Wiktor
Zierkiewicz
*a,
Beata
Kizior
a,
Mariusz
Michalczyk
a,
Aneta
Jezierska
b and
Steve
Scheiner
*c
aWrocław University of Science and Technology, Faculty of Chemistry, Wybrzeże Wyspiańskiego 27, 50-370 Wroclaw, Poland. E-mail: wiktor.zierkiewicz@pwr.edu.pl
bUniversity of Wroclaw, Faculty of Chemistry, ul. F. Joliot-Curie 14, 50-383 Wroclaw, Poland
cUtah State University Logan, Department of Chemistry and Biochemistry, Utah 84322-0300, USA. E-mail: steve.scheiner@usu.edu
First published on 11th September 2023
Quantum calculations provide a systematic assessment of the ability of Group 10 transition metals M = Pd and Pt to act as an electron donor within the context of pnicogen, chalcogen, and halogen bonds. These M atoms are coordinated in a square planar geometry, attached to two N atoms of a modified phenanthrene unit, as well as two ligand atoms Cl, Br, or I. As the Lewis acid, a series of AFn molecules were chosen, which could form a pnicogen bond (A = P, As, Sb), chalcogen bond (A = S, Se, Te) or halogen bond (A = Cl, Br, I) with M. These noncovalent bonds are fairly strong, varying between 6 and 20 kcal mol−1, with the occupied dz2 orbital of M acting as the origin of charge transferred to the acid. Pt forms somewhat stronger bonds than Pd, and the bond strength rises with the size of the A atom of the acid. Within the context of smaller A atoms, the bond strength rises in the order pnicogen < chalcogen < halogen, but this distinction vanishes for the fifth-row A atoms. The nature of the ligand atoms on M has little bearing on the bond strength. Based on the Harmonic Oscillator Model of Aromaticity (HOMA) index, the ZB, YB and XB bonds were shown to have only a subtle effect on the ring electronic structures.
In 2019, the Au⋯H hydrogen bond was observed by NMR and IR and predicted theoretically in cationic gold(I) complexes featuring ditopic phosphine-ammonium (P, NH+) ligands.17 Its presence accounted for the stabilization of the most stable conformer (in relation to those without such H-bonds) by as much as 11 to 21 kcal mol−1. The source of this interaction was attributed to a donor–acceptor second-order interaction energy [E(2)] of 12.8 kcal mol−1 between d(Au) and the σ*(N–H) orbitals.17 Parallel spectroscopic and computational evidence was found in another gold(I) synthon, [Cl–Au–L]+ complex, where L refers to a protonated N-heterocyclic carbene.18 The Au⋯H–N bond detected therein was characterized by E(2) of 13 kcal mol−1 between the Au lone-pair (LP) and the σ*(N–H) orbital, while the overall binding energy was assessed as 10 kcal mol−1.18 The literature also contains reports of platinum to hydrogen interactions. Such a non-classical H-bond is explained mainly by charge transfer from the Pt dz2 orbital to σ*(X–H). In the model PtX2L2 complexes (X = Me, CN, OH, Br, Cl, F; L= NH3, CO, PH3) with HCl, the total interaction energy was strictly correlated with this interorbital interaction.19 Other studies demonstrating the binding of platinum(II) complexes to water are also known.20–22
Donor–acceptor interactions of the sort described above are not limited to H-bonds but extend to other noncovalent interactions, especially those which have recently gathered popularity, labeled as σ-hole interactions. Already in 1992, Politzer and coworkers23 theoretically predicted the positive electrostatic potential on the halogen ends in halogenated methanes and obtained their complexes with electron donors as benzene or p-xylene.
Further work24–28 in 2007 established the connotation of halogen bonds (XBs) as the electrostatic attraction between the negatively charged area of a nucleophile (electron lone pair, π-electron system) and the positive region localized along the R–X extension (σ-hole) in the Lewis acid molecule.29–32
The pace of this work continues to accelerate even today.33–39 Over the years, the investigations of these interactions have moved beyond halogen atoms, hence the development of analogous chalcogen or pnicogen bonds which engender robust study.36,40–44
The bulk of bonds of this type utilize either a lone pair of the nucleophile as the source of charge to be transferred, or a π-electron system, either localized as in ethylene, or aromatic. A new wrinkle in this bonding is the finding that there are occasions where metal atoms can serve as the electron source, despite their low electronegativity. As one example, Ivanov et al.45 spotted two unconventional halogen bond schemes in the crystal structure databank in which the dz2, dx2–y2 or dxy orbitals of metal attacked the σ-hole zone of halogen atoms. A Au⋯I XB was noted with Au in its d10 configuration (refcode ABAPAV46). A similar XB occurred with d8 metal – nickel. The Ni⋯I interaction in MEXBID47 was dominant and its magnitude was assessed at 4.5 kcal mol−1.45 Frontera and co-workers48,49 furthered this story by expansion of metal-involved XB motifs as I⋯Rh, Br⋯Pt, I⋯Pd, Br⋯Pd, Br⋯Ni, and Cl⋯Pt.49 A XB with a palladium(II) electron donor was found by Katlenok et al.50 The intramolecular I⋯Pt⋯I interaction was discovered by Bulatov and co-workers.51 The binding between I2 and various d8 metals (Pd, Ni, Co, Rh, and Ir) has also been described in van Koten's pincer complex and its 19 alterations.52 Eliseeva et al.53 found both a classical C–I⋯I XB and metal-including C–I⋯Pt in trans-[PtI2(NCN(CH2)5)2]·2CHI3, again using the Pt dz2 orbital as the electron source. It was also reported by Li et al.54 that Ni or Pt metal nanoparticles are able to interact with Na cations, HF or H2O based on the local electrostatic contacts between positively and negatively charged areas of subunits from both groups. The correlation between the electrostatic potential and the binding energy of anticipated Lewis base–Lewis acid complexes has been confirmed there.
Although not quite as plentiful, there are literature reports of parallel M electron donors beyond the XBs mentioned above. A CSD survey by Frontera and Bauza55 disclosed several square planar Pd/Pt coordination complexes with Se and Te chalcogen atoms as σ-hole donors. The strong directionality of these interactions was signaled by the orientation of the M dz2 orbital aimed at the σ-hole located at the chalcogen (Y) atom. Likewise, a chalcogen bond (YB), this time in the shape of the platinum(II) interaction with Se and Te centers was described by Rozhkov et al.56 with support from MEP, NBO and NCI analyses. The authors came to the conclusion, in line with previous studies, that the LP(Pt) dz2 → σ*(Ch–C) interorbital interaction is crucial for directionality and stabilization. Finally, the metal-assisted pnicogen bond (ZB) was reported for the first time in the literature by Burguera et al.57 by the observation of Sb⋯Pt(II) contacts within the crystal lattice. Again the results pointed to the repeated pattern of charge transfer from the occupied M dz2 orbital to the σ* orbital (in this case σ(Sb–Cl)*).
While results continue to accumulate that echo the claim that metal atoms can indeed function in the capacity of an electron donor in HBs and various σ-hole noncovalent bonds, the data remain fragmentary. Various studies examine pertinent systems, but usually focus on one particular sort of interaction, and usually for just one particular metal in a given setting, and with only one nucleophile. What is needed at this point is a comprehensive study that encompasses a wide range of different metals, substituents, and nucleophiles, which would permit the elucidation of a set of guiding principles. The work presented below comprises this sort of thorough study. Both Pd and Pt are considered within a square planar framework. Lying within a phenanothroline setting that bonds two N atoms to the metal, the other two substituents are varied from Cl to Br to I so as to cover a range of different electronegativities. The nucleophile approaching from above the M spans a set of different noncovalent bonds: halogen, chalcogen, and pnicogen. This wide spectrum of different bonding partners and noncovalent bond types is designed to cast a wide net to permit the extraction of the fundamental principles guiding the ability of metal atoms to serve as electron donors. The results ought to have implications for noncovalent bonds in general, as well as issues of coordination chemistry.
Each Molecular Electrostatic Potential (MEP) was probed by the MultiWFN software (ver. 3.7)65 so as to ascertain extrema or the MEP at a particular point. The topology of the electron density was analyzed according to the Quantum Theory of Atoms in Molecules (QTAIM).66–68 QTAIM analyses were carried out with the use of the AIMAll software.69 The Natural Bond Orbital (NBO) formulation was used to examine interorbital charge transfers and their energetic consequence.70 NBO calculations were performed using NBO 7.0 software.71 Decomposition of the interaction energies was performed at the PBE0-D3/ZORA/TZ2P level of theory72,73 using the ADF–EDA protocol according to the Morokuma–Ziegler scheme74 embedded in ADF software.75,76 The Harmonic Oscillator Model of Aromaticity (HOMA)77 revealed aromaticity changes in the fused rings of the Pd/Pt-systems caused by complexation. The aromaticity calculations were carried out using the Multiwfn (ver. 3.7) program.65
Visualizations were obtained with the Chemcraft (ver. 6.0.16)78 and IQmol79 programs. A survey of the Cambridge Structural Database via supporting CSD software Mercury and ConQuest80,81 noted a number of structures wherein a Pd or Pt atom within a square planar coordination was approached by a potential Lewis acid atom from the pnicogen, chalcogen, or halogen family, as described below.
Several sample structures drawn from the CSD are displayed in Fig. 1. The H atom positions in each were refined by a partial geometry optimization that left the non-H atoms in their X-ray positions. All share the primary feature that a halogen atom approaches a Pd or Pt atom from above the square planar local geometry in which it is ensconced. The metal is liganded by two O and two N atoms, with the latter atoms part of an aromatic ring. The latter ring is 5-membered for DAPYUQ82 and ZEWXUU,83 while YAVCIJ84 contains a hexagonal 6-membered ring. The approaching halogen atom is Br in DAPYUQ, and I in the other two. The central M is Pd for the former and Pt for the latter. Additional information regarding these three structures can be found in the ESI† (see Fig. S1–S3 and Table S1).
![]() | ||
Fig. 1 View of dimers extracted from crystal structures following optimization of the H atom positions (PBE0-D3/def2-TZVP level of theory) taken from the Cambridge Structural Database (CSD). |
With regards to the quantum chemical calculations, the metal-containing Lewis bases are modeled after the crystal systems. As shown in Fig. 2, the metal (Pd or Pt) is placed in a square planar bonding environment, attached to the two N atoms of a diazole ring within a modified phenanthrene structure, similar to that of DAPYUQ and ZEWXUU. The two other ligands L were taken as any of three different halogen atoms Cl, Br, or I. Three different AFn Lewis acid types were allowed to approach M from above: ZF3 in Fig. 2a where Z = P, As, or Sb, can engage in a Z⋯M pnicogen bond (ZB); YF2 (Y= S, Se, Te) in Fig. 2b can likewise form a chalcogen bond (YB) and a halogen bond (XB) is possible for XF in Fig. 2c. Altogether, these various combinations add up to a total of 54 different complexes that were examined here.
Lewis acid | V S,max, kcal mol−1 |
---|---|
PF3 | 26.28 |
AsF3 | 37.99 |
SbF3 | 46.17 |
SF2 | 34.16 |
SeF2 | 44.09 |
TeF2 | 52.26 |
ClF | 41.37 |
BrF | 49.52 |
IF | 57.43 |
The positive σ-hole will be interacting attractively with the negative region of the MEP that surrounds the Lewis base, specifically above the M atom. Although the MEP is negative in this region, the isodensity surface does not contain a minimum as such directly above the M atom, due in part to the negative areas associated with the L and N ligand atoms and their lone pairs. To provide an alternate gauge of the negative character of the MEP, this potential was evaluated for the base monomer at the position where the incoming A atom situates itself in each optimized complex. This quantity is reported as V in Table 2. There is some variation as one moves down either the Pd or Pt column, due primarily to the different intermolecular distances from one complex to the next, but there are several patterns that can be recognized, even if not strong ones. In the first place, the Pt systems on the right side of the table tend to have a somewhat more negative V. It also appears that the pair of Cl ligands in the upper section of Table 2 leads to a somewhat more negative V than do their Br cousins in the second segment, followed by I in the bottom third.
Lewis base | V | V s | Lewis base | V | V s |
---|---|---|---|---|---|
Pd-complexes | Pt-complexes | ||||
Cl2(Phen)Pd⋯PF3 | −13.00 | −17.24 | Cl2(Phen)Pt⋯PF3 | −13.81 | −20.81 |
Cl2(Phen)Pd⋯AsF3 | −17.89 | −21.23 | Cl2(Phen)Pt⋯AsF3 | −17.04 | −22.13 |
Cl2(Phen)Pd⋯SbF3 | −19.19 | −22.61 | Cl2(Phen)Pt⋯SbF3 | −18.76 | −24.32 |
Cl2(Phen)Pd⋯SF2 | −13.43 | −16.40 | Cl2(Phen)Pt⋯SF2 | −15.83 | −20.49 |
Cl2(Phen)Pd⋯SeF2 | −15.14 | −17.53 | Cl2(Phen)Pt⋯SeF2 | −16.98 | −21.13 |
Cl2(Phen)Pd⋯TeF2 | −16.38 | −19.40 | Cl2(Phen)Pt⋯TeF2 | −16.73 | −21.56 |
Cl2(Phen)Pd⋯ClF | −12.45 | −13.21 | Cl2(Phen)Pt⋯ClF | −15.78 | −17.81 |
Cl2(Phen)Pd⋯BrF | −12.77 | −13.98 | Cl2(Phen)Pt⋯BrF | −15.40 | −18.35 |
Cl2(Phen)Pd⋯IF | −13.34 | −15.43 | Cl2(Phen)Pt⋯IF | −14.91 | −19.21 |
Br2(Phen)Pd⋯PF3 | −12.49 | −16.52 | Br2(Phen)Pt⋯PF3 | −13.54 | −20.42 |
Br2(Phen)Pd⋯AsF3 | −16.52 | −19.72 | Br2(Phen)Pt⋯AsF3 | −17.12 | −22.67 |
Br2(Phen)Pd⋯SbF3 | −17.47 | −20.71 | Br2(Phen)Pt⋯SbF3 | −17.86 | −23.37 |
Br2(Phen)Pd⋯SF2 | −12.87 | −15.67 | Br2(Phen)Pt⋯SF2 | −15.32 | −19.93 |
Br2(Phen)Pd⋯SeF2 | −14.52 | −16.72 | Br2(Phen)Pt⋯SeF2 | −16.48 | −20.53 |
Br2(Phen)Pd⋯TeF2 | −15.41 | −18.09 | Br2(Phen)Pt⋯TeF2 | −16.21 | −20.84 |
Br2(Phen)Pd⋯ClF | −12.27 | −12.88 | Br2(Phen)Pt⋯ClF | −15.43 | −17.37 |
Br2(Phen)Pd⋯BrF | −12.62 | −13.65 | Br2(Phen)Pt⋯BrF | −15.13 | −17.94 |
Br2(Phen)Pd⋯IF | −13.14 | −15.04 | Br2(Phen)Pt⋯IF | −14.66 | −18.80 |
I2(Phen)Pd⋯PF3 | −11.80 | −16.08 | I2(Phen)Pt⋯PF3 | −13.18 | −20.34 |
I2(Phen)Pd⋯AsF3 | −14.81 | −18.38 | I2(Phen)Pt⋯AsF3 | −16.16 | −21.97 |
I2(Phen)Pd⋯SbF3 | −15.41 | −18.96 | I2(Phen)Pt⋯SbF3 | −16.76 | −22.47 |
I2(Phen)Pd⋯SF2 | −12.57 | −15.54 | I2(Phen)Pt⋯SF2 | −15.07 | −19.87 |
I2(Phen)Pd⋯SeF2 | −13.94 | −16.31 | I2(Phen)Pt⋯SeF2 | −16.23 | −20.37 |
I2(Phen)Pd⋯TeF2 | −14.41 | −17.15 | I2(Phen)Pt⋯TeF2 | −15.89 | −20.59 |
I2(Phen)Pd⋯ClF | −12.59 | −13.22 | I2(Phen)Pt⋯ClF | −15.73 | −17.63 |
I2(Phen)Pd⋯BrF | −12.83 | −13.91 | I2(Phen)Pt⋯BrF | −15.36 | −18.18 |
I2(Phen)Pd⋯IF | −13.10 | −15.08 | I2(Phen)Pt⋯IF | −14.81 | −18.97 |
In order to conform also with the usual prescription of locating and quantifying the minimum of the MEP on an isodensity surface with ρ = 0.001 au surrounding the base, this quantity is defined as VS and is reported in the next columns of Table 2. Rather than evaluate the MEP at the location of the electron acceptor atom, VS is equal to the MEP at that point along the M⋯A vector where ρ = 0.001 au. In the case where the central atom is Pt, the VS values are more negative. Thus, for example, the VS value calculated for LB in the geometry of the Cl2(Phen)Pd⋯AsF3 complex is −21 kcal mol−1. When palladium was exchanged with platinum the value of this potential decreased by about 5% (to −22 kcal mol−1). A noticeably larger difference was observed for Lewis bases in the geometry of Br2(Phen)Pd⋯ClF and Br2(Phen)Pt⋯ClF complexes where, in the case of the latter, the VS is smaller by about 50%. As can be seen from the data presented, the substitution of halogen substituents around the central metal atom causes slight changes in the value of VS. The greatest influence on the value of this parameter derives from the type of Lewis acid with which the complex is formed.
For six selected complexes (three containing a Pt atom and three with a Pd atom, two for each bond type considered), electrostatic potential values were calculated along the axis passing through the M and A atoms. Plots showing the relationship between the V value and the position on the M–A axis are included in the ESI† (see Fig. S4). These plots indicate the position of V and VS whose values can be found in Table 2.
Since neither V nor VS corresponds to a minimum on the surface of the electrostatic potential around LB, the values and positions of VS,min near the metal atom for the six LB are given in Fig. S5 (ESI†). The values of these minima are more negative than the values of V or VS. This suggests that in the case of any choice of the position of complexation, the Lewis acid would attach first precisely in the vicinity of halogen substituents. However, the subject under consideration in this paper is the complex in which it is LA that attaches directly to the metal atom (as is the case with complexes whose crystal structures are shown in Fig. 1).
Complex | R, Å | ΣrvdW (M⋯A) | R/ΣrvdW | θ | r(FA) | Δr(FA)a |
---|---|---|---|---|---|---|
a Between r(FA) in complex and isolated AFn. | ||||||
Cl2(Phen)Pd⋯PF3 | 3.420 | 4.05 | 0.84 | 172.1 | 1.581 | 0.008 |
Cl2(Phen)Pd⋯AsF3 | 3.210 | 4.03 | 0.80 | 171.8 | 1.732 | 0.017 |
Cl2(Phen)Pd⋯SbF3 | 3.208 | 4.62 | 0.69 | 165.3 | 1.909 | 0.023 |
Cl2(Phen)Pd⋯SF2 | 3.160 | 4.04 | 0.78 | 178.7 | 1.606 | 0.015 |
Cl2(Phen)Pd⋯SeF2 | 3.044 | 3.97 | 0.77 | 175.0 | 1.756 | 0.026 |
Cl2(Phen)Pd⋯TeF2 | 3.132 | 4.14 | 0.76 | 166.2 | 1.920 | 0.030 |
Cl2(Phen)Pd⋯ClF | 2.712 | 3.97 | 0.68 | 174.7 | 1.679 | 0.059 |
Cl2(Phen)Pd⋯BrF | 2.814 | 4.01 | 0.70 | 172.7 | 1.812 | 0.058 |
Cl2(Phen)Pd⋯IF | 2.998 | 4.19 | 0.72 | 169.4 | 1.953 | 0.048 |
Br2(Phen)Pd⋯PF3 | 3.444 | 4.05 | 0.85 | 171.7 | 1.580 | 0.007 |
Br2(Phen)Pd⋯AsF3 | 3.246 | 4.03 | 0.81 | 171.7 | 1.731 | 0.016 |
Br2(Phen)Pd⋯SbF3 | 3.246 | 4.62 | 0.70 | 165.6 | 1.908 | 0.022 |
Br2(Phen)Pd⋯SF2 | 3.185 | 4.04 | 0.79 | 178.2 | 1.605 | 0.014 |
Br2(Phen)Pd⋯SeF2 | 3.064 | 3.97 | 0.77 | 175.0 | 1.756 | 0.026 |
Br2(Phen)Pd⋯TeF2 | 3.145 | 4.14 | 0.76 | 166.7 | 1.921 | 0.031 |
Br2(Phen)Pd⋯ClF | 2.716 | 3.97 | 0.68 | 173.7 | 1.679 | 0.059 |
Br2(Phen)Pd⋯BrF | 2.820 | 4.01 | 0.70 | 171.6 | 1.813 | 0.059 |
Br2(Phen)Pd⋯IF | 3.008 | 4.19 | 0.72 | 167.9 | 1.954 | 0.049 |
I2(Phen)Pd⋯PF3 | 3.469 | 4.05 | 0.86 | 172.1 | 1.580 | 0.007 |
I2(Phen)Pd⋯AsF3 | 3.296 | 4.03 | 0.82 | 172.1 | 1.731 | 0.016 |
I2(Phen)Pd⋯SbF3 | 3.290 | 4.62 | 0.71 | 166.5 | 1.908 | 0.022 |
I2(Phen)Pd⋯SF2 | 3.192 | 4.04 | 0.79 | 177.2 | 1.606 | 0.015 |
I2(Phen)Pd⋯SeF2 | 3.073 | 3.97 | 0.77 | 175.3 | 1.757 | 0.027 |
I2(Phen)Pd⋯TeF2 | 3.148 | 4.14 | 0.76 | 167.8 | 1.922 | 0.032 |
I2(Phen)Pd⋯ClF | 2.707 | 3.97 | 0.68 | 172.6 | 1.684 | 0.064 |
I2(Phen)Pd⋯BrF | 2.814 | 4.01 | 0.70 | 170.4 | 1.818 | 0.064 |
I2(Phen)Pd⋯IF | 3.006 | 4.19 | 0.72 | 166.6 | 1.957 | 0.052 |
Cl2(Phen)Pt⋯PF3 | 3.376 | 4.19 | 0.81 | 175.7 | 1.583 | 0.010 |
Cl2(Phen)Pt⋯AsF3 | 3.152 | 4.17 | 0.76 | 174.5 | 1.736 | 0.021 |
Cl2(Phen)Pt⋯SbF3 | 3.149 | 4.76 | 0.66 | 167.8 | 1.914 | 0.028 |
Cl2(Phen)Pt⋯SF2 | 3.024 | 4.18 | 0.72 | 178.7 | 1.615 | 0.024 |
Cl2(Phen)Pt⋯SeF2 | 2.944 | 4.11 | 0.72 | 176.5 | 1.769 | 0.039 |
Cl2(Phen)Pt⋯TeF2 | 3.026 | 4.28 | 0.71 | 169.7 | 1.930 | 0.040 |
Cl2(Phen)Pt⋯ClF | 2.649 | 4.11 | 0.64 | 177.2 | 1.707 | 0.087 |
Cl2(Phen)Pt⋯BrF | 2.770 | 4.15 | 0.67 | 176.1 | 1.833 | 0.079 |
Cl2(Phen)Pt⋯IF | 2.951 | 4.33 | 0.68 | 174.4 | 1.968 | 0.063 |
Br2(Phen)Pt⋯PF3 | 3.401 | 4.19 | 0.81 | 175.1 | 1.583 | 0.010 |
Br2(Phen)Pt⋯AsF3 | 3.180 | 4.17 | 0.76 | 174.3 | 1.736 | 0.021 |
Br2(Phen)Pt⋯SbF3 | 3.176 | 4.76 | 0.67 | 167.8 | 1.913 | 0.027 |
Br2(Phen)Pt⋯SF2 | 3.048 | 4.18 | 0.73 | 178.5 | 1.615 | 0.024 |
Br2(Phen)Pt⋯SeF2 | 2.961 | 4.11 | 0.72 | 176.4 | 1.768 | 0.038 |
Br2(Phen)Pt⋯TeF2 | 3.039 | 4.28 | 0.71 | 169.6 | 1.930 | 0.040 |
Br2(Phen)Pt⋯ClF | 2.652 | 4.11 | 0.65 | 176.6 | 1.708 | 0.088 |
Br2(Phen)Pt⋯BrF | 2.774 | 4.15 | 0.67 | 175.4 | 1.834 | 0.080 |
Br2(Phen)Pt⋯IF | 2.957 | 4.33 | 0.68 | 173.6 | 1.968 | 0.063 |
I2(Phen)Pt⋯PF3 | 3.440 | 4.19 | 0.82 | 174.8 | 1.582 | 0.009 |
I2(Phen)Pt⋯AsF3 | 3.221 | 4.17 | 0.77 | 174.3 | 1.735 | 0.020 |
I2(Phen)Pt⋯SbF3 | 3.210 | 4.76 | 0.67 | 168.3 | 1.913 | 0.027 |
I2(Phen)Pt⋯SF2 | 3.073 | 4.18 | 0.74 | 178.0 | 1.614 | 0.023 |
I2(Phen)Pt⋯SeF2 | 2.972 | 4.11 | 0.72 | 176.5 | 1.769 | 0.039 |
I2(Phen)Pt⋯TeF2 | 3.048 | 4.28 | 0.71 | 169.8 | 1.931 | 0.041 |
I2(Phen)Pt⋯ClF | 2.649 | 4.11 | 0.64 | 175.8 | 1.711 | 0.091 |
I2(Phen)Pt⋯BrF | 2.775 | 4.15 | 0.67 | 174.5 | 1.837 | 0.083 |
I2(Phen)Pt⋯IF | 2.962 | 4.33 | 0.68 | 172.4 | 1.971 | 0.066 |
With regard to the internal geometry of the Lewis acid units, the r(FA) distances referring to the F that lies diametrically opposite the M are contained in the penultimate column of Table 3. These values are followed in the last column by the stretch of this bond relative to the fully optimized monomer. These stretches are largest for the halogen-bonded complexes, followed in order by the YB and then the ZB. On the other hand, the sensitivity of this stretching to the size of the A atom is curious. Both the YF and ZF elongations grow in magnitude along with the size of the Y and Z atom, respectively. However, this pattern appears to reverse for the XBs, where enlarging the X atom causes this elongation to diminish.
The aromaticity changes in polycyclic aromatic compounds have been an object of experimental and theoretical studies.85,86 It has been learned that the value of the aromaticity index for each individual ring depends on the topological environment. Terminal rings tend to exhibit a high aromaticity value, but this property diminishes as the number of rings increases.
The aromaticity in the metal-containing species was analyzed using the Harmonic Oscillator Model of Aromaticity – HOMA index. Table S2 (ESI†) indicates a lower level of aromaticity in the central ring of the various molecules, whether M = Pd or Pt. The HOMA index is a bit higher for Pt vs. Pd, and diminishes slightly as the ligands become heavier Cl >Br > I. This index is reported for the complexes with the Lewis acids in Table S3 (ESI†) which displays many of the same trends as in the uncomplexed monomers. Comparison with Table S2 (ESI†) demonstrates very little effect of the complexation on terminal ring aromaticities. There is a small perturbation of the central ring, where the aromaticity tends to increase slightly, but this rise amounts to only several percent at most. The amount of this increment rises slightly with the size of the approaching atom, irrespective of whether it is halogen, chalcogen, or pnicogen.
Complex | E int | E b | E def | ρ BCP, au | E2 kcal mol−1 | CTa, me | q(M), e |
---|---|---|---|---|---|---|---|
a Obtained by the NBO approach. | |||||||
Cl2(Phen)Pd⋯PF3 | −6.40 | −7.03 | 0.34 | 0.011 | 1.3 | 2.7 | 0.665 |
Cl2(Phen)Pd⋯AsF3 | −11.68 | −12.10 | 0.85 | 0.017 | 5.4 | 30.5 | 0.656 |
Cl2(Phen)Pd⋯SbF3 | −17.32 | −17.12 | 1.44 | 0.020 | 7.5 | 52.6 | 0.649 |
Cl2(Phen)Pd⋯SF2 | −7.36 | −8.04 | 0.37 | 0.015 | 2.0 | 27.9 | 0.666 |
Cl2(Phen)Pd⋯SeF2 | −11.69 | −12.27 | 0.75 | 0.022 | 6.5 | 66.1 | 0.660 |
Cl2(Phen)Pd⋯TeF2 | −16.14 | −16.21 | 1.08 | 0.023 | 7.4 | 89.6 | 0.659 |
Cl2(Phen)Pd⋯ClF | −9.49 | −9.15 | 1.25 | 0.036 | 10.6 | 152.5 | 0.703 |
Cl2(Phen)Pd⋯BrF | −12.28 | −12.07 | 1.15 | 0.035 | 12.3 | 160.0 | 0.690 |
Cl2(Phen)Pd⋯IF | −13.98 | −13.92 | 0.76 | 0.030 | 22.9 | 142.2 | 0.669 |
Br2(Phen)Pd⋯PF3 | −6.51 | −7.09 | 0.34 | 0.010 | 1.0 | 1.2 | 0.577 |
Br2(Phen)Pd⋯AsF3 | −11.64 | −12.05 | 0.82 | 0.016 | 4.9 | 28.4 | 0.567 |
Br2(Phen)Pd⋯SbF3 | −17.10 | −16.91 | 1.34 | 0.019 | 6.8 | 49.8 | 0.560 |
Br2(Phen)Pd⋯SF2 | −7.37 | −8.05 | 0.34 | 0.015 | 1.9 | 25.8 | 0.576 |
Br2(Phen)Pd⋯SeF2 | −11.66 | −12.25 | 0.71 | 0.021 | 6.6 | 64.6 | 0.568 |
Br2(Phen)Pd⋯TeF2 | −16.06 | −16.15 | 1.01 | 0.022 | 7.2 | 91.4 | 0.566 |
Br2(Phen)Pd⋯ClF | −9.64 | −9.26 | 1.28 | 0.036 | 10.2 | 151.9 | 0.608 |
Br2(Phen)Pd⋯BrF | −12.50 | −12.24 | 1.17 | 0.034 | 11.7 | 160.4 | 0.593 |
Br2(Phen)Pd⋯IF | −14.30 | −14.16 | 0.78 | 0.029 | 21.8 | 143.4 | 0.573 |
I2(Phen)Pd⋯PF3 | −6.56 | −7.16 | 0.30 | 0.010 | 1.3 | -0.2 | 0.448 |
I2(Phen)Pd⋯AsF3 | −11.44 | −11.87 | 0.74 | 0.014 | 4.4 | 26.8 | 0.440 |
I2(Phen)Pd⋯SbF3 | −16.60 | −16.49 | 1.19 | 0.017 | 6.1 | 48.9 | 0.433 |
I2(Phen)Pd⋯SF2 | −7.42 | −8.10 | 0.34 | 0.015 | 1.9 | 26.3 | 0.446 |
I2(Phen)Pd⋯SeF2 | −11.72 | −12.30 | 0.70 | 0.021 | 7.1 | 67.6 | 0.437 |
I2(Phen)Pd⋯TeF2 | −16.07 | −16.17 | 0.97 | 0.022 | 7.1 | 98.3 | 0.434 |
I2(Phen)Pd⋯ClF | −10.30 | −9.71 | 1.48 | 0.037 | 10.4 | 162.5 | 0.476 |
I2(Phen)Pd⋯BrF | −13.26 | −12.82 | 1.34 | 0.035 | 11.8 | 171.8 | 0.460 |
I2(Phen)Pd⋯IF | −15.07 | −14.80 | 0.89 | 0.029 | 22.3 | 154.8 | 0.439 |
Cl2(Phen)Pt⋯PF3 | −6.97 | −7.42 | 0.40 | 0.014 | 3.1 | 12.0 | 0.662 |
Cl2(Phen)Pt⋯AsF3 | −12.73 | −12.87 | 0.99 | 0.023 | 12.9 | 52.5 | 0.656 |
Cl2(Phen)Pt⋯SbF3 | −18.78 | −18.30 | 1.56 | 0.027 | 19.6 | 79.6 | 0.649 |
Cl2(Phen)Pt⋯SF2 | −8.82 | −9.13 | 0.76 | 0.025 | 5.5 | 66.6 | 0.678 |
Cl2(Phen)Pt⋯SeF2 | −14.43 | −14.30 | 1.41 | 0.033 | 17.1 | 119.4 | 0.683 |
Cl2(Phen)Pt⋯TeF2 | −19.34 | −18.71 | 1.70 | 0.034 | 25.7 | 140.2 | 0.676 |
Cl2(Phen)Pt⋯ClF | −13.94 | −12.13 | 2.63 | 0.050 | 23.2 | 241.0 | 0.763 |
Cl2(Phen)Pt⋯BrF | −16.76 | −15.52 | 2.08 | 0.046 | 24.8 | 235.9 | 0.743 |
Cl2(Phen)Pt⋯IF | −18.08 | −17.39 | 1.32 | 0.039 | 54.2 | 207.9 | 0.713 |
Br2(Phen)Pt⋯PF3 | −7.10 | −7.51 | 0.39 | 0.013 | 3.2 | 8.9 | 0.575 |
Br2(Phen)Pt⋯AsF3 | −12.81 | −12.94 | 0.96 | 0.022 | 11.6 | 48.1 | 0.568 |
Br2(Phen)Pt⋯SbF3 | −18.81 | −18.31 | 1.51 | 0.025 | 17.7 | 74.8 | 0.561 |
Br2(Phen)Pt⋯SF2 | −8.79 | −9.12 | 0.70 | 0.023 | 5.0 | 60.8 | 0.588 |
Br2(Phen)Pt⋯SeF2 | −14.39 | −14.27 | 1.37 | 0.032 | 15.8 | 114.2 | 0.592 |
Br2(Phen)Pt⋯TeF2 | −19.35 | −18.69 | 1.67 | 0.033 | 23.8 | 136.2 | 0.584 |
Br2(Phen)Pt⋯ClF | −13.97 | −12.12 | 2.65 | 0.050 | 22.2 | 239.5 | 0.672 |
Br2(Phen)Pt⋯BrF | −16.85 | −15.56 | 2.10 | 0.045 | 23.9 | 234.3 | 0.650 |
Br2(Phen)Pt⋯IF | −18.25 | −17.49 | 1.33 | 0.038 | 52.2 | 206.1 | 0.618 |
I2(Phen)Pt⋯PF3 | −7.24 | −7.65 | 0.38 | 0.012 | 3.0 | 6.3 | 0.444 |
I2(Phen)Pt⋯AsF3 | −12.77 | −12.93 | 0.91 | 0.020 | 10.0 | 44.6 | 0.438 |
I2(Phen)Pt⋯SbF3 | −18.63 | −18.19 | 1.43 | 0.024 | 15.5 | 72.5 | 0.429 |
I2(Phen)Pt⋯SF2 | −8.81 | −9.17 | 0.67 | 0.022 | 4.5 | 57.0 | 0.455 |
I2(Phen)Pt⋯SeF2 | −14.47 | −14.34 | 1.38 | 0.031 | 15.7 | 113.8 | 0.458 |
I2(Phen)Pt⋯TeF2 | −19.50 | −18.79 | 1.71 | 0.032 | 22.5 | 137.2 | 0.448 |
I2(Phen)Pt⋯ClF | −14.45 | −12.40 | 2.86 | 0.050 | 21.8 | 246.4 | 0.538 |
I2(Phen)Pt⋯BrF | −17.36 | −15.94 | 2.24 | 0.045 | 23.0 | 240.1 | 0.514 |
I2(Phen)Pt⋯IF | −18.82 | −17.97 | 1.42 | 0.038 | 50.4 | 211.2 | 0.480 |
As may be seen by a comparison between the first two columns of Table 4, these two energetic measures of the noncovalent bonds are quite similar to one another, obeying very similar trends. The bond is strengthened as the central A atom grows larger, and by quite a bit. For example, the interaction energy of the Br2(Phen)Pd⋯PF3 complex is nearly tripled when the P is replaced by Sb. The variation from ZB to YB to XB does not conform to a simple pattern. For example, bonds strengthen in the order Pd⋯P < Pd⋯S < Pd⋯Cl for the second-row A atoms, but this pattern reverses when the atoms are drawn from the fourth row: Pd⋯Sb > Pd⋯Te < Pd⋯I. The bonds employing Pt as the electron donor are somewhat stronger than their Pd parallels.
The next column of Table 4 displays the deformation energy which is defined as the difference in energy between each optimized monomer, and that of the same molecule in the geometry it adopts within the complex. This quantity is fairly small, 1 kcal mol−1 or less, so has little impact on the trends within the data. One can see an interesting pattern in that this strain energy tends to grow for larger pnicogen or chalcogen atoms, but changes in the opposite direction, becoming smaller as the halogen atom enlarges.
As another variant of the QTAIM analysis of the electron density topology, NCI presents a three-dimensional diagram of the reduced density gradient. The NCI diagrams of several of the Pd and Pt complexes in Fig. S6 and S7 (ESI†) respectively present further evidence of the noncovalent bonding between the M and A atoms. The transition of the color in the relevant interatomic region from green to light blue to darker blue is also consistent with the QTAIM ρBCP designations of the bond strength increasing from ZB to YB to XB.
As the z-axis in each complex was defined as the M⋯A direction, it is the dz2 orbital that most closely aligns with the empty orbital of the Lewis acid to which it may transfer some of its density. The energetic consequence of this transfer is measured by NBO as a second order perturbation energy E2. The orbital acting as the receptor of this charge was in many cases a lone vacant orbital, specifically the valence pz orbital, and in other cases it is the σ*(AF) antibonding orbital that acts in this capacity. The values of E2 for the various complexes are contained in the next column of Table 4 where it is readily apparent that these transfers make a sizable contribution to each bond. Unlike some of the other parameters, E2 behaves in a very regular fashion, growing larger along with the size of the A atom. It is also clear that E2 is much larger for the XBs, followed by the YBs, and are smallest for the ZBs. Another unique aspect of this parameter is that there is a considerably greater degree of charge transfer for the Pt complexes in the bottom half of the table as compared to the Pd counterparts in the upper half. Indeed, the former are between 2 and 3 times larger than the latter.
The interaction between the Lewis acid and base will naturally lead to a certain amount of charge being transferred from the latter subunit to the former. This total CT was computed as the sum of natural atomic charges on each monomer, and is reported in the next column of Table 4. This quantity is largest for the XBs, followed in turn by the YBs and then the ZBs. In most cases, CT grows as the A atom enlarges, although there is an inversion noted in the transition from BrF to IF. There is also a tendency for the CT to be quite a bit larger for the Pt dyads than for their Pd analogues. The last column of Table 4 lists the natural charge assigned to the M atom in each complex. All of these charges fall into the range between 0.4 and 0.8, with little distinction between Pd and Pt. It would appear that this atomic charge is most positive when the base is conjoined with a XB, in keeping with the larger total charge transferred from the metal-bearing base unit. It is this positive charge which makes the activity of these M-bearing units as nucleophiles counterintuitive in some ways.
Another window into the nature of the bonding is opened by way of a decomposition of the total interaction energy into a number of physically meaningful components. This decomposition provides an electrostatic component EES arising from the Coulombic interaction between the full charge clouds of the two monomers, prior to any mutual polarization. The mutual effects of the two subunits on the orbitals within, a combination of polarization and charge transfer, is encompassed by EOI, and the dispersion energy is included as well, as Edis. The Pauli repulsion prevents the two monomers from collapsing into one another. All of these terms were calculated and included in Table 5. For each of the three attractive components, its percentage contribution to the total attractive energy (EES + EOI + Edis) is also included in the table.
Complex | E Pauli | E ES | % | E dis | % | E OI | % | E int |
---|---|---|---|---|---|---|---|---|
Cl2(Phen)Pd⋯PF3 | 8.76 | −7.49 | 49 | −3.96 | 26 | −3.94 | 26 | −6.62 |
Cl2(Phen)Pd⋯AsF3 | 16.54 | −15.52 | 54 | −4.35 | 15 | −8.85 | 31 | −12.18 |
Cl2(Phen)Pd⋯SbF3 | 25.37 | −23.51 | 56 | −4.51 | 11 | −13.79 | 33 | −16.44 |
Cl2(Phen)Pd⋯SF2 | 12.61 | −9.42 | 45 | −3.58 | 17 | −8.01 | 38 | −8.40 |
Cl2(Phen)Pd⋯SeF2 | 21.64 | −16.60 | 47 | −4.03 | 11 | −14.69 | 42 | −13.68 |
Cl2(Phen)Pd⋯TeF2 | 29.33 | −23.02 | 50 | −4.26 | 9 | −18.87 | 41 | −16.81 |
Cl2(Phen)Pd⋯ClF | 30.43 | −16.85 | 38 | −2.62 | 6 | −25.16 | 56 | −14.20 |
Cl2(Phen)Pd⋯BrF | 31.09 | −19.16 | 40 | −3.06 | 6 | −26.11 | 54 | −17.24 |
Cl2(Phen)Pd⋯IF | 30.26 | −20.64 | 44 | −3.40 | 7 | −23.14 | 49 | −16.91 |
Br2(Phen)Pd⋯PF3 | 8.67 | −7.33 | 48 | −4.13 | 27 | −3.95 | 26 | −6.74 |
Br2(Phen)Pd⋯AsF3 | 15.98 | −14.83 | 53 | −4.63 | 16 | −8.76 | 31 | −12.25 |
Br2(Phen)Pd⋯SbF3 | 24.23 | −22.26 | 55 | −4.83 | 12 | −13.57 | 33 | −16.44 |
Br2(Phen)Pd⋯SF2 | 12.24 | −9.09 | 44 | −3.73 | 18 | −7.87 | 38 | −8.46 |
Br2(Phen)Pd⋯SeF2 | 21.28 | −16.14 | 46 | −4.21 | 12 | −14.71 | 42 | −13.78 |
Br2(Phen)Pd⋯TeF2 | 29.03 | −22.43 | 49 | −4.48 | 10 | −19.04 | 41 | −16.93 |
Br2(Phen)Pd⋯ClF | 30.40 | −16.75 | 37 | −2.73 | 6 | −25.35 | 57 | −14.43 |
Br2(Phen)Pd⋯BrF | 31.13 | −19.10 | 39 | −3.20 | 7 | −26.44 | 54 | −17.62 |
Br2(Phen)Pd⋯IF | 30.43 | −20.69 | 43 | −3.56 | 7 | −23.54 | 49 | −17.36 |
I2(Phen)Pd⋯PF3 | 8.84 | −7.38 | 47 | −4.31 | 28 | −3.92 | 25 | −6.76 |
I2(Phen)Pd⋯AsF3 | 15.39 | −14.22 | 52 | −4.88 | 18 | −8.36 | 30 | −12.07 |
I2(Phen)Pd⋯SbF3 | 23.62 | −21.42 | 54 | −5.10 | 13 | −13.19 | 33 | −16.09 |
I2(Phen)Pd⋯SF2 | 12.63 | −9.27 | 44 | −3.86 | 18 | −7.98 | 38 | −8.49 |
I2(Phen)Pd⋯SeF2 | 22.08 | −16.52 | 46 | −4.39 | 12 | −15.02 | 42 | −13.86 |
I2(Phen)Pd⋯TeF2 | 30.13 | −22.88 | 49 | −4.68 | 10 | −19.58 | 42 | −17.02 |
I2(Phen)Pd⋯ClF | 32.31 | −17.95 | 38 | −2.83 | 6 | −26.63 | 56 | −15.09 |
I2(Phen)Pd⋯BrF | 33.03 | −20.42 | 40 | −3.31 | 6 | −27.62 | 54 | −18.33 |
I2(Phen)Pd⋯IF | 32.46 | −22.22 | 44 | −3.67 | 7 | −24.67 | 49 | −18.10 |
Cl2(Phen)Pt⋯PF3 | 11.23 | −9.17 | 50 | −4.13 | 22 | −5.10 | 28 | −7.17 |
Cl2(Phen)Pt⋯AsF3 | 22.42 | −19.42 | 55 | −4.60 | 13 | −11.46 | 32 | −13.06 |
Cl2(Phen)Pt⋯SbF3 | 33.12 | −28.71 | 57 | −4.80 | 9 | −17.16 | 34 | −17.54 |
Cl2(Phen)Pt⋯SF2 | 21.37 | −14.78 | 47 | −3.71 | 12 | −12.93 | 41 | −10.05 |
Cl2(Phen)Pt⋯SeF2 | 33.26 | −24.17 | 49 | −4.21 | 9 | −21.05 | 43 | −16.17 |
Cl2(Phen)Pt⋯TeF2 | 40.82 | −30.91 | 51 | −4.60 | 8 | −24.88 | 41 | −19.57 |
Cl2(Phen)Pt⋯ClF | 48.04 | −27.13 | 41 | −2.67 | 4 | −36.44 | 55 | −18.21 |
Cl2(Phen)Pt⋯BrF | 45.30 | −28.52 | 43 | −3.12 | 5 | −34.53 | 52 | −20.87 |
Cl2(Phen)Pt⋯IF | 42.80 | −29.38 | 47 | −3.51 | 6 | −30.15 | 48 | −20.24 |
Br2(Phen)Pt⋯PF3 | 10.91 | −8.94 | 49 | −4.28 | 23 | −5.03 | 28 | −7.34 |
Br2(Phen)Pt⋯AsF3 | 21.72 | −18.77 | 54 | −4.85 | 14 | −11.34 | 32 | −13.23 |
Br2(Phen)Pt⋯SbF3 | 32.19 | −27.85 | 56 | −5.07 | 10 | −17.08 | 34 | −17.81 |
Br2(Phen)Pt⋯SF2 | 20.52 | −14.18 | 46 | −3.85 | 13 | −12.56 | 41 | −10.07 |
Br2(Phen)Pt⋯SeF2 | 32.66 | −23.60 | 48 | −4.39 | 9 | −20.95 | 43 | −16.28 |
Br2(Phen)Pt⋯TeF2 | 40.47 | −30.45 | 51 | −4.80 | 8 | −25.01 | 42 | −19.79 |
Br2(Phen)Pt⋯ClF | 47.85 | −26.91 | 41 | −2.78 | 4 | −36.59 | 55 | −18.44 |
Br2(Phen)Pt⋯BrF | 45.21 | −28.35 | 43 | −3.26 | 5 | −34.82 | 52 | −21.21 |
Br2(Phen)Pt⋯IF | 42.77 | −29.26 | 46 | −3.67 | 6 | −30.47 | 48 | −20.64 |
I2(Phen)Pt⋯PF3 | 10.52 | −8.78 | 49 | −4.47 | 25 | −4.77 | 26 | −7.51 |
I2(Phen)Pt⋯AsF3 | 20.95 | −18.26 | 53 | −5.08 | 15 | −10.88 | 32 | −13.28 |
I2(Phen)Pt⋯SbF3 | 31.61 | −27.38 | 55 | −5.30 | 11 | −16.76 | 34 | −17.84 |
I2(Phen)Pt⋯SF2 | 20.13 | −14.11 | 47 | −3.98 | 13 | −12.18 | 40 | −10.14 |
I2(Phen)Pt⋯SeF2 | 33.13 | −24.00 | 48 | −4.54 | 9 | −21.03 | 42 | −16.44 |
I2(Phen)Pt⋯TeF2 | 41.46 | −31.22 | 51 | −4.96 | 8 | −25.38 | 41 | −20.10 |
I2(Phen)Pt⋯ClF | 49.30 | −28.02 | 41 | −2.88 | 4 | −37.45 | 55 | −19.05 |
I2(Phen)Pt⋯BrF | 46.41 | −29.46 | 43 | −3.37 | 5 | −35.42 | 52 | −21.85 |
I2(Phen)Pt⋯IF | 44.05 | −30.55 | 47 | −3.79 | 6 | −31.05 | 47 | −21.35 |
In general terms, the electrostatic attraction accounts for roughly half of the total. This percentage is greatest for the ZBs, and smallest for the XBs. One also may note that this same quantity rises as the A atom grows in size. EOI is a bit more variable: it is smaller than EES for the ZBs and YBs, but larger for the XBs. The dispersion's contribution is quite variable. Although its magnitude grows slowly with the increasing size of the A atom, its percentage contribution drops as both EES and EOI climb much more quickly. As another point of comparison, Edis diminishes as one progresses from the pnicogen and then to the chalcogen and halogen bonds.
The bottom row of Fig. 3 relates each of the various properties to the overall interaction energy. The binding energy Eb correlates very well, as one would expect, differing from Eint only by deformation energy. The other parameter with a correlation coefficient exceeding 0.9 is the electrostatic component, with |R| = 0.95. This correlation is much better than with the orbital interaction energy or the dispersion component. Also the product of Vs (from Table 2) and Vs,max (from Table 1) very well correlate with the value of the interaction energy. This additionally indicates that an important ingredient of this interaction is an electrostatic term (which is dominant in the case of complexes containing a pnicogen or chalcogen bond).
The correlations with the QTAIM quantities, H (the density of total electron energy), ρBCP, and ∇2ρ are surprisingly poor, and that with the MEP minimum on the base is only 0.60. The correlation between Eint and Rnorm, in which the intermolecular distance is divided by the sum of vdW radii, is far superior to that for the simple and uncorrected R(M…A). For CT, unsurprisingly, the best correlation was found with Eoi. Moreover, CT correlates very well with electron density as well as the total energy density at the BCP (bond critical point). There is a good deal of internal agreement between the various measures of bond strength arising from QTAIM analysis, as shown by the dark green regions in the upper portion of the triangle in Fig. 3, which in turn are strongly correlated with the intermolecular distance R. Some of the QTAIM parameters also correlate well with the Pauli repulsion and orbital interaction component EOI.
Part of the reason for some of the mediocre correlations is the mixing together of all three sorts of noncovalent bonds together in Fig. 3. There is a good deal of improvement if only one sort of bond is considered as for example the series of ZB complexes in Fig. 4. Most of the colors are either dark or light green as compared to numerous yellow and red boxes in Fig. 3. In this particular group of complexes there is a very high degree of correlation between Eint and the various energy components, with ∣R∣ > 0.97 for all with the exception of 0.80 for the dispersion energy. The correlations with the three QTAIM quantities are all excellent as well, as is that with the intermolecular distance and the MEP on the base, all with ∣R∣ exceeding 0.80. For complexes stabilized by the pnicogen bond, the correlation coefficient between Eint and the normalized distance is 0.97. Analogous data are presented in Fig. S8 and S9 (ESI†) for the chalcogen and halogen-bonded complexes, respectively. Although not quite as good as the pnicogen bond correlations in Fig. 4, there is still a substantial improvement when compared to Fig. 3 with all three bonding types mixed together.
The MEP protocol is commonly utilized to help predict the geometry of complexes and even the strength of noncovalent interactions, especially those based on σ-hole interactions. A study by Bauza and Frontera48 of crystal fragments containing Ni, Pd and Pt atoms computed a negative MEP (from −25 to −43 kcal mol−1) above these metal atoms which reinforces our contention that these systems can be considered as full-fledged Lewis bases. Their MEPs were considerably more negative than in the systems discussed above with negative potentials in the −12 to −19 kcal mol−1 range. As in the prior work our own calculations found intermolecular distances that were smaller than the vdW radius sums. A more recent publication49 computed halogen bond energies of Pt(II), Ni(II) and Pd(II) in square planar systems in the range between 2.5 and 6.4 kcal mol−1 when the coordinates were extracted directly from crystal coordinates. These quantities are somewhat smaller than those computed here, attributed in part to our use of optimized distances. Nonetheless, their data were consistent with our findings that Pt binds more tightly than does Pd. As another point of similarity, the electron density at the BCP connecting the halogen atom to M is comparable to the values obtained here. A partitioning of their total interaction energies suggested a significant orbital contribution (37%) when the Pt dz2 orbital donates charge to iodopentafluorobenzene. The results obtained at the PBE0-D3/def2-TZVP level for models constructed based on X-ray structures are comparable to those obtained in our work.
Ivanov et al. recently described the behavior of metals as σ-hole acceptors in crystal structures taken from the CSD database.45 The authors identified several crystal structures which contained X⋯dz2 [PdII] and X⋯dz2 [PtII] halogen bonds. The Br⋯Pt distance (3.365 Å) is slightly shorter and its directionality is subtly higher than that of I⋯Pt (3.439 Å) in refcodes LIHMIB87 and UKEKIG88 structures, respectively. The study suggested that the Br⋯Pt interaction is slightly weaker than I⋯Pt. The I⋯Pt interaction can be as strong as 15.0 kcal mol−1 while the energy of the Br⋯Pd contact reaches up to 9.6 kcal mol−1, a difference attributed to both the stronger nucleophilic character of Pt and deeper σ-hole at the I center.
In the study by Boyarskiy89 several trans-[MCl2(NCNMe2)2]·2CHX3 (M = Pd, Pt and X= Br, I) complexes were investigated, and the metallic center was found to be a σ-hole acceptor. QTAIM results89 revealed the presence of BCPs in trans-[MCl2(NCNMe2)2]·2CHX3 complexes between Pd and Br or I atoms (ρ at BCP varies between 0.012 and 0.013 au). Concerning the results reported in the current work for complexes with Pd, the ρ at BCPs varies between 0.010 and 0.050 au (see Tables S5 and S6, ESI†). The relationship between a classical C–I⋯I XB and I⋯[dz2-PtII] metal-involving XB in trans-[PtI2(NCN(CH2)5)2]·2CHI3 was discussed by Eliseeva et al.53 In this complex, the source of stabilization is the charge transfer from the metal dz2 orbital. Therefore, the noted interactions are designated as C–I⋯[dz2-PtII] metal-involving XBs, where PtII acts as a dz2-nucleophile. DFT results obtained at the PBE-D3/jorge-TZP-DKH level of theory showed that the Pt⋯I distance is equal to 3.5131 Å which is longer than the I⋯Pt distances computed here which are in turn all less than 3.0 Å. QTAIM analysis placed these interactions in the same magnitude as typical I⋯I dihalogen bonds in the supramolecular assembly.
In the work of Freindorf et al.52 I2 and d8 transition-metal van Koten's pincer complexes were studied. NBO analysis revealed that the largest interorbital energy transfer from the dz2 Pt orbital to σ*(I–I) reached 55.0 kcal mol−1. Binding energies for all 20 studied complexes fluctuated between 11 and 36 kcal mol−1. In our own calculations, the Cl2(Phen)Pt⋯IF complex is characterized by similar E2 of 54.2 kcal mol−1, albeit with a different interaction energy. Other systems exhibiting a I⋯Pd motif50 include trans-(O,C)-[Pd(ppz)(μ-O∩N)]2 and trans-(E,N)-[Pd(ppz)(μ-E∩N)]2 where (E∩N is a deprotonated 2-substituted pyridine; E = S, Se; Hppz = 1-phenylpyrazole). The I⋯Pd and I⋯E interactions had similar strength but the former was controlled mainly by dispersion forces while the latter by the electrostatic component. I⋯Pt interactions have been found by Bulatova et al.90 in the PtX2COD⋯1,4-diiodotetrafluorobenzene (X = Cl, Br, I, COD= 1,5-cyclooctadiene) adducts. Metal-involved interactions acted in this case as secondary contacts as they were weaker than dihalogen bonds according to the combination of ELF plus QTAIM analyses. The ratio of the I⋯Pt distances versus the sum of the van der Waals radii of the iodine and platinum atoms was more than 1.
A chalcogen bond with a metal nucleophile has been investigated by Rozhkov et al.56 in two isostructural cocrystal complexes between [Pt(ppy)(acac)] or [Pt(ppy)(tmhd)] and 2·2/3(4-NC5F4)2Se and 2·(4-NC5F4)2Te units. PBE0D3BJ calculations of the X-ray structures found NBO values of E(2) concerning donation from the Pt dz2 orbital to σ*(Se/Te-C) in the range of 3.6 to 11 kcal mol−1, with total interaction energies between 7 and 12 kcal mol−1. A study by Burguera et al. indicated that Sb also can act as an electron donor in the square planar Pt(II)-complexes creating a metal-assisted pnicogen bond scheme.57 The NBO results for square planar complexes revealed a small orbital contribution (E2 = 1.07 kcal mol−1) due to a donation from the Pt dz2 orbital to σ*(Sb–Cl). The QTAIM and NCI analyses confirmed the existence of a Pt⋯Sb interaction that is comparable to our complexes with platinum. The QTAIM data reported in that work are in agreement with values in the current study (see Tables S5 and S6, ESI†).
Footnote |
† Electronic supplementary information (ESI) available. See DOI: https://doi.org/10.1039/d3cp03171c |
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