the CT reaction channel are listed in Table 4.
E rot/meV | A/Å2 | E 0/eV |
---|---|---|
3.4 | 0.63 ± 0.05 | 0.98 ± 0.06 |
15.9 | 0.63 ± 0.03 | 0.96 ± 0.03 |
24.8 | 0.55 ± 0.06 | 0.92 ± 0.08 |
35.9 | 0.52 ± 0.03 | 0.93 ± 0.05 |
46.8 | 0.52 ± 0.04 | 0.98 ± 0.06 |
The model fits the experimental data quite well. The threshold of the reaction, E0, is found to be 0.95 ± 0.03 eV for all investigated rotational energies. The almost exact agreement between this threshold and the experimental heat of reaction given in Table 1 is fortuitous. In principle the true molecular threshold could be higher than the numbers given in Table 1 due to the smearing out of center of mass collision energies.34 For a step like model for the cross section this could lead to observing products some 0.25 eV below the true threshold. For the rather shallow increase of σ with Ecm as operative in the loc model (and also in the modified loc model), convolution with the thermal velocity distribution of the neutral target reveals an effective additional smearing out which is below 50 meV. Given the limited number of data points we would be reluctant to overinterpret the threshold values. On the other hand, it suggests that the SO energy deposited in the HBr+ ion upon preparation is not available for the reaction in this channel. Evaluating the PES of the CT reaction (cf.Fig. 8(c)) there is no indication of additional activation barriers. As complementation, a plot of the cross section for CT as a function of the rotational energy is presented in the ESI.†
In Fig. 7 the collision energy dependence of the BT reaction is presented. Overall, the efficiency of the BT reaction is comparable to that of the CT reaction. However, the characteristics of the variation of σ with Ecm is distinctly different.
Below 1 eV collision energy no reaction is observable. Above this threshold, the cross section for BT has been fitted both by the simple loc model and the modified loc model. Quite obviously the modified loc model fits significantly better to the experimental data shown in Fig. 7. We conclude that the BT channel must be subject to sterical restriction. Note, that in the modeling, the critical distance D was chosen to be 2.53 Å using the covalent radii of H, Br and C. An overview over the fit parameter obtained for all rotational energies of the HBr+ is given in Table 5. As complementation, a plot of the cross section for BT as a function of the rotational energy is presented in the ESI.†
The data shows the typical behavior of a reaction with a threshold. The ab initio potential energy surface (cf.Fig. 8(d)) shows an activation barrier for the spin-free BT reaction channel lying around 0.54 eV. Since the calculation of that PES is based on a spin-free Hamiltonian, the true spin–orbit energies for HBr+ in the 2Π3/2 and 2Π1/2 would correlate with barriers being approximately 0.16 eV higher or lower respectively. The experimental finding of an effective threshold around 1 eV possibly indicates that the spin orbit energy of the HBr+ is not available for the BT reaction coordinate, similar to the CT.
![]() | ||
Fig. 8 Potential energy profile of PT (a), HA (b), CT (c) and BT (d) reaction channels at CCSD(T)-F12/cc-pVDZ-PP-F12 level of theory with ZPE included. The atoms are represented as black (C), maroon (Br) and white (H). The energies in parentheses are experimental heats of reaction. The coordinates of these stationary points are given in the ESI.† |
As mentioned above the collision energy dependence of CT and BT reaction channels exhibits a characteristic difference. While σCT shows a right-curved characteristic above the threshold, well represented by the classical loc model, σBT shows a left-curved characteristic above the threshold only represented by the modified loc model. As a consequence, it is concluded that the BT reaction channel is angle-dependent in contrast to the CT reaction channel, where sterical orientation does not appear to play a role.
The potential energy profile of the hydrogen abstraction (HA) pathway is shown in Fig. 8(b), where HBr+ abstracts one hydrogen atom from CH4 to form planar CH3 radical (D3h) and H2Br+ (C2v). The vdW complex i1 (−36.16 kJ mol−1, see the PT pathway) is connected to a submerged barrier ts-1-2 (−27.58 kJ mol−1), where HBr+ (instead of just Br as seen in the PT pathway) pivots around CH4 to form i2 (−71.72 kJ mol−1). i2, stabilized by the hydrogen bond between Hc and Br, possesses a ‘staggered’ conformation where the dihedral angle of Ha–Br–C–Hb is 180°. ts-2a (−49.30 kJ mol−1) (Fig. 8(d)) is a self-isomerization transition state of i2, where CH4 tumbles, but does not lead to the products. CH4 in i2 could also rotate with respect to C–Hc–Br axis to form the ‘eclipsed’ conformer i3 (−71.57 kJ mol−1), where the dihedral angle of Ha–Br–C–Hb is 0°. The corresponding transition state of this rotation, ts-2-3 (−71.42 kJ mol−1), is well less than 1 kJ mol−1 compared to i2 and i3. The H atom in the CH4 group of i2 and i3 can transfer to Br, forming p2 without a transition state. p2 could also be formed without a transition state via vdW complexes i6 (6.24 kJ mol−1) and i7 (6.37 kJ mol−1), where the H has already transferred from CH4 to HBr, but the newly formed H2Br+ has not dissociated. i6 (‘staggered’) and i7 (‘eclipsed’) are roaming complexes formed from its corresponding H-bond complex i2 and i3, which can also isomerize to one another via transition state ts-6-7 (14.94 kJ mol−1). The C–Br distance changes from 2.92 Å (i6) → 3.21 Å (ts-6-7) → 2.92 Å (i7) in this process on a relative flat potential energy profile. The HA reaction is endothermic by 30.71 kJ mol−1.
The potential energy profile of the charge transfer (CT) pathway is shown in Fig. 8(c), where an electron is transferred from CH4 to HBr+. The CT reaction pathway is very similar to the HA pathway, except p3 is only formed via a barrierless dissociation of i2 and i3 (not i6 and i7). CH4 changes from Td point group to C2v point group after losing an electron, while the H–Br bond length decreased from 1.43 Å to 1.40 Å after gaining an electron. The CT reaction is the most endothermic (86.71 kJ mol−1) among all the reaction pathways.
The potential energy profile of the bromine transfer (BT) is shown in Fig. 8 (d), which forms CH4Br+ (Cs) and H. As noted in the method section, although the experimental heat of formation of CH4Br+ is not known to date, there is one ion-beam experiment tentatively speculating its formation.89 Theoretical investigation by Chistyakov et al.90 reported the geometries and energies of CH4Br+ as intermediates of the CH4 + Br+ → BrH + CH3+ reaction. While the level of the theory (MNDO/PM3) in Chistyakov et al. is not considered as state of the art anymore, its reported structure (Fig. 8(d)) agrees with CCSD(T)-F12/cc-pVDZ-PP-F12 geometry optimization in this study. Electron density analysis shows that the net positive charge is mostly concentrated on Br. The BT reaction pathway follows the reaction pathways of HA and CT until i6. The H2Br in i6 could recombine with CH3 and form a vdW complex, i9 (23.84 kJ mol−1), after crossing a barrier (ts-6-9) of 52.74 kJ mol−1. According to fc-MP2/cc-pVTZ-PP, several vdW complexes similar to i9 have been identified with the H atoms at different positions with respect to CH4Br+, suggesting a roaming region in the potential energy surface. However, these stationary points could not be confirmed with CCSD(T)-F12/cc-pVDZ-PP-F12 level of theory, thus they are not reported in Fig. 8. Further i9 dissociates to p4 without a transition state. The BT reaction is endothermic (25.75 kJ mol−1) with an overall barrier of 52.47 kJ mol−1 (ts-6-9).
Both frozen core and non-frozen core MP2 has been screened in this study due to our previous experiences with similar reaction systems.26,49 15 different basis sets, including 6-311G(d,p),95,96 aug-cc-pVTZ-PP,59,60,97 aug-cc-pVTZ,59,60,97 pc-1,98,99 pc-2,98,99 aug-pc-1,98,99 aug-pc-2,98,99 cc-pVDZ,59,60 cc-pVDZ-PP,59,60 cc-pVTZ,59,60 cc-pVTZ-PP,59,60 def2-SVP,100 def2-SVPD,100 def2-TZVP100 and def2-TZVPD,100 are screened. Each method/basis set attempts to identify the stationary points found by CCSD(T)-F12/cc-pVDZ-PP-F12. An appropriate method/basis set for AIMD simulation should be able to identify all stationary points in Fig. 8 and have a small root mean square deviation (RMSD) with the benchmark PES. The RMSD of a candidate method/basis set (A) is computed as:
![]() | (7) |
![]() | (8) |
fc-MP2 | RMSD (kJ mol−1) | MP2 | RMSD (kJ mol−1) |
---|---|---|---|
6-311G(d,p) | 10.7 | 6-311G(d,p) | 11.2 |
aug-cc-pVTZ | 9.9 | aug-cc-pVTZ | n/a |
aug-cc-pVTZ-PP | 10.5 | aug-cc-pVTZ-PP | n/a |
aug-pc-1 | 15.1 | aug-pc-1 | 15.1 |
aug-pc-2 | 10.3 | aug-pc-2 | 10.9 |
cc-pVDZ | 11.4 | cc-pVDZ | 11.0 |
cc-pVDZ-PP | 10.8 | cc-pVDZ-PP | 10.9 |
cc-pVTZ | 9.4 | cc-pVTZ | n/a |
cc-pVTZ-PP | 9.1 | cc-pVTZ-PP | 9.3 |
pc-1 | 15.6 | pc-1 | 16.1 |
pc-2 | 12.4 | pc-2 | 13.5 |
def2-SVP | 12.4 | def2-SVP | 13.9 |
def2-SVPD | n/a | def2-SVPD | 10.4 |
def2-TZVP | 11.2 | def2-TZVP | 13.0 |
def2-TZVPD | 11.5 | def2-TZVPD | 11.2 |
Ion–molecule collisions yield products via direct and indirect mechanism26,48,49,93,94,101–105 with their scattering angle measured according to the illustration in Fig. 10. Reactive trajectories which do not form long-lived intermediates are classified as direct reactions. Following the convention of other ion–molecule reactions, direct reactions are classified as direct rebound (DR) and direct stripping (DS), where DR is mostly observed at small impact parameters and direct stripping (DS) is mostly observed at large impact parameters. The scattering angle distribution of direct reactions of each reaction will be discussed in detail later in the manuscript. Reactive trajectories with significant lifetime of the collision complex are classified as indirect reactions, whose collision complex is long-lived (e.g., longer than the time for intramolecular vibrational energy redistribution) before dissociating into products, and as a result, yielding a near isotropic scattering angle distribution.
Snapshots of representative trajectories of different reaction mechanisms in all pathways are provided in Fig. 10. Taking the dynamics of the reaction in the case of 2.0 eV collision energy as an example, a strong correlation between the reaction pathway and the scattering angle is observed. Fig. 11 shows the scattering angle distributions for all four reaction pathways. As noted earlier, PT and HA are the predominant reactions. The PT reaction shows large scattering angles, where the product ion leaves in the opposite direction as the reactant ion, indicating the dominance of the DS mechanism (Fig. S6(b), ESI†). The DS mechanism is also the dominating mechanism for the HA reaction (Fig. S6(c), ESI†), but in this case, resulting in small scattering angle, where the product ion leaves in the same direction as the reactant ion. Overall, the dynamics of the PT and HA reactants are in accordance with what have been reported in similar ion–molecule bimolecular collisions, e.g., HBr+ + HCl and HCl+ + HCl.24,26
![]() | ||
Fig. 11 The scattering angle distribution (overall, gray; PT, green; HA, blue; BT, red; and pink, CT) from the simulation for 2.0 eV. |
CT and BT are two minor reaction pathways observed in this reaction (Fig. 9). CT reaction takes place only via direct mechanism across all impact parameters. This result is similar to what Luo et al.24 reported in the study of the HCl+ + HCl bimolecular collision, although the strong selectivity of the entrance channel complex (e.g., only those trajectories where chlorine collides with chlorine result in CT) is absent in the current system. More than 70% of the CT trajectories follow the DS mechanism (Fig. S6(a), ESI†), leading to large scattering angles. Similar to CT, all the BT products are formed via direct mechanism and the initial contact determines the reaction mechanism (Fig. 10): (1) the bridging H loss: if the hydrogen in CH4 is directly colliding onto the bromine of HBr+, it acts as a bridging atom between the C and Br, which is squeezed out immediately by these two heavy atoms to form the C–Br bond in CH4Br+. In this case, the hydrogen atom (and the accompanying CH4Br+) traverses perpendicular to the C–Br axis, resulting in a scattering angle of near 90 degrees. This is evident from the scattering angle distribution in Fig. S6(d) (ESI†). (2) the “SN2” H loss: if the CH4 is orientated in a direction that allows for the bromine to directly form a bond with carbon, the H atom of CH4 on the opposite side of the bromine will pop away. In this case, the hydrogen atom (and the accompanying CH4Br+) traverses parallel along the C–Br axis, resulting in a near 180-degree scattering angle Fig. S6(d) (ESI†). Combining the scattering angles from all reactions, the overall scattering angle of the HBr+ + CH4 is shown in Fig. 11.
The PT reaction shows a monotonically decreasing cross section with increasing collision energies implying that no significant barrier is operative on that reaction coordinate. The SO energy seems to be available to the reaction coordinate. The cross section for PT also decreases with increasing rotational energy. A similar trend was observed in earlier studies HBr+ + HBr25 and HBr+ + HCl.26 In the reaction system HBr+ + HCl the influence of the rotational energy on the PT cross section was more pronounced than that of collision energy.26 The data presented in this work exhibit the same trend.
The cross section for the endothermic hydrogen abstraction can be fitted to the simple loc model up to Ecm = 2 eV. Beyond this collision energy the cross section decreases significantly. This can be rationalized by the switching-on of competing reactions, in particular the CT and the BT channel, which is observed also in the AIMD simulations. The PES prompt similar reaction pathways for the HA and BT channels with identical transition state followed by splitting up into different pathways. In the experiment the BT pathway appears significantly enhanced at the largest collision energies employed, while the HA channel appears suppressed at the largest collision energies. This observation comes along with the finding that the BT channel is the only channel exhibiting a quadratic increase of the cross section with increasing Ecm, which can be modelled by the modified loc model suggesting an angle-dependence of the reaction, which is in line with the simulation results qualitatively.
In contrast, the cross section for CT can be fitted by the simple loc model which implies no angle dependence. The thermochemical threshold for the CT reaction pathway, as obtained from the calculated PES, is higher than the corresponding activation barrier of the BT reaction. This observation is consistent with experimental results, which also indicate a lower threshold for the BT reaction channel.
The cross sections for BT as well as CT are basically independent of the rotational energy of the ion, the cross section for HA has only a minor dependence on the ion rotation. In contrast, the cross section for PT markedly decreases with rotational energy of the ion, at least for the smallest Ecm investigated. To be effective, the PT channel requires the hydrogen atom pointing in the direction of the CH4. A higher rotational velocity will likely disfavor the passage through the transition state geometry.
For the HA and the CT reaction orientational requirements do not appear to pose a major restriction to the efficiency of those reaction channels. Consequently, the cross sections appear less affected by the rotational motion. However, the BT channel requires the Br atom of HBr+ ion oriented towards CH4 for the reaction to proceed.
Finally, the threshold for the respective reaction channels suggests that the spin–orbit energy of HBr+ employed in the experiment may not automatically be available to the reaction. The SO energy in the HBr+ ion appears to be available for the reaction for the PT and the HA channel, but not for the CT channel. We note, that earlier studies by Paetow et al. clearly showed that the spin orbit energy of the X2Π1/2 state is also available for the PT reaction in HBr+ + CO2.27,106
It is of interest to note the behavior of the cross section of the PT reaction in AIMD simulations, which is slightly endothermic (5.08 kJ mol−1) and has a non-negligible barrier (20.74 kJ mol−1). Normally one would expect its cross section to increase as the collision energy increases but the simulation shows that the cross section decreases monotonically from 0.5 eV to 3.0 eV. We currently do not have a thorough explanation to this phenomenon, but we note the previous statement relies on maintaining a statistical ensemble that follows the intrinsic reaction coordinate. In the current system, the excess energy overwhelms the barrier and the heat of the reaction – the lowest collision energy simulated is 48.24 kJ mol−1 (0.5 eV). As a result, 47% percent of PT and 7% of HA trajectories are direct, as they simply glide over the intermediates and barrier reported in the potential energy profile (Fig. 8) and directly form the product (cf. Table 7). The ratio of direct reaction increases to over 90% when the collision energy is 289.44 kJ mol−1 (3.0 eV). In these cases, an increase in the collision energy results in the reactants having even less time to interact with each other, thus the reaction probability decreases. A thought experiment can be laid out to make the point – even for an exothermic reaction, if the collision energy is infinite, the molecules would simply be passing through each other and no reaction can be observed. We note, that a similar observation has been arrived at with the HBr+ + CO2 reaction system.49 Considering a well-benchmarked ML potential has been developed in this work, more AIMD simulations below 0.5 eV will be conducted to verify the impact of the collision energy when it is below the barrier of the reaction and detect the turning point after which the cross section decreases with the increase of collision energy.
Collision energy (eV) | Direct PT trajectories | Direct HA trajectories |
---|---|---|
0.5 | 47% | 7% |
2.0 | 84% | 77% |
3.0 | 87% | 91% |
The agreement between the simulations and experiments is qualitative, as shown in Fig. 9. The disagreement can be attributed to the lack of SO-coupling effect in the simulations and the differences between the SO-free PES used in the simulation and the true SO-free PES. However, it is important to realize that (1) the true SO-free PES is not accessible except for the heat of the reaction and (2) the PES for the simulations is selected from the benchmark, which only mimics the true PES. As shown in Table 6, there is a finite difference between the PES of the simulation and the benchmark thus only qualitative agreement can be expected. Nonetheless, it is our opinion that the level of agreement reported in this manuscript is better than other AIMD simulations of similar reactions, where only the trend of the cross section (e.g., normalized cross section) vs. collision energy is compared to the experiment.24,26,49,107,108 In other cases where the absolute cross sections are reported, they are off by one order of magnitude from the experiment.109,110 In particular there is almost quantitative agreement between the experimental and AIMD calculated cross sections for the dominating PT channel. The fact that both are lower by a factor of 3 compared to Langevin theory consistently indicates that on the average every third collision is reactive.
The cross section of the PT reaction decreases with increasing collision energy as expected but steeper than predicted by the Langevin model. The monotonic decrease of σPT suggests that no effective barrier is operative in the PT reaction. σPT decreases with increasing rotational energy.
The HA cross section exhibits a maximum at 2 eV collision energy and decreases beyond this to the primal cross section value. The HA cross section is independent of the ion rotation with the exception at the point of similar angular speed of the reactants, where there is a maximum.
The CT reaction exhibits characteristics of a typical endothermic reaction. Experimentally the thermodynamic threshold was determined to be 0.95 ± 0.03 eV.
The cross section of the BT reaction fit quite well with a modified loc model, suggesting an angle-dependence to be operative. In contrast no angle-dependence appears operative for the CT reaction. For both reaction channels the cross sections are independent of the ion rotational motion in the range of collision energies investigated.
A machine learning potential for the title reaction system has been devised, which allowed the successful rationalization of experimentally measured cross sections as well as prediction of mechanistic aspects not directly accessible to the experiment.
Footnotes |
† Electronic supplementary information (ESI) available. See DOI: https://doi.org/10.1039/d4cp01121j |
‡ Contributed equally to this work. |
This journal is © the Owner Societies 2024 |