Jose
Yeste‡
a,
Marc
Azagra‡
a,
Maria A.
Ortega
a,
Alejandro
Portela
a,
Gergő
Matajsz
a,
Alba
Herrero-Gómez
a,
Yaewon
Kim
b,
Renuka
Sriram
b,
John
Kurhanewicz
bc,
Daniel B.
Vigneron
bc and
Irene
Marco-Rius
*a
aInstitute for Bioengineering of Catalonia, The Barcelona Institute of Science and Technology, Barcelona, Spain. E-mail: imarco@ibecbarcelona.eu
bDepartment of Radiology and Biomedical Imaging, University of California San Francisco, San Francisco, California, USA
cGraduate program in Bioengineering, University of California, Berkeley and University of California, San Francisco, California, USA
First published on 19th October 2023
The sensitivity of NMR may be enhanced by more than four orders of magnitude via dissolution dynamic nuclear polarization (dDNP), potentially allowing real-time, in situ analysis of chemical reactions. However, there has been no widespread use of the technique for this application and the major limitation has been the low experimental throughput caused by the time-consuming polarization build-up process at cryogenic temperatures and fast decay of the hyper-intense signal post dissolution. To overcome this limitation, we have developed a microfluidic device compatible with dDNP-MR spectroscopic imaging methods for detection of reactants and products in chemical reactions in which up to 8 reactions can be measured simultaneously using a single dDNP sample. Multiple MR spectroscopic data sets can be generated under the same exact conditions of hyperpolarized solute polarization, concentration, pH, and temperature. A proof-of-concept for the technology is demonstrated by identifying the reactants in the decarboxylation of pyruvate via hydrogen peroxide (e.g. 2-hydroperoxy-2-hydroxypropanoate, peroxymonocarbonate and CO2). dDNP-MR allows tracing of fast chemical reactions that would be barely detectable at thermal equilibrium by MR. We envisage that dDNP-MR spectroscopic imaging combined with microfluidics will provide a new high-throughput method for dDNP enhanced MR analysis of multiple components in chemical reactions and for non-destructive in situ metabolic analysis of hyperpolarized substrates in biological samples for laboratory and preclinical research.
Unlike other HP techniques such as parahydrogen induced polarization5,6 or chemically induced dynamic nuclear polarization,7 the strength of dDNP lies in the wide variety of biocompatible hyperpolarized substrates that reveal key metabolic pathways untraceable by any other technique.8,9 Moreover, dDNP is the only HP-MR technique currently undergoing clinical investigation for safety and for diagnosis and post-treatment assessment.10,11
The dDNP process involves polarization transfer from free electrons to the sample nuclear spins, increasing the nuclear spin population in the lower energetic state, and therefore the corresponding NMR signal. To achieve this, the sample must be cooled to liquid helium temperatures (∼1.4 K) and placed in a strong magnetic field (>3 T). Microwaves are then used to excite the free electrons and transfer their polarization to the nuclear spins of interest.
Advances in dDNP-MR have improved polarization efficiency,12,13 chemical formulations to avoid persistent radicals in the sample14–17 and lifetime of spin hyperpolarization in the solid state for sample transportation.3,18,19 However, the application potential of dDNP-MR is still limited by the time-consuming polarization build-up process and fast relaxation of the nuclear magnetization post dissolution. For instance, polarization time of [1-13C]pyruvate is usually on the order of tens of minutes, while T1 relaxation is on the order of tens of seconds at room temperature.20
Reactants and products in chemical reactions can be detected with a time resolution of seconds and nanomolar sensitivity using dissolution dDNP-MR.15 A major drawback of the technique, however, is that the preparation of hyperpolarized substrates by dDNP is time-consuming and costly, which limits its ability to generate data. A minimum amount of hyperpolarized sample has to be produced as an equipment limitation, and usually not more than 3–10% of the sample is used in the experiment.21 The development of more efficient methods to fully utilize the polarized samples, like the one proposed here, will shorten experimental time, increase throughput, decrease its associated costs, improve control over experimental variables and reproducibility and, as a result, contribute to expand the applications of dDNP-MR.
Commercial MR instrumentation only allows single sample acquisitions or a handful of consecutive samples as the polarization decays. Repeated MR readings have been possible with a single dDNP sample by continuous filling of a volume microcoil8 or sequential acquisitions by removing, reloading, and introducing a new sample again in a MR imaging (MRI) scanner and a high field NMR spectrometer.3,22–24 However, consecutive acquisitions are not conducted under the same hyperpolarized substrate conditions (i.e. polarization level, substrate concentration and pH may vary between DNP dissolutions) and may be affected by B0 distortions (shim maladjustments), which affect data repeatability and make comparison between sample groups impractical. An alternative strategy to effectively shorten the polarization build-up cycle is simultaneous polarization of multiple samples. Currently in vivo dDNP-MR experiments are typically limited to four samples, which are dissolved one by one on demand, for [1-13C]pyruvate injections at 5–20 min intervals.14,25 However, despite these advances, the throughput of dDNP remains long and inefficient. A relatively large volume of hyperpolarized sample (∼4.5 mL) is produced in each polarization process, while only a few hundred microliters are usually consumed, and the remaining sample is discarded.
This project was designed to address the unmet need for technology which enables parallel dDNP-MR experiments using a single spectrometer and demonstrate that microfluidics can effectively enhance the throughput of a single dDNP shot and provide many replicates for comparing experimental parameters. An MRI-compatible microfluidic structure was produced containing eight sample wells, each independently and uniformly infused with spin-hyperpolarized solution and vital media. All 8 chambers can be probed with a single dDNP sample using the same MR acquisition, with consistent and uniform polarization conditions between sample chambers. As a demonstration of the technology, dDNP-MR spectroscopic images (dDNP-MRSI; i.e. MRI encoding of space with a chemical shift dimension) were acquired using commercially available RF coils in a preclinical 3 T MRI scanner, where we detected reactants and products generated from a pyruvate decarboxylation via hydrogen peroxide (H2O2).26 Three reaction replicates and five control samples were tested simultaneously in the device.
PDMS layers of the microfluidic device were fabricated by soft lithography protocols using the patterned SU-8 molds. PDMS prepolymer (Sylgard 184, Ellsworth Adhesives) was prepared in a ratio of 10:
1 (elastomer base: curing agent, w/w) and degassed in a vacuum desiccator. The prepolymer was then cast on a Petri dish containing the SU-8 mold, baked at 65 °C for 4 h, and left overnight at room temperature. PDMS layers obtained included the microfluidic channels for 1) distributing the hyperpolarized sample (upper 4 mm thick layer), 2) suctioning fluid from the chambers (intermediate 1 mm thick layer), and 3) infusing fluid into the chambers (lower 5 mm thick layer). Chambers and ports (inlets and outlets) were punched in the corresponding PDMS layers, using 6 mm and 1.25 mm biopsy punches respectively. The three layer and a glass slide (75 × 38 mm Corning) were activated using O2 plasma (PDC-002, Harrick Plasma) and bonded together, resulting in a device with final dimensions of 11 mm thickness, 75 mm length, and 38 mm width.
To operate the microfluidic device from outside the MRI scanner, the inlet port of the microfluidic network for injecting the hyperpolarized sample, was connected to a female Luer-to-barb fitting using 114 cm of polytetrafluoroethylene (PTFE) tubing (1/16′′ outer diameter × 1/32′′ internal diameter Darwin microfluidics). This allowed the fast administration of hyperpolarized solutions by means of a syringe. Remaining ports (i.e., infusion and withdrawal ports) were connected with the same tubing and closed using tubing clamps.
Hyperpolarized sample, 1.6 mL, was injected into the microfluidic platform, which resulted in 125 ± 5 μL delivered in each chamber over a period of 3 seconds. Hyperpolarized 13C MR data was acquired with a chemical shift imaging (CSI) sequence (8 × 8 matrix, field of view of 40 mm × 40 mm, area of 5 mm × 5 mm per voxel, slice thickness of 12 mm, 15° flip angle, echo time of 1.49 ms, Tacq of 51.2 ms, and RT of 66.907 ms). Each point of the data set was acquired every 4 seconds. MR T2-weighted images were acquired using 4 scans. The whole matrix of voxels (i.e., 64 spectra) were acquired every 4 s with the first scan at the end of the hyperpolarized solution injection, i.e. at time 0. The transfer time between dissolution and injection was around 12 s.
The thermal equilibrium acquisition was performed on the microfluidic device with 100 μL solution of 8 M [13C]urea (Sigma Aldrich, Munich, Germany) and 10 mM Dota-Gd in two chambers located in the corners of the chip (Fig. 3A, highlighted in yellow). Those chambers were used to center the offset frequency, perform B1 calibration, shimming, and signal to noise ratio (SNR). Three chambers were filled with an aqueous solution containing 8.2 M H2O2 (Sigma Aldrich, Munich, Germany) and 37 mM NaOH (Fig. 3A, highlighted in red). The three remaining chambers were filled with 35 μL deionized water and 6.4 μL of 0.25 M NaOH solution (Fig. 3A, highlighted in blue). The MR localizer was performed with axial, sagittal, and coronal T2-weighted images using a spin echo T2 TurboRare sequence to assess signal location and accurately program the CSI voxels matrix.
To determine the MR signal from each chamber, spectra from the voxels containing regions of the same chamber were summed. The T2 weighted image was used to select those voxels, and a total of 4 voxels were summed per each chamber.
The platform was engineered using microfabrication (photolithography and soft lithography) processes and consisted of a stack of three polydimethylsiloxane (PDMS) layers on a glass substrate (Fig. 1A).29 The PDMS layers were developed by replica molding using a photoresist-patterned mold and were dedicated to the microfluidic parts: the sample-containing 4 × 2 array of 6 mm-diameter chambers (of 15 mm center to center spacing, 10 mm height, ∼280 μL total volume) and the microfluidic channels to distribute the hyperpolarized solution among the chambers. A network of sinusoidal channels (Fig. 1B), acting as fluidic resistances, in the upper PDMS layer split the sample throughout the device and made it possible to deliver the hyperpolarized solution rapidly and simultaneously to all the chambers. Eight distributed microfluidic channels leading to each chamber were designed to deliver the hyperpolarized sample from the top of the chamber to the testing sample, facilitating a rapid delivery of the fluid under 4 s (video in ESI† material).
Two further PDMS layers with microfluidic channels were integrated between the above layers to continuously infuse and withdraw solutions into and from the chambers. These channels were grouped in 2 independent sets of 4 chambers that shared inlet and outlet ports (enabling 2 different conditions and 4 replicates when these channels are open). These allow for a myriad of experimental setups in future applications. For example, they can be used for continuous renewal of the solution in the chambers while the device is located inside the MRI scanner. In this work, all experiments were performed with the withdrawal circuits closed in the device shown in Fig. 1C.
To confirm uniform distribution of samples across the chambers, we injected different volumes of water throughout the inlet port and collected and weighed the liquid received in each chamber. For total injected volumes of 1 mL, 1.4 mL, 1.8 mL, and 2.2 mL, the volumes per chamber were 59 ± 2 μL, 108 ± 11 μL, 154 ± 5 μL, and 191 ± 7 μL, respectively (Fig. 1D). Applying linear regression, the data fit (R-squared of 0.96) the following equation:
![]() | (1) |
In order to increase the throughput of HP experiments by a factor of 8 using our microfluidic device, we exploited the potential of MR spectroscopic imaging (MRSI), by which spatial and spectral information can be obtained simultaneously (Fig. 2A). To test the device for HP-MRSI, a solution of 80 mM hyperpolarized [1-13C]pyruvate was injected through the fluidic channels. The matrix (8 × 8) and voxel size (5 mm × 5 mm) was selected to cover all the chambers while maintaining shimming performance (Fig. 2B). Although the voxel size was smaller than the chamber size, we found that multiple voxels per chamber simplified the alignment of the device inside the RF coil. Since no voxel included more than one chamber, analysis was performed by adding the signals from voxels encompassing the same chamber.
Fig. 2C shows a representative spectrum from one voxel that contains part of a chamber. The apparent relaxation time constant of [1-13C]pyruvate was 3.7 ± 0.7 s, as calculated from the exponential decay of the C1 pyruvate resonance at 176 ppm chemical shift. Although the T1 of [1-13C]pyruvate after dDNP is expected to be around 60 s,30 the repeated RF pulses used to obtain the spectroscopic images (i.e., 64 pulses per each scan) caused a much faster 13C polarization loss. The spectral linewidth of the 13C1 pyruvate peak was 1.8 ppm (53 Hz) at full width at half maximum height.
The axial, sagittal, and coronal proton T2 weighted MR images acquired after the HP 13C-MRSI experiment confirmed that the HP solution had been delivered to all the chambers as expected (Fig. 2B).
Contrary to previous studies that increased the throughput either by sequential measurements with the same dissolution sample3,8 or by parallel polarization of 4 samples,14,25 our MRSI approach improves repeatability as all tested samples are detected under the same hyperpolarized substrate and shim conditions (FWHM = 53 ± 5 Hz).
As a proof of concept for detecting fast reactions using our parallelized microfluidic approach, we traced the 13C resonance shifts of the biologically relevant chemical reaction between [1-13C]pyruvate and H2O2 by acquiring spatially-localized 13C-MR spectra of the whole device every 4 seconds. Using the entire chamber capacity of the platform, two chambers of the platform were filled with a [13C]urea solution for chamber arrangement verification, three with a H2O2 solution to initiate the chemical reaction, and three with a sodium hydroxide solution as a negative control of the reaction (Fig. 3A).
The placement of the microfluidic device and acquisition matrix was validated before to the HP experiment by a proton T2-weighted image (Fig. 3B) and again after by detecting the thermal signal of the [13C]urea solution from two opposite corners of the device (Fig. 3C). After injection of the hyperpolarized pyruvate solution, the spectra of the chamber regions without H2O2 displayed only the pyruvate peak since no reaction had occurred (Fig. 3D). In chambers where the reaction took place, the bubbles generated by CO2 as a side of the reaction were easily visible, and spectral acquisitions displayed the characteristic multi-peak spectrum of pyruvate decarboxylation18 (Fig. 3E and F), where the following peaks were identified: [1-13C]pyruvate (176 ppm), [1-13C]pyruvate hydrate (184 ppm), [1-13C]2-hydroperoxy-2-hydroxypropanoate (181 ppm), [1-13C]peroxymonocarbonate (161 ppm), and 13CO2 (125 ppm). Parallel MRSI in the preclinical MRI scanner achieves high throughput at the expense of some spectral resolution, in comparison to say, a dedicated NMR spectrometer. The trade-off in resolution is, however, more than acceptable for hyperpolarized 13C MRSI where the resonances of metabolic products are dispersed over a wide chemical shift range. Additionally, the temporal evolution of the [1-13C]pyruvate signal was compared between different conditions by averaging the signal intensities from replicated chambers (Fig. 4). Dispersion among the three chambers per condition for the pyruvate peak were 23% and 18% at the first acquisition for chambers with and without the chemical reaction, respectively. At the time of the first acquisition (i.e., 25 s from dissolution), the pyruvate peak intensity from chambers with H2O2 was 2.5–3 lower than the signal from chambers containing non-oxidant solutions because of pyruvate's rapid consumption during the reaction (Fig. 4A). The pyruvate signal decay was dominated by the RF pulse polarization consumption, with an apparent decay time constant of 3.03 s in chambers with H2O2 and 2.96 s in chambers without reactant.
The observation that the relaxation time constant of [1-13C]pyruvate was similar (∼3 s) among conditions (i.e., chambers with and without H2O2) indicates that the resulting decay was exclusively due to the signal exponential decay by T1 and signal depletion by RF pulsing 64 times/acquisition. This also suggests that practically all the pyruvate had already been converted into the intermediate at the time of the first acquisition. In the chambers with H2O2, the signals from reaction subproducts decayed as a result of both the generation of the reactant and the T1 relaxation time constant of the hyperpolarized carbon nuclei (Fig. 4B). While over-crowded peaks in the downfield region (pyruvate, its hydrate and 2-hydroperoxy-2-hydroxypropanoate) could be detected above the noise level (i.e., SNR > 5) for up to 33 s after the injection of hyperpolarized pyruvate, the upfield peaks of the two final products (13CO2 and [1-13C]peroxymonocarbonate) were detectable for over a minute. The longer observation window for the products is probably attributed to the oxidation reaction, as the ongoing production of the final molecules counteracts the signal decay by T1. This could account for the slower decay rate of the two generated products (i.e., [1-13C]peroxymonocarbonate and 13CO2) respect to the consumed reactant and intermediate compound (i.e., [1-13C]pyruvate and [1-13C]2-hydroperoxy-2-hydroxypropanoate). Apparent decay rates were 0.28 ± 0.03 s−1 for [1-13C]pyruvate hydrate, 0.50 ± 0.05 s−1 for [1-13C]2-hydroperoxy-2-hydroxypropanoate, 0.15 ± 0.01 s−1 for [1-13C]peroxymonocarbonate, and 0.09 ± 0.01 s−1 for 13CO2. The time-normalized mass sensitivity is defined as
![]() | (2) |
The concentrations of all the species in the reaction were quantified considering a uniform 13C polarization decay (i.e., decay of the pyruvate signal in the well without H2O2) among all the species. Although the T1 values of the products are likely to be slightly different, this simplification enables to determine, approximately, their concentration when T1 is unknown. Within the time period where the SNR of the pyruvate was high (first 12s), we determined a plateau of the [1-13C]pyruvate concentration, a decrease of the intermediate product ([1-13C]2-hydroperoxy-2-hydroxypropanoate), and an increase of the final products ([1-13C]peroxymonocarbonate, and 13CO2).
To monitor fast reactions by HP-MR, the HP solution must mix with the reactant under study within seconds of reaching the science chambers. Our microfluidic device addressed this constraint by delivering the HP solution to each chamber in a cascade mode through eight channels (Fig. 1). For experiments where samples may need a convective flow for a proper mixing, we speculate that alternate infusion and withdrawal of the testing sample in the chambers using the additional channels included in our device would further enhance the mixing with the polarized sample.
Hyperpolarization-enhanced MR techniques are rapidly evolving and are expected to transform current analytical tools. Increasing their throughput will help overcome the barrier that prevents these techniques from being more accessible. This work showed that combining dDNP-MRSI and microfluidics can increase the capacity of identify products from chemical reactions and demonstrated that multiple samples can be simultaneously and non-invasively interrogated. Reaction kinetics and in situ metabolomic studies are potential applications of our platform beyond the proof-of-principle in this work.
Footnotes |
† Electronic supplementary information (ESI) available. See DOI: https://doi.org/10.1039/d3lc00474k |
‡ Authors contributed equally to this work |
This journal is © The Royal Society of Chemistry 2023 |