Leandro
Ayarde-Henríquez
*ab,
Jacopo
Lupi
ab and
Stephen
Dooley
*ab
aSchool of Physics, Trinity College Dublin, Dublin 2, Ireland. E-mail: leandro.ayarde@tcd.ie; stephen.dooley@tcd.ie
bAMBER, Advanced Materials and BioEngineering Research Centre, Dublin 2, Ireland
First published on 4th April 2024
This work analyzes the thermochemical kinetic influence of the most prominent functionalizations of the β-D-xylopyranose motif, specifically 4-methoxy, 5-carboxyl, and 2-O-acetyl, regarding the pyrolytic depolymerization mechanism. The gas-phase potential energy surface of the initial unimolecular decomposition reactions is computed with M06-2X/6-311++G(d,p), following which energies are refined using the G4 and CBS-QB3 composite methods. Rate constants are computed using the transition state theory. The energies are integrated within the atomization method to assess for the first time the standard enthalpy of formation of β-D-xylopyranose, 4-methoxy-5-carboxy-β-D-xylopyranose, and 2-O-acetyl-β-D-xylopyranose: −218.2, −263.1, and −300.0 kcal mol−1, respectively. For all isomers, the activation enthalpies of ring-opening are considerably lower, 43.8–47.5 kcal mol−1, than the ring-contraction and elimination processes, which show higher values ranging from 61.0–81.1 kcal mol−1. The functional groups exert a notable influence, lowering the barrier of discrete elementary reactions by 1.9–8.3 kcal mol−1, increasing thus the reaction rate constant by 0–4 orders of magnitude relative to unsubstituted species. Regardless of the functionalization, the ring-opening process appears to be the most kinetically favored, characterized by a rate constant on the order 101 s−1, exceeding significantly the values associated with ring-contraction and elimination, which fall in the range 10−4–10−10 s−1. This analysis shows the decomposition kinetics are contingent on the functionalization specificities and the relative orientation of reacting centers. A relatively simple chemical reactivity and bonding analysis partially support the elaborated thermokinetic approach. These insights hold significance as they imply that many alternative decomposition routes can be quickly, yet accurately, informed in forthcoming explorations of potential energy surfaces of diverse hemicellulose motifs under pyrolysis conditions.
The degradation of biomass to valuable chemicals and fuels through thermochemical processes, such as pyrolysis, gasification, hydrothermal liquefaction, and others, has captured the attention of the Industry, Government, and Academia.3,4,6,16 Among all methods for degrading biomass, the so-called fast pyrolysis (FP) is considered the most attractive.1,17,18 Under FP conditions, biomass is thermally decomposed (≈400–600 °C, ≈103 °C) under an inert atmosphere, i.e., without oxygen.1,19,20 Fast pyrolysis is regarded as a leading technology due to its technical and economic performance. In the context of the FP regime, it is essential to note that cellulose, hemicellulose, and lignin bio-oil yields exhibit characteristic values of approximately 70, 60, and 40%, respectively. However, these values are notably sensitive to variations in temperature. This means that an increase or drop in the temperature will cause the system to deviate from these thermal operation conditions, thus impacting these yields.21,22 Currently, the bio-oil produced falls short in quality and cost-effectiveness compared to its petroleum-derived crude oil counterparts. This discrepancy is primarily attributed to several issues that must be surmounted before the commercial-scale utilization of bio-products can be achieved:1,4,5,17,23 (i) the chemical structural complexity and high variability of main biomass components, (ii) challenges posed by the scale and multiscale problems, (iii) the imperative development of effective technologies for characterizing biomass products, and (iv) the pressing need for accurate and unified kinetic models to predict the type and relative abundance of bioproducts. From our perspective, it is crucial to conduct systematic theoretical studies that account for the influence of both metals and substituents due to the current experimental limitations. This rigorous approach is needed for elucidating fundamental molecular physical knowledge underpinning the thermal depolymerization of biomass, facilitating the transition towards a bio-based and circular economy.
Recently, our research group has been actively immersed in developing a detailed kinetic model for the pyrolysis of hemicellulose and lignin. This model is poised for further refinement through the Machine Learned Optimization of Chemical Kinetics (MLOCK) coded algorithm.24 MLOCK optimizes kinetic models to target data (e.g., experimental measurements) through the generation and evaluation of sets of solutions by simultaneous perturbation of Arrhenius parameters. Machine learning and data-analysis techniques are employed to direct the search algorithm toward the ideal set of solutions that results in a kinetic model of high fidelity to the optimization targets. Furthermore, it is well known that a minor content of minerals is present within the plant tissues in the form of cations, oxides, salts, phosphates, and sulfates.1,17 This inorganic material encompasses a variety of minerals such as potassium (K), magnesium (Mg), sodium (Na), calcium (Ca), cobalt (Co), and copper (Cu).1,17 These elements significantly impact the depolymerization processes, although the content is typically low, ranging from 2–25% of the total mass.1 In addition, the presence of O-acetyl groups in hard and soft wood hemicellulose is well-documented.25–27 The precise positions of such groups, C2 and/or C3, were determined by combining nuclear magnetic resonance (NMR), thermogravimetric analysis (TGA), and chemical analysis. Separate experimental investigations have successfully isolated 4-methoxy-5-carboxy-β-D-xylopyranose (henceforth referred to as 4-O-methyl-D-glucuronic acid) from different hemicellulose plant sources.28,29
It should be emphasized that considerable research efforts have been dedicated to investigating the thermal degradation mechanism of cellulose, leading to comparatively fewer studies on the other two primary biomass components.27 In the existing literature, investigations addressing the depolymerization impact of substituents on the thermokinetic features of pyrolytic processes are scarce. Wang and co-workers30 identified some products resulting from the breakage of O-acetyl groups and 4-O-methyl-D-glucuronic acid units from xylan by combining thermogravimetric and Fourier-transform infrared spectroscopy techniques. Huang et al.31 proposed some pyrolytic reaction pathways for products of 2-O-acetyl-β-D-xylopyranose (hereafter termed 2-O-acetyl-xylose). However, to the best of our knowledge, there is a conspicuous absence of prior studies concerning the systematic assessment of the influence of functional groups on hemicellulose depolymerization, even though some studies show that the amount of O-acetyl groups could significantly impact the product yields and condition bio-oils acidity.18,32–34 Consequently, this work aims to discuss to what extent functional groups affect the pyrolytic degradation of the hemicellulose motif, β-D-xylopyranose (hereafter referred to as xylose), from both thermodynamic and kinetic viewpoints. Subsequent systematic studies will address other biomass components (e.g., lignin), the organic–inorganic interaction, and the transferring of all these insights to our kinetic model.
The manuscript is organized as follows: first, the computational methods employed are outlined. Subsequent sections discuss the thermochemical and kinetics results for the initial pyrolysis steps of xylose, 2-O-acetyl-xylose, and 4-O-methyl-D-glucuronic acid. Additionally, the insights derived from the analysis of electron-density-based descriptors are discussed. The last section summarizes the main findings and delineates potential directions for future research.
Conformational analysis for critical species (e.g., minima and TSs) along the IRC was conducted using the CREST program.39 This software combines semiempirical tight-binding methods with meta-dynamics to generate conformers thermodynamic ensembles within a relatively narrow energy window of 4.87 kcal mol−1. This set of structures was further optimized at the M06-2X/6-311++G(d,p) level and compared with those observed in scattering experiments to ensure the study of the correct enantiomer.
In order to obtain accurate thermochemistry values at both absolute zero and 298 K, composite model chemistry methods such as the complete basis set (CBS)40,41 and Gaussian-4 (G4)42 were employed. In these approaches, geometry optimizations and frequency calculations are performed using relatively simple and cost-effective methods, adding higher levels of theory in a stepwise manner.
Calculations of thermodynamic properties such as the Gibbs free energy (ΔG) and heat capacities (Cp and Cv) at various temperatures were conducted in the rigid-rotor harmonic oscillator (RRHO) approximation using the Shermo 2.3.5 suite.43 This is a pretty flexible code that allows the explicit consideration of scaling factors of vibrational frequencies for several quantities, including the zero-point vibrational energy (ZPE), for determining thermochemical values and automatically treating the low frequencies via Grimme's44 entropy interpolation between harmonic and free-rotor approximations on an ideal gas behavior assumption. It is worth mentioning that Lu and Chen43 showed that applying quasi-RRHO (QRRHO) schemes for treating hindered internal rotors in relatively flexible molecules moderately impacts entropy (S). Based on harmonic approximation, the Cp is computed as follows:
![]() | (1) |
The standard enthalpy of formation, ΔH0f at 298 K, of chemical species was computed using Rogers et al.'s methodology.45 This procedure combines experimental46,47 and computed thermochemistry data to accurately derive the values of ΔH0f by using the reaction enthalpy, ΔH0r, as a proxy. Let us exemplify this algorithm by considering the formation of one molecule of water from its constituents (atoms) in their standard state:
![]() | (2) |
The rate constant, k(T), of each elementary step is determined through canonical transition state theory (TST):
![]() | (3) |
![]() | (4) |
The chemical reactivity assessment was conducted by calculating the electronic chemical potential, μ,49 and Fukui's functions (f+, f−, and f0).50 The parameter μ measures the global tendency of electrons to escape from a ground-state system.49,51 Conversely, the f indices describe the local response of the molecule to nucleophilic (f+), electrophilic (f−), and neutral/radical (f0) attacks.50,52–54 Additionally, the bonding analysis was performed using the electron localization function (ELF).55,56 ELF is frequently interpreted as a local measure of electrons’ kinetic energy excess due to Pauli's exclusion principle;57,58 thus, high values of this function (>0.5) correspond to a spatial position with high electron localization.59,60 The nullity condition applied to the ELF gradient yields a partition of the molecular space into basins of attractors, empirically associated with Lewis’ bonding elements, including valence bonds, lone pairs, and atomic cores.61–63 The numerical computation of the chemical reactivity and bonding analysis was carried out using the Multiwfn packages.64
![]() | ||
Scheme 2 Lewis-like structures illustrating a simple kinetic model comprising key initial depolymerization reactions65 of xylose (panel a). Functionalized chemical species 2-O-acetyl-xylose (panel b) and 4-O-methyl-D-glucuronic acid (panel c) undergo the same reactions to systematically assess the influence of substituents. For all systems, the ring-opening process comprises the C1–O bond cleavage leading to an acyclic form, the ring-contraction involves the transformation of the pyran ring to a five-membered ring, and anhydroxylopyranose forms through elimination. |
Table 1 shows the relative enthalpy of activation, ΔH‡, at both 0 and 298 K of substituted and unsubstituted species concerning the ring opening/contraction and elimination processes at three levels of theory: M06-2X/6-311++G(d,p), CBS-QB3, and G4. The performance of G4, the highest level, in predicting activation barriers has been extensively documented for reacting systems in the gas phase. Curtiss and co-workers66 reported a mean unsigned deviation of 1.36 kcal mol−1 between predicted and experimentally derived barriers (both forward and reverse) across thirty-eight hydrogen and non-hydrogen transfer reactions. Sun and McKee67 investigated the initial steps of diborane pyrolysis, noting a deviation of 0.35 kcal mol−1 in the activation energy from experimental values regarding both uni- and bi-molecular paths. Additionally, Houk and collaborators68 computed barriers for 1,3-dipolar cycloadditions of ozone with low-molecular-weight hydrocarbons, demonstrating good agreement with the referential level CCSD(T)/aug-cc-pVXZ//CCSD(T)/cc-pVTZ, where X = T, Q, 5. Using reliable data, Karton and Goerigk69 benchmarked twenty-six pericyclic reactions, including electrocyclic, sigmatropic shift, cycloreversion, and cycloaddition subclasses, reporting a mean absolute deviation equal to 0.6 kcal mol−1. These studies evidence the suitability of G4 in generating accurate thermodynamic properties, particularly activation enthalpies.
Elementary reaction | T = 0 K | T = 298 K | ||||
---|---|---|---|---|---|---|
ΔH‡DFT | ΔH‡CBS | ΔH‡G4 | ΔH‡DFT | ΔH‡CBS | ΔH‡G4 | |
DFT stands for M06-2X/6-311++G(d,p).CBS stands for CBS-QB3.a Indicates relaxed convergence criteria. | ||||||
Xylose → D-xylose | 49.68 | 38.19 | 45.55 | 45.54 | 37.30 | 45.54 |
Xylose → FF1 + H2O | 76.21 | 71.20a | 71.41 | 72.84 | 71.30a | 71.47 |
Xylose → FF2 + H2O | 73.19 | 57.55 | 65.07 | 70.25 | 56.68 | 65.09 |
Xylose → AXP1 + H2O | 75.55 | 62.02 | 69.11 | 70.56 | 61.64 | 69.65 |
Xylose → AXP2 + H2O | 87.20 | 73.70 | 80.73 | 82.00 | 73.27 | 81.08 |
Xylose → AXP3 + H2O | 79.73 | 66.27 | 73.49 | 74.55 | 65.69 | 73.76 |
Xylose → AXP4 + H2O | 81.45 | 67.78 | 74.86 | 76.08 | 67.40 | 75.20 |
Xylose → AXP5 + H2O | 80.08 | 66.41 | 74.05 | 74.78 | 65.96 | 74.39 |
Xylose → AXP6 + H2O | 81.68 | 67.01 | 74.38 | 76.07 | 66.46 | 74.85 |
Xylose → AXP7 + H2O | 77.19 | 64.26 | 71.49 | 71.81 | 63.48 | 71.56 |
2-O-Acetyl-xylose → OADXP | 46.56 | 43.99 | 43.91 | 42.65 | 43.89 | 43.79 |
2-O-Acetyl-xylose → FFL1 + CH3COOH | — | — | — | — | — | — |
2-O-Acetyl-xylose → FFL2 + CH3COOH | 71.64a | 65.49 | 65.27 | 68.44a | 65.61 | 65.35 |
2-O-Acetyl-xylose → AXPL1 + H2O | 70.71 | 68.04 | 67.72 | 66.07 | 68.33 | 67.94 |
2-O-Acetyl-xylose → AXPL2 + CH3COOH | 79.37 | 73.76 | 73.28 | 74.39 | 74.32 | 73.80 |
2-O-Acetyl-xylose → AXPL3 + CH3COOH | 70.94 | 65.25 | 65.14 | 65.77 | 65.55 | 65.43 |
2-O-Acetyl-xylose → AXPL4 + H2O | 75.77 | 72.43 | 71.94 | 70.84 | 72.72 | 72.19 |
2-O-Acetyl-xylose → AXPL5 + H2O | 77.76 | 71.49 | 71.32 | 72.57 | 71.63 | 71.43 |
2-O-Acetyl-xylose → AXPL6 + H2O | 76.33 | 73.10 | 72.38 | 71.16 | 73.58 | 72.79 |
2-O-Acetyl-xylose → AXPL7 + H2O | 75.25 | 70.38 | 69.78 | 69.60 | 70.49 | 69.87 |
4-O-Methyl-D-glucuronic acid → DGLA | 51.87 | 47.77 | 47.66 | 47.36 | 47.76 | 47.62 |
4-O-Methyl-D-glucuronic acid → FFL1 + H2O | 82.85 | 76.77a | 76.70a | 79.21 | 77.02a | 76.99a |
4-O-Methyl-D-glucuronic acid → FFL2 + H2O | 67.34 | 60.91 | 61.01 | 64.66 | 60.94 | 61.03 |
4-O-Methyl-D-glucuronic acid → AXPL1 + H2O | 75.64 | 70.19 | 68.79 | 70.49 | 70.62 | 69.27 |
4-O-Methyl-D-glucuronic acid → AXPL2 + H2O | 85.70 | 75.67 | 75.28 | 81.37 | 75.53 | 75.10 |
4-O-Methyl-D-glucuronic acid → AXPL3 + H2O | 80.77 | 74.82 | 74.29 | 75.62 | 75.19 | 74.60 |
4-O-Methyl-D-glucuronic acid → AXPL4 + H2O | 73.24 | 69.40 | 68.89 | 68.71 | 69.38 | 68.78 |
4-O-Methyl-D-glucuronic acid → AXPL5 + H2O | 78.65 | 73.87 | 73.51 | 73.68 | 74.23 | 73.84 |
4-O-Methyl-D-glucuronic acid → AXPL6 + CH3OH | 79.67 | 72.23 | 72.28 | 74.73 | 72.85 | 72.92 |
4-O-Methyl-D-glucuronic acid → AXPL7 + CH3OH | 66.35 | 63.95 | 63.53 | 62.58 | 64.08 | 63.70 |
It is worth noting that the transition states (TSs) of reactions comprising the conversion from the pyran to FF configuration, TS-FFL1, failed to converge for 2-O-acetyl-xylose at the DFT level regardless of utilizing Gaussian 16 algorithms such as synchronous transit-guided quasi-Newton (STQN) and scan. Attempts to explore the PES using the nudged elastic band (NEB) and NEB-TS algorithms implemented in ORCA 5.070 proved unsuccessful in providing a reliable guess for this TS. In this context, the TS-FFL2 was finally located upon relaxing the convergence criteria by adjusting the Gaussian ConvF threshold, i.e., ConvF = N × 10−6, where N = 3.0 × 105. This approach was also adopted for xylose (CBS-QB3) and 4-O-methyl-D-glucuronic acid (CBS-QB3 and G4), using N = 1.2 × 104 and N = 3.0 × 105, respectively. These values have been indicated by an asterisk (see Table 1) and are excluded from our analysis.
Interestingly, the barrier description provided by G4 and CBS-QB3 differs substantially across functionalized and unfunctionalized species. This proves fundamental differences in the state-of-the-art levels of theory integrated within these composite models, particularly in their capabilities to describe correlation effects. The electronic energy accuracy provided by CCSD(T) and QCSD(T) plays a significant role in this discrepancy. In the case of the single-functionalized species, CBS-QB3 yields a significant difference of for most steps relative to the simplest system. Contrary to the results obtained with G4. This Gaussian-family method reveals that the presence of the O-acetyl group at C2 significantly lowers the activation enthalpy (≈7–8 kcal mol−1) of processes directly involving the substituent, specifically TS-AXPL2 and TS-AXPL3. Similarly, this trend is observed when comparing xylose and 4-O-methyl-D-glucuronic acid results, as evidenced by the relatively high difference in ΔH‡ for the elimination comprising the methoxy group (undergone via TS-AXPL7). This is expected for TSs involving such a group; however, we found other dehydrations where ΔH‡ > 5 kcal mol−1 at the G4 level, exemplified by the reactions associated with TS-AXPL2 and TS-AXPL4. Therefore, conducting an in-depth examination of the steric and regioselectivity effects is pertinent to elucidate the underlying mechanisms influencing the apparent favorable direction.
The standard enthalpy of formation, ΔH0f(298 K), of atoms and molecules is an essential thermodynamic quantity in the analysis of gas-phase processes employing detailed kinetic models. This quantity is determined through different methodologies, including isodesmotic71,72 and connectivity-based hierarchy (CBH)44,73 schemes. In our study, we determined ΔH0f(298 K) for reactants and products resulting from the initial elementary steps through the atomization scheme outlined by Rogers and collaborators.45 This procedure combines experimental46,47 and atomization thermochemistry data generated via computational algorithms to calculate ΔH0f by considering the reaction enthalpy of various isodesmic74 and homodesmotic74 reactions. Although less prone to error cancellations, the atomization approach was adopted due to its easy applicability and reasonable accuracy.45,75 The evaluation of water, methanol, and acetic acid (AA) in the gas phase reveals discrepancies not surpassing 0.50 kcal mol−1 between the experimental and computed values when corrections for spin–orbit couplings (SOC)76,77 of carbon and oxygen atoms are integrated a posteriori within the atomization scheme to fine-tune ΔH0f, as presented in Table 2. Notably, the absolute error decreases by 0.16, 0.20, and 0.50 kcal mol−1 for the corresponding species when such a correction is considered; these values are presented in parentheses in Table 2. This trend indicates the potential significant influence of SOC effects on the accuracy of the predicted ΔH0f, particularly for moieties characterized by a relatively high molecular weight.
Species | ΔH0f | Formula | Species | ΔH0f | Formula | Species | ΔH0f | Formula |
---|---|---|---|---|---|---|---|---|
a The experimental value is equal to (−57.80 ± 0.02) kcal mol−1. See Ruscic et al.46 b The experimental value is equal to (−103.41 ± 0.36) kcal mol−1. See Ruscic et al.46 c The experimental value is equal to (−48.07 ± 0.15) kcal mol−1. See Ruscic et al.46 | ||||||||
Xylose | −218.15 (−216.91) | C5H10O5 | 2-O-Acetyl-xylose | −263.08 (−261.51) | C7H12O6 | 4OMGLA | −299.99 (−298.26) | C7H12O7 |
DXP | −209.65 (−208.41) | C5H10O5 | OADXP | −253.62 (−252.05) | C7H12O6 | DGLA | −291.27 (−289.54) | C7H12O7 |
FF1 | −145.27 (−144.20) | C5H8O4 | FFL1 | −145.28 (−144.20) | C5H8O4 | FFL1 | −229.11 (−227.55) | C7H10O6 |
FF2 | −145.96 (−144.88) | C5H8O4 | FFL2 | −146.06 (−144.99) | C5H8O4 | FFL2 | −230.49 (−228.92) | C7H10O6 |
AXP1 | −145.78 (−144.71) | C5H8O4 | AXPL1 | −189.18 (−187.77) | C7H10O5 | AXPL1 | −226.61 (−225.05) | C6H8O6 |
AXP2 | −152.76 (−151.69) | C5H8O4 | AXPL2 | −152.77 (−151.69) | C7H10O5 | AXPL2 | −232.26 (−230.69) | C6H8O6 |
AXP3 | −150.87 (−149.80) | C5H8O4 | AXPL3 | −148.49 (−147.41) | C7H10O5 | AXPL3 | −233.14 (−231.57) | C7H10O6 |
AXP4 | −149.52 (−148.44) | C5H8O4 | AXPL4 | −190.48 (−189.08) | C7H10O5 | AXPL4 | −228.63 (−227.07) | C7H10O6 |
AXP5 | −152.56 (−151.49) | C5H8O4 | AXPL5 | −199.94 (−198.54) | C5H8O4 | AXPL5 | −233.80 (−232.23) | C7H10O6 |
AXP6 | −150.47 (−149.40) | C5H8O4 | AXPL6 | −200.34 (−198.93) | C5H8O4 | AXPL6 | −238.97 (−237.49) | C7H10O6 |
AXP7 | −149.79 (−148.72) | C5H8O4 | AXPL7 | −202.59 (−201.19) | C7H10O5 | AXPL7 | −237.89 (−236.41) | C7H10O6 |
H2O | −57.46a (−57.30) | H2O | AA | −102.95b (−102.46) | C2H4O2 | Methanol | −48.12c (−47.87) | CH4O |
The heat capacity of materials is a relevant quantity in thermodynamics, aiding in the precise calculation of thermal requirements and optimal processing temperatures. Furthermore, it serves as a discriminative parameter in distinguishing between two distinct polymeric composites based on their thermal characteristics.78 In this context, the heat capacities at constant volume (Cv) and pressure (Cp), as well as the entropy, were computed for all the species in the gas phase. The low values of Cp increase with rising temperatures for all species. As anticipated, the pyran-ring structures have lower values than their corresponding acyclic form since the latter molecular configuration is less rigid, which favors the contribution of additional vibrational degrees of freedom. The influence of functional groups is evident since larger structures, in terms of the number of atoms, are characterized by higher Cp. For instance, at 200 K and 1.0 atm, the heat capacity of 2-O-acetyl-xylose and 4-O-methyl-D-gluguronic acid are 22.9 and 27.7% higher, respectively, than that of xylose. Such percentages slightly decrease as the absolute temperature increases.
At a temperature of 381.20 K and under 1.0 atm of pressure, calorimetric experiments conducted by McCullough and co-workers79 give a value of 0.0088 kcal mol−1 K−1 for the water vapor, characterized by an expected uncertainty not greater than ±0.2%. Notably, our calculations yield 0.0082 kcal mol−1 K−1 at 400 K, showing a close agreement with the experimental data. However, they applied statistical procedures to compensate for deviations driven by gas imperfections since the apparent heat capacity decreased as the temperature increased. This observation contrasts with our computational findings, which do not display such a trend, as evidenced in Table 3.
Species | T/K 200 | 300 | 400 | 500 | 600 | 700 | 800 | 900 | 1000 |
---|---|---|---|---|---|---|---|---|---|
The experiment-derived values of water, acetic acid, and methanol are provided in round brackets. See Stull et al.80 | |||||||||
Xylose | 0.02935 | 0.04030 | 0.05075 | 0.05989 | 0.06740 | 0.07349 | 0.07851 | 0.08270 | 0.08626 |
DXP | 0.03244 | 0.04277 | 0.05263 | 0.06126 | 0.06839 | 0.07421 | 0.07904 | 0.08310 | 0.08657 |
FF1 | 0.02567 | 0.03435 | 0.04308 | 0.05081 | 0.05721 | 0.06245 | 0.06677 | 0.07038 | 0.07345 |
FF2 | 0.02591 | 0.03446 | 0.04312 | 0.05082 | 0.05722 | 0.06245 | 0.06678 | 0.07040 | 0.07346 |
AXP1 | 0.02544 | 0.03494 | 0.04385 | 0.05153 | 0.05780 | 0.06287 | 0.06704 | 0.07053 | 0.07348 |
AXP2 | 0.02539 | 0.03492 | 0.04389 | 0.05160 | 0.05787 | 0.06294 | 0.06709 | 0.07057 | 0.07351 |
AXP3 | 0.02481 | 0.03445 | 0.04352 | 0.05130 | 0.05763 | 0.06276 | 0.06696 | 0.07047 | 0.07345 |
AXP4 | 0.02507 | 0.03464 | 0.04364 | 0.05137 | 0.05768 | 0.06280 | 0.06699 | 0.07050 | 0.07346 |
AXP5 | 0.02495 | 0.03463 | 0.04365 | 0.05139 | 0.05770 | 0.06281 | 0.06701 | 0.07051 | 0.07348 |
AXP6 | 0.02531 | 0.03481 | 0.04376 | 0.05146 | 0.05776 | 0.06286 | 0.06705 | 0.07054 | 0.07351 |
AXP7 | 0.02526 | 0.03480 | 0.04385 | 0.05161 | 0.05792 | 0.06300 | 0.06716 | 0.07063 | 0.07357 |
H2O | 0.00795 | 0.00800 | 0.00816 | 0.00839 | 0.00864 | 0.00890 | 0.00916 | 0.00943 | 0.00969 |
(0.00803) | (0.00819) | (0.00842) | (0.00868) | (0.00895) | (0.00925) | (0.00955) | (0.00985) | ||
2-O-Acetyl-xylose | 0.03806 | 0.05136 | 0.06441 | 0.07588 | 0.08534 | 0.09305 | 0.09942 | 0.10475 | 0.10927 |
OADXP | 0.04135 | 0.05416 | 0.06649 | 0.07735 | 0.08639 | 0.09383 | 0.10001 | 0.10522 | 0.10966 |
FFL1 | 0.02556 | 0.03428 | 0.04303 | 0.05078 | 0.05719 | 0.06243 | 0.06676 | 0.07038 | 0.07344 |
FFL2 | 0.02578 | 0.03441 | 0.04314 | 0.05088 | 0.05727 | 0.06250 | 0.06681 | 0.07042 | 0.07348 |
AXPL1 | 0.03416 | 0.04604 | 0.05748 | 0.06746 | 0.07569 | 0.08241 | 0.08796 | 0.09261 | 0.09654 |
AXPL2 | 0.02537 | 0.03491 | 0.04389 | 0.05159 | 0.05787 | 0.06294 | 0.06710 | 0.07057 | 0.07351 |
AXPL3 | 0.02469 | 0.03442 | 0.04358 | 0.05139 | 0.05772 | 0.06283 | 0.06701 | 0.07050 | 0.07345 |
AXPL4 | 0.03437 | 0.04607 | 0.05747 | 0.06745 | 0.07568 | 0.08242 | 0.08797 | 0.09262 | 0.09656 |
AXPL5 | 0.03388 | 0.04578 | 0.05732 | 0.06736 | 0.07562 | 0.08235 | 0.08791 | 0.09256 | 0.09650 |
AXPL6 | 0.03345 | 0.04548 | 0.05713 | 0.06723 | 0.07552 | 0.08229 | 0.08786 | 0.09252 | 0.09646 |
AXPL7 | 0.03257 | 0.04490 | 0.05683 | 0.06711 | 0.07549 | 0.08228 | 0.08786 | 0.09251 | 0.09644 |
AA | 0.01268 | 0.01625 | 0.01977 | 0.02286 | 0.02546 | 0.02763 | 0.02946 | 0.03103 | 0.03239 |
(0.01597) | (0.01952) | (0.02260) | (0.02515) | (0.02735) | (0.02908) | (0.03060) | (0.03199) | ||
4OMGLA | 0.04061 | 0.05469 | 0.06822 | 0.08008 | 0.08986 | 0.09783 | 0.10439 | 0.10987 | 0.11450 |
DGLA | 0.04207 | 0.05623 | 0.06953 | 0.08107 | 0.09059 | 0.09837 | 0.10480 | 0.11019 | 0.11477 |
FFL1 | 0.03624 | 0.04838 | 0.06033 | 0.07085 | 0.07957 | 0.08671 | 0.09259 | 0.09750 | 0.10165 |
FFL2 | 0.03648 | 0.04849 | 0.06037 | 0.07086 | 0.07958 | 0.08671 | 0.09260 | 0.09752 | 0.10167 |
AXPL1 | 0.03629 | 0.04916 | 0.06124 | 0.07167 | 0.08023 | 0.08719 | 0.09291 | 0.09768 | 0.10171 |
AXPL2 | 0.03645 | 0.04930 | 0.06141 | 0.07185 | 0.08039 | 0.08733 | 0.09303 | 0.09778 | 0.10179 |
AXPL3 | 0.03556 | 0.04855 | 0.06081 | 0.07137 | 0.08001 | 0.08703 | 0.09279 | 0.09760 | 0.10165 |
AXPL4 | 0.03662 | 0.04928 | 0.06130 | 0.07172 | 0.08028 | 0.08724 | 0.09297 | 0.09774 | 0.10177 |
AXPL5 | 0.03580 | 0.04882 | 0.06102 | 0.07153 | 0.08014 | 0.08713 | 0.09286 | 0.09765 | 0.10168 |
AXPL6 | 0.03234 | 0.04440 | 0.05525 | 0.06432 | 0.07159 | 0.07740 | 0.08212 | 0.08601 | 0.08929 |
AXPL7 | 0.03308 | 0.04491 | 0.05559 | 0.06456 | 0.07177 | 0.07754 | 0.08221 | 0.08608 | 0.08934 |
Methanol | 0.00946 | 0.01079 | 0.01270 | 0.01470 | 0.01653 | 0.01815 | 0.01956 | 0.02081 | 0.02191 |
(0.01052) | (0.01229) | (0.01422) | (0.01602) | (0.01762) | (0.01904) | (0.02029) | (0.02138) |
In a separate study, Stull and collaborators80 compiled a thermochemical dataset spanning over several decades, comprising 741 pure organic compounds in the gas phase. This type of collection of experimental values was previously obtained by combining thermal and spectroscopic direct measurements. For water, the computed Cp in the range of 300 to 1000 K deviates by 1.6% at most from the corresponding experimental value. Furthermore, this remarkable trend is also observed for acetic acid (AA) and methanol; see Table 3.
Goldberg and collaborators81 performed rigorous combustion calorimetric measurements on the crystalline alpha anomer of xylose, specifically α-D-xylopyranose. Their investigation covered a wide temperature range from 1.9 to 305 K and used an isoperibol static bomb calorimeter. They reported an experimental value equal to Cp = (0.04254 ± 0.00180) kcal mol−1 K−1 at 298.15 K, which deviates 3.21% from other measures obtained through similar experimental setups.82,83 Surprisingly, the Cp provided by Goldberg closely approximates the computed one for the beta isomer in the gas phase at 300 K. In contrast, the Cp = (0.06716 ± 0.002) kcal mol−1 K−1 of the α configuration in the aqueous phase at 303 K found by Kawaizumi et al.83 is about 60% higher. Additional details concerning computed values of Cv and S for all species in the gas phase can be found in the ESI.†
Reactive potential energy surfaces of the three investigated systems are reported in Fig. 1.
Reaction | T/K 400 | 500 | 600 | 700 | 800 | 900 | 1000 |
---|---|---|---|---|---|---|---|
Xylose | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
D-Xylose | 2.01 | 1.49 | 0.99 | 0.49 | 0.01 | −0.45 | −0.90 |
FF1 + H2O | −1.72 | −5.80 | −9.84 | −13.84 | −17.79 | −21.70 | −25.56 |
FF2 + H2O | −2.71 | −6.82 | −10.89 | −14.91 | −18.89 | −22.82 | −26.70 |
AXP1 + H2O | −0.87 | −4.83 | −8.79 | −12.74 | −16.66 | −20.56 | −24.43 |
AXP2 + H2O | −7.83 | −11.84 | −15.85 | −19.86 | −23.83 | −27.79 | −31.71 |
AXP3 + H2O | −5.72 | −9.58 | −13.44 | −17.27 | −21.08 | −24.85 | −28.60 |
AXP4 + H2O | −4.26 | −8.16 | −12.05 | −15.93 | −19.77 | −23.59 | −27.38 |
AXP5 + H2O | −6.67 | −10.60 | −14.53 | −18.44 | −22.33 | −26.20 | −30.03 |
AXP6 + H2O | −5.13 | −9.06 | −12.99 | −16.89 | −20.77 | −24.63 | −28.45 |
AXP7 + H2O | −3.05 | −7.05 | −11.04 | −15.01 | −18.96 | −22.88 | −26.77 |
2-O-Acetyl-xylose | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
OADXP | 4.32 | 3.73 | 3.13 | 2.53 | 1.94 | 1.34 | 0.75 |
FFL1 + CH3COOH | −3.89 | −8.82 | −13.74 | −18.65 | −23.55 | −28.42 | −33.29 |
FFL2 + CH3COOH | −5.06 | −9.99 | −14.92 | −19.84 | −24.74 | −29.62 | −34.49 |
AXPL1 + H2O | 1.43 | −2.58 | −6.60 | −10.61 | −14.59 | −18.56 | −22.50 |
AXPL2 + CH3COOH | −15.11 | −19.92 | −24.75 | −29.60 | −34.44 | −39.28 | −44.11 |
AXPL3 + CH3COOH | −11.49 | −16.21 | −20.94 | −25.67 | −30.38 | −35.08 | −39.76 |
AXPL4 + H2O | −0.73 | −4.87 | −9.01 | −13.14 | −17.25 | −21.34 | −25.40 |
AXPL5 + H2O | −9.44 | −13.42 | −17.40 | −21.36 | −25.30 | −29.22 | −33.10 |
AXPL6 + H2O | −9.64 | −13.56 | −17.47 | −21.38 | −25.27 | −29.12 | −32.95 |
AXPL7 + H2O | −10.00 | −13.84 | −17.68 | −21.52 | −25.35 | −29.15 | −32.93 |
4OMGLA | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
DGLA | 2.19 | 1.98 | 1.77 | 1.57 | 1.36 | 1.17 | 0.97 |
FFL1 + H2O | −4.34 | −8.41 | −12.46 | −16.46 | −20.43 | −24.35 | −28.24 |
FFL2 + H2O | −5.81 | −9.92 | −14.00 | −18.04 | −22.04 | −26.00 | −29.92 |
AXPL1 + H2O | −0.05 | −4.02 | −7.99 | −11.95 | −15.89 | −19.80 | −23.68 |
AXPL2 + H2O | −5.23 | −9.30 | −13.37 | −17.44 | −21.49 | −25.52 | −29.51 |
AXPL3 + H2O | −6.76 | −10.72 | −14.68 | −18.62 | −22.54 | −26.43 | −30.29 |
AXPL4 + H2O | −2.52 | −6.62 | −10.71 | −14.78 | −18.83 | −22.86 | −26.85 |
AXPL5 + H2O | −5.58 | −9.58 | −13.58 | −17.58 | −21.56 | −25.52 | −29.45 |
AXPL6 + CH3OH | −7.34 | −11.88 | −16.41 | −20.93 | −25.44 | −29.92 | −34.38 |
AXPL7 + CH3OH | −6.92 | −11.58 | −16.25 | −20.91 | −25.55 | −30.17 | −34.77 |
From a kinetic perspective, the ring-opening reaction exhibits the highest rate for all species; see Fig. 2, panels a–c. However, the presence of substituents induces some qualitative and quantitative changes. Among all processes, the ring-opening shows the least sensitivity to temperature changes, evidenced by the lowest tilt of its rate line. The functional groups close the competing gap as the temperature increases, which is more evident for the moiety characterized by the highest number of substituent groups, i.e., 4-O-methyl-D-glucuronic acid. For xylose, the water elimination at C1 undergone through TS-AXP1, the dehydration at C4 associated with TS-AXP7, and the ring-contraction linked to TS-FF2 are the second, third, and fourth fastest processes, respectively; in contrast, this ranking shifts to TS-AXPL7, TS-FFL2, and TS-AXPL1 for the double-substituted species. In the case of 2-O-acetyl-xylose, one of the reactions involving the substituent (TS-AXPL3) will still lie within the three fastest depolymerization events, even assuming that both elementary reactions associated with TS-FFL1 and TS-FFL2 could be faster. Surprisingly, the other elimination involving the functional group (TS-AXPL2) is the lowest reaction. These kinetics further support our previous thermodynamic findings regarding the relevant role of proton-transfer directionality (see Fig. 2, panel d), thereby underscoring the need for an in-depth assessment of selectivity and steric effects. Regardless of the relatively high vibrational frequency of TSs associated with ring-opening and eliminations, the Eckart tunneling effects are extremely weak because temperatures characterizing the FP regimen greatly surpass the cross-over temperature (≈92–458 K). Consequently, the tunneling is shallow and points out that rate constants can be computed using the classical rate theory.84,85
Table 5 presents a detailed overview of the frequency factor (A) and activation energy (Ea) values derived from fitting the thermal rate constant data depicted in Fig. 2, panels a–c, to a two-parameter Arrhenius model. In the case of the simplest system, the highest values of A correspond to the ring-contractions FF1 and FF2. In contrast, for the O-acetyl functionalized species, the A maximum value corresponds to one of the elementary reactions involving the substituent, i.e., TS-AXPL2. As expected, the same trend is observed in the case of the double-functionalized system. This shows the consistency between the thermodynamic and kinetic findings that substituents indeed exert a catalytic-like effect in both functionalized species. However, the extent of this effect is contingent upon the relative spatial arrangement of the reacting centers, particularly the specific side of the proton attack. More importantly, while discernible, the influence of functional groups is insufficient to substantially bridge the competition gap between the ring-opening reaction and the other elementary steps within the FP regime.
Elementary reaction | A [s−1] | E a [kcal mol−1] | k [s−1] | k/ksum [%] |
---|---|---|---|---|
Xylose → D-xylose | 1.68 × 1013 | 44.68 | 4.11 | 100.00 |
Xylose → FF1 + H2O | 8.79 × 1013 | 72.71 | 2.63 × 10−7 | 6.40 × 10−6 |
Xylose → FF2 + H2O | 7.44 × 1013 | 64.62 | 4.28 × 10−5 | 1.04 × 10−3 |
Xylose → AXP1 + H2O | 3.79 × 1013 | 68.06 | 2.33 × 10−6 | 5.70 × 10−5 |
Xylose → AXP2 + H2O | 1.17 × 1013 | 79.31 | 4.80 × 10−10 | 1.17 × 10−8 |
Xylose → AXP3 + H2O | 3.17 × 1013 | 72.39 | 1.17 × 10−7 | 2.85 × 10−6 |
Xylose → AXP4 + H2O | 5.06 × 1013 | 74.17 | 5.86 × 10−8 | 1.42 × 10−6 |
Xylose → AXP5 + H2O | 2.46 × 1013 | 72.26 | 9.86 × 10−8 | 2.40 × 10−6 |
Xylose → AXP6 + H2O | 3.26 × 1013 | 73.28 | 6.74 × 10−8 | 1.64 × 10−6 |
Xylose → AXP7 + H2O | 1.69 × 1013 | 70.12 | 2.72 × 10−7 | 6.62 × 10−6 |
2-O-Acetyl-xylose → OADXP | 3.23 × 1012 | 41.87 | 4.90 | 100.00 |
2-O-Acetyl-xylose → FFL1 + CH3COOH | — | — | — | — |
2-O-Acetyl-xylose → FFL2 + CH3COOH | — | — | — | — |
2-O-Acetyl-xylose → AXPL1 + H2O | 3.95 × 1013 | 66.27 | 7.77 × 10−6 | 1.58 × 10−4 |
2-O-Acetyl-xylose → AXPL2 + CH3COOH | 5.03 × 1014 | 73.31 | 1.02 × 10−6 | 2.08 × 10−5 |
2-O-Acetyl-xylose → AXPL3 + CH3COOH | 1.84 × 1013 | 63.64 | 2.00 × 10−5 | 4.08 × 10−4 |
2-O-Acetyl-xylose → AXPL4 + H2O | 3.94 × 1013 | 69.62 | 8.78 × 10−7 | 1.79 × 10−5 |
2-O-Acetyl-xylose → AXPL5 + H2O | 8.61 × 1013 | 70.33 | 1.21 × 10−6 | 2.47 × 10−5 |
2-O-Acetyl-xylose → AXPL6 + H2O | 2.43 × 1013 | 68.66 | 1.01 × 10−6 | 2.06 × 10−5 |
2-O-Acetyl-xylose → AXPL7 + H2O | 3.97 × 1013 | 69.62 | 8.85 × 10−7 | 1.81 × 10−5 |
4-O-Methyl-D-glucuronic acid → DGLA | 8.39 × 1012 | 46.41 | 6.66 × 10−1 | 99.95 |
4-O-Methyl-D-glucuronic acid → FFL1 + H2O | 1.45 × 1014 | 80.14 | 3.48 × 10−9 | 5.22 × 10−7 |
4-O-Methyl-D-glucuronic acid → FFL2 + H2O | 1.23 × 1013 | 62.20 | 3.41 × 10−5 | 5.12 × 10−3 |
4-O-Methyl-D-glucuronic acid → AXPL1 + H2O | 3.38 × 1012 | 67.94 | 2.25 × 10−7 | 3.38 × 10−5 |
4-O-Methyl-D-glucuronic acid → AXPL2 + H2O | 1.77 × 1012 | 76.56 | 4.34 × 10−10 | 6.51 × 10−8 |
4-O-Methyl-D-glucuronic acid → AXPL3 + H2O | 5.39 × 1013 | 74.64 | 4.60 × 10−8 | 6.90 × 10−6 |
4-O-Methyl-D-glucuronic acid → AXPL4 + H2O | 1.19 × 1012 | 66.99 | 1.47 × 10−7 | 2.21 × 10−5 |
4-O-Methyl-D-glucuronic acid → AXPL5 + H2O | 8.93 × 1013 | 71.50 | 5.87 × 10−7 | 8.81 × 10−5 |
4-O-Methyl-D-glucuronic acid → AXPL6 + CH3OH | 1.04 × 1013 | 71.53 | 6.70 × 10−8 | 1.01 × 10−5 |
4-O-Methyl-D-glucuronic acid → AXPL7 + CH3OH | 1.80 × 1014 | 63.04 | 2.89 × 10−4 | 4.34 × 10−2 |
As expected, ELF disynaptic basins associated with the substituent positions show the most substantial variations in population (≈0.1 e), specifically V(C2,O2) and V(C4,O4). Nonetheless, the O-acetyl group exerts a discernible influence on nearby basins, as evidenced by the decrease of approximately 0.1 e in the V(C1,O1) population. While electron populations along the pyran ring maintain near-constant levels, the most relevant changes (±0.03 e) are observed over V(C1,O), the bonding region featuring the ring-opening process. The relatively low population of V(C1,O), V(C1,O1), V(C2,O2), V(C3,O3), and V(C4,O4) provides insights into the significance attributed to ring opening/contraction and eliminations as these classes of reactions comprise such basins, as detailed in Table 6.
ELF basina | Xylose | 2-O-Acetyl-xylose | 4-O-Methyl-D-glucuronic acid |
---|---|---|---|
a The labeling of oxygen matches the pattern delineated by the Ci–Oi bonding notation. | |||
V(C1,O) | 1.35 | 1.38 | 1.33 |
V(C1,C2) | 2.08 | 2.08 | 2.07 |
V(C2,C3) | 2.02 | 2.01 | 2.02 |
V(C3,C4) | 2.02 | 2.02 | 2.02 |
V(C4,C5) | 2.01 | 2.01 | 1.99 |
V(C5,O) | 1.29 | 1.29 | 1.29 |
V(C1,O1) | 1.41 | 1.36 | 1.42 |
V(C2,O2) | 1.29 | 1.39 | 1.29 |
V(C3,O3) | 1.28 | 1.28 | 1.29 |
V(C4,O4) | 1.27 | 1.27 | 1.32 |
Both the global and local chemical reactivity indices51,52,107 leverage electron density as a foundational parameter to extract meaningful chemical information. This physical-observable-based approach streamlines the correlation of theoretical insights with experimental observations, thereby providing depth to the analysis in the context of thermokinetic discussions. Over recent decades, Fukui's functions have become a subject of increasing interest in both biomass materials and biomass pyrolysis fields, with diverse and impactful applications. López and co-workers108 identified the most reactive sites of two lignin precursors in reactions involving radicals. Benguerba et al.109 proposed agricultural olive cake waste as a low-cost material for absorbing acids. Muñiz and collaborators110 developed a methodology to predict the performance of carbon-based electrode materials for energy storage by assessing the reaction mechanism of various lignocellulosic components resulting from the pyrolysis of Agave angustifolia leaves. Yáñez et al.111 studied the influence of a solvent-water mixture used to extract lignin (from Eucalyptus nitens) on its structural features and content of functional groups. Very recently, Xia and co-workers112 prepared graft-modified fibbers from starch polymers as alternative adhesives.
The electronic chemical potential, μ, reveals that the O-acetyl functionalized species is the most reactive (−4.80 eV), whereas the double substituted reactant displays the lowest reactivity (−4.62 eV). In contrast, xylose's susceptibility to exchanging electron density falls between these two values (i.e., μ = −4.75 eV). The relatively high global reactivity of 2-O-acetyl-xylose might be indicative of the moderate thermodynamic stability of the functional group since they can be straightforwardly dissociated through acetic acid, as observed in experiments.27,30
The striking low values of Fukui's functions f+, f−, and f0 reveal the extremely weak local reactivity of the investigated chemical species and justify the need for FP conditions. Moreover, this suggests the implausibility of the investigated processes being reversible, aligning with their thermodynamically favorable nature. Both the O-acetyl and methoxy functional groups consistently modulate the propensity of the system toward electrophilic attacks near C2 and C4, respectively; in contrast, while the latter significantly increases this probability at O4, the former lowers it in the locality of O2, as evidenced in Fig. 3, panel a. The value of f+ drops at the C2, C4, O2, and O4 centers, indicating that the substituents lower the propensity to a nucleophilic attack in their vicinity, see Fig. 3, panel b. The C2, C4, and O2 regions are less prone to a neutral (or radical) attack, while the probability notably increases at O4, see Fig. 3, panel c. For xylose, the preeminent reactivity of the pyran-ring oxygen might potentially support the notion that the ring-opening is the fastest reaction, as indicated by the highest values of f− and f0. Similarly, 4-O-methyl-D-glucuronic acid exhibits peak values for these functions for the methoxy oxygen (O4), possibly justifying the barrier reduction and the relatively high rate observed in one of the processes involving this functional group, namely, the elimination associated with TS-AXPL7. Intriguingly, in the case of 2-O-acetyl-xylose, all Fukui's functions are minimized at both C2 and O2, whereas f− and f0 are maximized at the C3 and O3 atoms. This signifies that O-acetyl diminishes the centers reactivity at the substituent position, while significantly favors it at the neighboring reacting center, C3. Nonetheless, these observations closely match the thermokinetic findings since the elimination undergone via TS-AXPL3 involving C3 is the reaction with the lowest barrier and highest rate, excluding ring-opening. For functionalized species, none of these local functions exhibit a notable peak at the pyran-ring oxygen, which contradicts the results derived from the thermokinetic analysis. Thus, these outcomes fall short of elucidating the thermokinetic observations across all structural motifs consistently.
Although Fig. 3 suggests that Fukui's functions might contribute to the learning of molecular thermodynamic properties of large and complex biomass systems, as demonstrated for other materials and processes, further work is needed. Therefore, forthcoming studies will focus on formulating this qualitative nexus into a predictive tool. A systematic assessment of alternative electron-density-based descriptors will be conducted to test their appropriateness. The integration of well-established theories, such as the Quantum Theory of Atoms in Molecules (QTAIM),113 will be considered as well.
Footnote |
† Electronic supplementary information (ESI) available. See DOI: https://doi.org/10.1039/d3cp06094b |
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