Open Access Article
Noha Nabil,
Omima M. I. Adly
,
Magdy Shebl
,
Ali Taha
and
Fatma Samy
*
Department of Chemistry, Faculty of Education, Ain Shams University, Roxy, Cairo 11566, Egypt. E-mail: noha.nabil1986@yahoo.com; omima_adly@edu.asu.edu.eg; magdyshebl@edu.asu.edu.eg; alitaha@edu.asu.edu.eg; fatmasame@edu.asu.edu.eg; Fax: +20 0222581243; Tel: +20 1096418414
First published on 19th October 2022
Reactions of 3-formylchromone (L) with Ni(II) and Co(II) ions having different anions (acetate, perchlorate, nitrate, and chloride) yielded a series of binary and ternary octahedral complexes with the general formula [MLnL′mXy(S)a]Zy·bS, where M = Ni or Co, n = 1–3, L′ = auxiliary ligand = 8-hydroxyquinoline or 1,10-phenanthroline, m = 1 or 2, X = acetate or chloride, y = 0 or 2, S = H2O or MeOH, a = 0–2, Z = nitrate or perchlorate and b = 0–1.5. Elemental and thermal analyses and infra-red, electronic, mass, magnetic susceptibility and molar conductivity measurements were successfully utilized to characterize the structures of the chromone complexes. The chromone ligand acts as a neutral bidentate ligand through its formyl and γ-pyrone oxygen atoms. The obtained complexes were formed with molar ratios 1
:
2 and 1
:
3 M
:
L for the binary and 1
:
2
:
1 and 1
:
1
:
1 M
:
L
:
L′ for the ternary complexes. The kinetic parameters of the thermal degradation steps were estimated and explained using the Coats–Redfern equations. The synthesized complexes showed antimicrobial activity with higher activity toward Candida albicans and Bacillus subtilis. Docking studies showed good agreement with the antimicrobial activity. Molecular modeling of the synthesized complexes was performed using Hyperchem at the PM3 level and the calculated structures correlate with the experimental data.
Mixed-ligand complexes have lately gained considerable attention due to their important roles in biological processes.11 The presence of heterocyclic nitrogen donor ligands, such as 1,10-phenanthroline or oxine (8-hydroxyquinoline), has been shown to significantly enhance the various pharmacological impacts of metal complexes.12
Nickel and cobalt elements are generally required for life as nickel is involved in a variety of enzymes13 and cobalt in vitamin B-12 and a number of therapeutics.14 Their complexes have different biological applications;15–19 some are used as cisplatin alternatives in cancer treatment20 and some as catalysts in the oxygenation processes of organic molecules.21
In an extension of our continuing interest in the synthesis, spectroscopic characterization and biological activity of chromone-based ligands and their complexes,22 a series of binary and ternary Ni(II)- and Co(II)-3-formylchromone complexes were synthesized and successfully characterized. Different Ni(II)- and Co(II)-salts (acetate, perchlorate, nitrate, and chloride) were employed to synthesize binary complexes, while auxiliary ligands (Scheme 1), such as N,O-donor oxine or N,N-donor 1,10-phenanthroline, were utilised to synthesize mixed-ligand complexes. Various analytical and spectroscopic techniques were used to characterize the prepared complexes. Theoretical studies were performed on Hyperchem 7.52 software at the PM3 level and the theoretical findings were compared and correlated with the experimental data. The ligand and its complexes were tested for antibacterial activity.
![]() | ||
| Scheme 1 Synthesis of 3-formylchromone and auxiliary ligands 8-hydroxyquinoline and 1,10-phenanthroline. | ||
Geometrical optimization and conformation analysis were performed using the PM3 forcefield as implemented in Hyperchem 7.52 (ref. 28) in order to acquire a better understanding of the molecular structure of the chromone ligand and its complexes.
| No. | Reaction | Complex | Color | Yield (%) | M. P. (°C) | Elemental analysis, % found/(calc.) | |||
|---|---|---|---|---|---|---|---|---|---|
| M. F. [F. Wt] | C | H | N/S | M | |||||
| a Not determined. | |||||||||
| 1 | L + Ni(OAc)2·4H2O | [Ni(L)2(OAc)2]·H2O | Light green | 50 | >300 | 52.86 | 4.52 | — | 10.70 (10.81) |
| C24H20O11Ni [543.13] | (53.08) | (3.71) | |||||||
| 2 | L + Ni(NO3)2·6H2O | [Ni(L)3](NO3)2 · 0.5MeOH | Light green | 48 | 253–257 | 52.82 | 3.30 | 4.10 | 7.92 |
| C30.5H20N2O15.5Ni [721.21] | (50.80) | (2.80) | (3.88) | (8.14) | |||||
| 3 | L + Ni(ClO4)2·6H2O | [Ni(L)2(H2O)2](ClO4)2·H2O | Green | 45 | a | 36.41 | 2.30 | — | a |
| C20H18O17Cl2Ni [ 659.97] | (36.40) | (2.75) | (8.90) | ||||||
| 4 | L + NiCl2.6H2O | [Ni(L)2Cl2(H2O)2] | Pale lemon | 83 | >300 | 50.01 | 2.90 | — | 12.10 |
| C20H12O6Cl2Ni [ 477.93] | (50.26) | (2.53) | (12.28) | ||||||
| 5 | L + Ni(NO3)2·6H2O + 8-HQ | [Ni(L)(8-HQ)2]·1.5H2O | Dark green | 57 | >300 | 60.80 | 3.73 | 5.60 | 10.40 |
| C28H21N2O6.5Ni [548.20] | (61.35) | (3.86) | (5.11) | (10.71) | |||||
| 6 | L + Ni(NO3)2·6H2O + Phen | [Ni(L)(Phen)(H2O)(MeOH)](NO3)2 | Pale green | 45 | 156 | 47.30 | 3.87 | 7.60 | 9.61 |
| C23H19N3O12Ni [588.13] | (46.97) | (3.26) | (7.14) | (9.98) | |||||
| 7 | L + Co(OAc)2·4H2O | [Co(L)2(OAc)2]·1.5H2O | Light orange | 47 | >300 | 52.44 | 4.14 | — | 10.30 |
| C24H21O11.5Co [552.36] | (52.19) | (3.83) | (10.67) | ||||||
| 8 | L + Co(NO3)2·6H2O | [Co(L)3](NO3)2·MeOH | Orange | 61 | >300 | 50.90 | 3.40 | 3.40 | 7.70 |
| C31H22N2O16Co [737.46] | (50.49) | (3.01) | (3.80) | (7.99) | |||||
| 9 | L + CoCl2·6H2O | [Co(L)2Cl2] | Orange | 40 | >300 | 50.70 | 3.00 | — | 12.10 |
| C20H12O6Cl2Co [478.15] | (50.24) | (2.53) | (12.33) | ||||||
| 10 | L + Co(NO3)2·6H2O + 8-HQ | [Co(L)(8-HQ)2]·1.5H2O | Dark brown | 87 | >300 | 60.90 | 3.75 | 5.70 | 10.50 |
| C28H21N2O6.5Co [548.42] | (61.32) | (3.86) | (5.11) | (10.75) | |||||
| 11 | L + Co(NO3)2·6H2O + Phen | [Co(L)(Phen)(MeOH)2](NO3)2 | Rose | 50 | 130 | 48.10 | 3.77 | 7.31 | 9.65 |
| C24H21N3O12Co [602.38] | (47.85) | (3.51) | (6.98) | (9.78) | |||||
O), respectively, of the chromone ligand exhibited red shifts in the complexes, revealing the involvement of these groups in complexation.29 The extent of carbonyl coordination could be seen by the negative slope of the linear correlation of ΔEgab, which is analogous with the stability of the complex (vide infra), versus the stretching frequency of carbonyl. For complexes 1, 3, 5, 8, and 11, ΔEgab (eV) = 65.2–0.0367 ν(C
O)/cm−1, r = 0.96; i.e., as the extent of carbonyl coordination with the metal ion increases, the carbonyl bond is elongated and the frequency shifts lower, as shown by the negative slope. (iii) Participation of the anions and their modes of bonding was investigated using the infra-red spectral data. The acetato-complexes (1 and 7) displayed new bands at 1493 and 1490 (1) and 1318 and 1319 cm−1 (7), which may be respectively attributed to the νas(COO−) and νs(COO−) of the acetate group.30 The separation between the two bands, Δν = (νas − νs), demonstrates the monodentate nature of the acetate group.31 In complexes 2, 6, 8 and 11, the new bands observed in the range 1425–1447 cm−1 may be those of the ionic nitrate group.32 In complex 3, the new bands observed at 1086 and 627 cm−1 may be related to the ν3 and ν4 vibrations, respectively, of the ionic perchlorate group.33 The direct coordination of the acetate anion as well as the ionic nature of the nitrate and perchlorate anions is supported by molar conductivity data (see Section 3.2). (iv) The spectra of ternary complexes (5, 6, 10 and 11) displayed new bands in the range 1501–1518 cm−1 which may be ascribed to the coordination of the C
N group of the 8-HQ or 1,10-Phen ligands to the nickel or cobalt.34 (v) The new bands observed in the ranges 501–567 and 424–450 cm−1 may be attributed to ν(Ni- or Co–O) and ν(Ni- or Co–N), respectively.35,36
| No. | Complex | IR spectra (cm−1) | |||||
|---|---|---|---|---|---|---|---|
| ν(OH) | ν(HC O) |
ν(C O) |
ν(M–O) | ν(M–N) | Other bands | ||
| L | — | 1694 | 1643 | — | — | — | |
| 1 | [Ni(L)2(OAc)2]·H2O | 3535 | 1629 | 1606 | 528 | — | 1493 νas(COO−), 1318 νs(COO−); (monodentate OAc−) |
| 2 | [Ni(L)3](NO3)2·0.5MeOH | 3296 | 1628 | 1607 | 528 | — | 1447; ν(NO3−) (ionic) |
| 3 | [Ni(L)2(H2O)2](ClO4)2·H2O | 3382 | 1669 | 1618 | 509 | — | 1086, 627; ν(ClO4−) (ionic) |
| 4 | [Ni(L)2Cl2(H2O)2] | 3390 | 1632 | 1606 | 527 | — | |
| 5 | [Ni(L)(8-HQ)2]·1.5H2O | 3385 | 1629 | 1581 | 501 | 450 | 1504; ν(C N) 8-HQ |
| 6 | [Ni(L)(Phen)(H2O)(MeOH)](NO3)2 | 3357 | 1673 | 1619 | 567 | 428 | 1427; ν(NO3−) (ionic), 1518; ν(C N) Phen |
| 7 | [Co(L)2(OAc)2]·1.5H2O | 3523 | 1625 | 1606 | 528 | — | 1490 νas(COO−), 1319 νs(COO−); (monodentate OAc−) |
| 8 | [Co(L)3](NO3)2·MeOH | 3523 | 1626 | 1605 | 528 | — | 1446; ν(NO3−) (ionic) |
| 9 | [Co(L)2Cl2] | 3521 | 1628 | 1605 | 528 | — | |
| 10 | [Co(L)(8-HQ)2]·1.5H2O | 3385 | 1633 | 1604 | 539 | 424 | 1501; ν(C N) 8-HQ |
| 11 | [Co(L)(Phen)(MeOH)2](NO3)2 | 3309 | 1646 | 1613 | 505 | 427 | 1425; ν(NO3−) (ionic), 1517; ν(C N) Phen |
:
1 electrolytes (complexes 2, 3, 6, 8 and 11) with molar conductance values in the range 103.2–125 Ω−1 cm2 mol−1.37 This finding agrees with the weak coordinating capability of the nitrate and perchlorate anions as compared to the strong coordinating capability of the acetate anion. Furthermore, this finding is in agreement with the infrared spectral data (see Section 3.1), illustrating the coordinated nature of the acetate group and the ionic nature of the nitrate and perchlorate groups.
| No. | Complex | Electronic spectral bandsa (nm), λmaxa (nm)/(εmax, L cm−1 mol−1) | μeff (B.M.) | Conductancea (Ω−1 cm2 mol−1) |
|---|---|---|---|---|
| a Solutions in DMF (10−3 M).b Nujol mull. | ||||
| L | 271 (4340), 353 (4700), 387 (3415) | — | — | |
| 1 | [Ni(L)2(OAc)2]·H2O | (500 sh)b | 2.80 | 10.6 |
| 2 | [Ni(L)3](NO3)2 · 0.5MeOH | (500 sh, 613 sh)b | 3.20 | 106.3 |
| 3 | [Ni(L)2(H2O)2](ClO4)2·H2O | (470 sh, 504, 605sh)b | 2.83 | 125.0 |
| 4 | [Ni(L)2Cl2(H2O)2] | (400, 502, 630)b | 2.43 | 18.5 |
| 5 | [Ni(L)(8-HQ)2]·1.5H2O | (493, 693)b | 2.00 | 44.2 |
| 6 | [Ni(L)(Phen)(H2O)(MeOH)](NO3)2 | (504, 605)b | 2.30 | 122.8 |
| 7 | [Co(L)2(OAc)2]·1.5H2O | (505 sh)b | 4.74 | 9.5 |
| 8 | [Co(L)3](NO3)2·MeOH | (510)b | 5.21 | 103.2 |
| 9 | [Co(L)2Cl2] | (532 sh)b | 4.34 | 6.40 |
| 10 | [Co(L)(8-HQ)2]·1.5H2O | (488)b | 2.00 | 44.8 |
| 11 | [Co(L)(Phen)(MeOH)2](NO3)2 | (500 sh)b | 3.86 | 108.1 |
The magnetic moment values of the chromone cobalt(II) complexes (except 9–11) are in the range 4.74–5.21 B.M., consistent with octahedral cobalt(II) complexes (4.8–5.2 B.M.).38 The lower values (Table 3) of complexes 9–11 could be attributed to antiferromagnetic interaction.41 The electronic spectra of cobalt(II) complexes revealed a band in the 488–532 nm range which might be attributed to the 4T1g → 4T1g(P) transition in an octahedral geometry.31,39 The negative slope of ΔEgab with λmax, as ΔEgab is known to increase with the increasing stability of complexes, leads to a decreasing in λmax, where ΔEgab = 8.35 (0.4251)–0.00443 (0.0007426) λmax, r = 92.2%, for complexes 1–4 and 11.
| Complex | Temperature range (°C) | % Wt loss | Lost fragment (no. of molecules) |
|---|---|---|---|
| Found/(calc.) | |||
| [Ni(L)3](NO3)2·0.5MeOH (2) | 43–132 | 1.67/(2.22) | 0.5MeOH (solv.) |
| [Ni(L)(8-HQ)2]·1.5H2O (5) | 45–142 | 4.27/(4.93) | 1.5H2O (hyd.) |
| [Ni(L)(Phen)(H2O)(MeOH)](NO3)2 (6) | 42–116 | 5.93/(5.44) | 1MeOH (coord.) |
| 116–156 | 2.97/(3.06) | 1H2O (coord.) | |
| 156–336 | 21.1/(21.40) | 2HNO3 | |
| [Co(L)2(OAc)2]·1.5H2O (7) | 45–138 | 5.10/(4.89) | 1.5H2O (hyd.) |
| 138–309 | 21.6/(21.72) | 2AcOH | |
| [Co(L)(8-HQ)2]·1.5H2O (10) | 44–117 | 4.34/(4.92) | 1.5H2O (hyd.) |
The initial degradation step of the chromone complexes observed in the range 42–142 °C corresponds to the elimination of solvated molecules. The second degradation step in the range 116–309 °C agrees with the elimination of coordinated water or acetic acid molecules. In the case of complex 6, the third degradation step in the range 156–336 °C corresponds to the elimination of two nitric acid molecules. The decomposition processes of complex 6 are summarized in Scheme 4.
Furthermore, using the Coats–Redfern equations,42 the order n and activation parameters of the major degradation processes of the metal–chromone complexes were derived from the TG thermograms and the kinetic parameters are tabulated in Table 5. Based on the data in Table 5, it is possible to conclude the following points: (i) the decomposition processes are endothermic, as evidenced from the +ve ΔH values. (ii) The autocatalytic effect of nickel or cobalt ions on the thermal degradation of the complexes and the non–spontaneous processes is indicated by ΔG values that are comparatively low and have a +ve sign.43 (iii) ΔS values for complexes are -ve, demonstrating that the activated complex is more ordered than the reactants and/or the reactions are slow.44 (iv) In the ternary cobalt–phen complex (6), the value of activation energy E for the second stage of degradation is smaller than that of the first stage, demonstrating that the rate of decomposition of the second stage is higher than that of the first.45
| Complex | Step | n order | T (K) | A (S−1) | Δ E (kJ mol−1) | ΔH (kJ mol−1) | ΔS (kJ mol−1 K−1) | ΔG (kJ mol−1) |
|---|---|---|---|---|---|---|---|---|
| [Ni(L)3](NO3)2·0.5MeOH (2) | First | 1 | 349 | 2.13 × 106 | 1.0267 | −1.87 | −0.190 | 64.68 |
| [Ni(L)(8-HQ)2]·1.5H2O (5) | First | 1 | 356 | 9.75 × 103 | 29.160 | 26.20 | −0.290 | 130.50 |
| [Ni(L)(Phen)(H2O)(MeOH)](NO3)2 (6) | First | 1 | 367 | 2.76 × 1013 | 106.09 | 103.0 | 2.37 × 10−3 | 102.16 |
| Second | 1 | 404 | 1.14 × 106 | 64.650 | 61.25 | −0.139 | 117.37 | |
| [Co(L)2(OAc)2]·1.5H2O (7) | First | 1 | 363 | 1.9 × 103 | 1.0816 | −1.94 | −0.192 | 67.76 |
| [Co(L)(8-HQ)2]·1.5H2O (10) | First | 0 | 353 | 2.57 × 109 | 84.160 | 81.20 | −0.074 | 107.37 |
![]() | ||
| Fig. 4 (a) Mass spectrum of the complex [Ni(L)2Cl2(H2O)2] (4). (b) Mass spectrum of the complex [Ni(L)(Phen)(H2O)(MeOH)](NO3)2 (6). | ||
Based on the above interpretation, structures of the binary and ternary metal–chromone complexes are represented in Schemes 2 and 3.
![]() | ||
| Scheme 4 Thermal degradation pattern of complex 6, [Ni(L)(Phen)(H2O)(MeOH](NO3)2 in the range 42–336 °C. | ||
| Organism | Meanb of zone diameter, nearest whole mm | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Gram-positive bacteria | Gram-negative bacteria | Yeast and fungic | |||||||||||
| Staphylococcus aureus (ATCC 25923) | Bacillus subtilis (ATCC 6635) | Salmonella typhimurium (ATCC 14028) | Escherichia coli (ATCC 25922) | Candida albicans (ATCC 10231) | Aspergillus fumigatus | ||||||||
| Sample | Concentration | 1 mg ml−1 | 0.5 mg ml−1 | 1 mg ml−1 | 0.5 mg ml−1 | 1 mg ml−1 | 0.5 mg ml−1 | 1 mg ml−1 | 0.5 mg ml−1 | 1 mg ml−1 | 0.5 mg ml−1 | 1 mg ml−1 | 0.5 mg ml−1 |
| a — = no effect, L: low activity = mean of zone diameter ≤ 1/3 of mean zone diameter of control, I: intermediate activity = mean of zone diameter ≤ 2/3 of mean zone diameter of control, H: high activity = mean of zone diameter > 2/3 of mean zone diameter of control.b Calculated from 3 values.c Identified on the basis of routine cultural, morphological and microscopic characteristics.d Chloramphenicol in the case of Gram-positive bacteria, cephalothin in the case of Gram-negative bacteria and cycloheximide in the case of fungi. | |||||||||||||
| L | 22 I | 19H | 31H | 27H | 29H | 26H | 24 I | 20H | 43H | 38H | 25 I | 20H | |
| [Ni(L)2(OAc)2]·H2O (1) | 9 L | 8L | 26H | 23H | 15I | 12I | 17I | 15I | 26H | 23H | 25H | 22H | |
| [Ni(L)3](NO3)2·0.5MeOH (2) | 10L | 9L | 25H | 21H | 11L | 9L | 15I | 12I | 24H | 20H | 26H | 22H | |
| [Ni(L)2(H2O)2](ClO4)2·H2O (3) | — | — | 25H | 22H | 11L | 8L | 21I | 18H | 24H | 19H | 22I | 18I | |
| [Ni(L)2Cl2(H2O)2] (4) | 9L | 7L | 26H | 23H | 9L | 7L | 16I | 11I | 25H | 19H | 20I | 16I | |
| [Ni(L)(8-HQ)2]·1.5H2O (5) | — | — | — | — | — | — | — | — | — | — | — | — | |
| [Ni(L)(Phen)(H2O)(MeOH)](NO3)2 (6) | 11L | 8L | 26H | 22H | — | — | 11L | 9L | 24H | 19H | 18I | 16I | |
| [Co(L)2(OAc)2]·1.5H2O (7) | 9 L | 8L | 20I | 18H | 11L | 9L | 12I | 10I | 24H | 22H | 16I | 14I | |
| [Co(L)3](NO3)2·MeOH (8) | 11L | 8L | 21I | 18H | 10L | 8L | 13I | 10I | 24H | 20H | 18I | 14I | |
| [Co(L)2Cl2] (9) | — | — | 22I | 18H | 8L | 7L | 14I | 10I | 20I | 16I | 27H | 23H | |
| [Co(L)(8-HQ)2]·1.5H2O (10) | — | — | — | — | — | — | — | — | — | — | — | — | |
| [Co(L)(Phen)(MeOH)2](NO3)2 (11) | 23I | 20H | 23I | 18H | 11L | 9L | 15I | 11I | 22I | 20H | 27H | 24H | |
| Controld | 35 | 26 | 35 | 25 | 36 | 28 | 38 | 27 | 35 | 28 | 37 | 26 | |
It has been reported that different parameters, including the characters of the chelating agent and its chelating donor atoms, the character of the metal ion, the geometrical arrangement of the complex, solubility, and other characteristics, have a major impact on the antibacterial activity exhibited by a compound.46
| Compounds | Ligand | Receptor | Interaction | Distanceb | Ea | |||
|---|---|---|---|---|---|---|---|---|
| a kcal mol−1.b Å | ||||||||
| Ligand | O7 | NZ | LYS | 9 | (B) | H-Acceptor | 2.98 | −0.8 |
| O11 | MG | MG | 159 | (B) | Coordinate | 2.37 | −1.9 | |
| O14 | MG | MG | 159 | (B) | Coordinate | 2.29 | −1.7 | |
| 6-Ring | ND2 | ASN | 112 | (B) | Pi-H | 4.51 | −2.4 | |
| [Ni(L)3](NO3)2 · 0.5MeOH (2) | O28 | NZ | LYS | 9 | (B) | H-Acceptor | 2.95 | −18.0 |
| O43 | ND2 | ASN | 112 | (B) | H-Acceptor | 3.19 | −2.1 | |
| 6-Ring | NH1 | ARG | 102 | (B) | Pi-cation | 3.56 | −0.8 | |
| [Ni(L)(Phen)(H2O)(MeOH)](NO3)2 (6) | O30 | NE2 | HIS | 52 | (B) | H-Acceptor | 2.89 | −14.0 |
| Ni29 | MG | MG | 159 | (B) | Ionic | 1.52 | −28.5 | |
| [Co(L)3](NO3)2·MeOH (8) | O28 | NZ | LYS | 9 | (B) | H-Acceptor | 2.97 | −18.6 |
| O43 | ND2 | ASN | 112 | (B) | H-Acceptor | 3.12 | −2.8 | |
| [Co(L)(Phen)(MeOH)2](NO3)2 (11) | O30 | NE2 | HIS | 52 | (B) | H-Acceptor | 3.40 | −1.7 |
| CO29 | MG | MG | 159 | (B) | Ionic | 1.47 | −30.3 | |
The ligand (Fig. 6a) formed three bonds with amino acid residues; one of them is the H-acceptor bond between O7 of L and LYS 9 (2.98 Å, −0.8 kcal mol−1). The second and third bonds are coordinate bonds between O11 and O14 of L and MG 159 (2.37 Å, −1.9 kcal mol−1 and 4.51 Å, −2.4 kcal mol−1, respectively).
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| Fig. 6 (a) 2D diagram of ligand interaction with S. aureus nucleoside diphosphate kinase, PDB ID: 3Q89. (b) 2D diagram of Ni(II)- complex 2 interaction with S. aureus nucleoside diphosphate kinase, PDB ID: 3Q89. (c) 2D diagram of Ni(II)- complex 6 interaction with S. aureus nucleoside diphosphate kinase, PDB ID: 3Q89. (d) 2D diagram of Co(II)- complex 8 interaction with S. aureus nucleoside diphosphate kinase, PDB ID: 3Q89. (e) 2D diagram of Co(II)- complex 11 interaction with S. aureus nucleoside diphosphate kinase, PDB ID: 3Q89. | ||
On the other hand, Ni(II)-complex 2 (Fig. 6b) formed three bonds. The first and second are H-acceptor bonds between O28 and O43 and LYS 9 and ASN 112 (2.95 Å, −18.0 kcal mol−1 and 3.19 Å, −2.1 kcal mol−1, respectively). The third bond is a pi-cation between the 6-ring and ARG 102 (3.56 Å, −0.8 kcal mol−1). Ni(II)-complex 6 (Fig. 6c) formed two bonds with the amino acid residues, the first being an H-acceptor bond between O30 and HIS 52 (2.89 Å, −14.0 kcal mol−1) and the second an ionic bond between Ni and MG 159 (1.52 Å, −28.5 kcal mol−1).
Co(II)-complex 8 (Fig. 6d) formed two bonds with the amino acid residues, H-acceptor bonds between O28 and O43 and LYS 9 and ASN 112 (2.97 Å, −18.6 kcal mol−1 and 3.12 Å, −2.8 kcal mol−1, respectively). Co(II)-complex 11 (Fig. 5e) formed two bonds with the amino acid residues in the active site of the protein. The first is an H-acceptor between O30 and HIS 52 (3.40 Å, −1.7 kcal mol−1). The second is an ionic bond between CO29 and MG 159 (1.47 Å, −30.3 kcal mol−1).
According to Hansch and Leo, highly lipophilic compounds will participate in the lipid interior of membranes and be retained there. A drug has low solubility with a higher log
P and has difficulty penetrating lipid membranes with a lower log
P.48 Lipophilicity (log
P) is a feature that affects absorption, solubility, distribution, excretion qualities, metabolism, and pharmacological activity; normalized B.S. and normalized C.A. rise as log
P increases.
The docking data agreed with the antimicrobial activity data of the ligand and its complexes 2, 6, 8 and 11, where the ligand has the highest antimicrobial activity and formed 4 bonds, while its complexes formed 2 or 3 bonds.
Normalized B.S.a = 2.69 + 0.0592 log P − 0.0232 refractivity + 0.0628 polarizability + 0.481μ** + 0.289w + 1.44σ |
Normalized C.A.b = 0.307 + 0.0339 log P − 0.0297 refractivity + 0.0932 polarizability − 0.105μ** − 0.134w − 0.394σ |
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| Fig. 7 (a) Optimized structure of [(L)2CoCl2] (9) using Hyperchem 7.52 at PM3 level. (b) Optimized structure of [(L)2NiCl2] (4) using Hyperchem 7.52 at PM3 level. | ||
The values of EHOMO (eV), ELUMO (eV) and Egap (eV) of the binary complexes (Table 8) that include the acetate anions increase in the following order: Ni(II)- > Co(II)-complexes. Consequently, the band gap values of the complexes are less than that of the free chromone ligand, which means that, in any excitation process, the complexes need less energy than the free ligand. These orders reveal that the stability of the complexes is in the same order of increasing Egap. On the other hand, the Egap values of the binary and ternary chlorides show the order Ni- ≫ Co-complex, but the binary nitrate and ternary complexes of phenanthroline (phen) show the trend Co- > Ni-complex and the stability decreases in the same direction. These differences in the order of Egap might arise from the unlike hard–soft acid–base interactions (HSBA).
| No. | Complex | ELUMO | EHOMO | ΔEgab | Dipole moment | ΔH | T.E complex | η | μ | σ | ω |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Ligand | −0.880 | −9.770 | 8.890 | 4.080 | −63.830 | −49 742.0 |
−4.4500 | 5.325 | −0.22 | −3.19 | |
| 1 | [Ni(L)2(OAc)2]·H2O | −1.360 | −7.528 | 6.168 | 8.494 | −550.090 | −163 798.7 |
3.0839 | −4.44415 | −0.32 | 3.2022 |
| 2 | [Ni(L)3](NO3)2·0.5MeOH | −0.724 | −6.387 | 5.663 | 2.627 | −380.629 | −173 313.0 |
2.8315 | −3.5555 | −0.35 | 2.2323 |
| 3 | [Ni(L)2(H2O)2](ClO4)2·H2O | −0.802 | −6.566 | 5.764 | 2.677 | −444.901 | −138 578.4 |
2.8817 | −3.68395 | −0.35 | 2.3548 |
| 4 | [Ni(L)2Cl2(H2O)2] | −1.527 | −6.974 | 5.447 | 10.730 | −316.125 | −138 166.6 |
2.7236 | −4.25045 | −0.37 | 3.3167 |
| 5 | [Ni(L)(8-HQ)2]·1.5H2O | −0.744 | −7.910 | 7.166 | 3.730 | −190.970 | −148 218.6 |
3.5830 | −4.327 | −0.28 | 2.6127 |
| 6 | [Ni(L)(Phen)(H2O)(MeOH)](NO3)2 | −1.628 | −5.614 | 3.986 | 10.700 | −299.620 | −135 354.6 |
1.9932 | −3.62115 | −0.50 | 3.2894 |
| 7 | [Co(L)2(OAc)2]·1.5H2O | −2.042 | −3.420 | 1.378 | 12.070 | −592.470 | −157 975.3 |
0.6892 | −2.7308 | −1.45 | 5.4101 |
| 8 | [Co(L)3](NO3)2·MeOH | −1.035 | −7.514 | 6.479 | 2.612 | −482.560 | −67 549.1 |
3.2395 | −4.2745 | −0.31 | 2.8201 |
| 9 | [Co(L)2Cl2] | −2.290 | −3.404 | 1.114 | 11.270 | −417.470 | −132 402.1 |
0.5570 | −2.847 | −1.80 | 7.2759 |
| 10 | [Co(L)(8-HQ)2]·1.5H2O | −1.208 | −3.712 | 2.504 | 4.733 | −373.310 | −142 935.1 |
1.2520 | −2.46 | −0.80 | 2.4168 |
| 11 | [Co(L)(Phen)(MeOH)2](NO3)2 | −0.783 | −6.853 | 6.070 | 6.132 | −396.250 | −133 028.5 |
3.0352 | −3.81795 | −0.33 | 2.4013 |
The heats of formation of all complexes under study are exothermic. The [Co(L)2(OAc)2]·1.5H2O complex has the most negative heat of formation (−592.47 kcal mol−1), so it is more thermodynamically stable compared to the other complexes. The complex [Ni(L)2Cl2] has the most positive heat of formation and is the least stable.
Global chemical reactivity indices such as total energy, electronic chemical potential (μ), chemical hardness (η), electrophilicity (ω), softness (σ) and dipole moment (μ) are used to describe the reactivity and stability of any chemical compound.
The dipole moment in a molecule is an important property that is mainly used to study intermolecular interactions involving nonbonded type dipole–dipole interactions, because the higher the dipole moment, the stronger the expected intermolecular interactions. Increasing the stability of the complex formation is complemented by increasing the dipole moment value (more polarity) of the complex. Table 8 reveals that the highest polarity complex is [Co(L)2(OAc)2]·1.5H2O (12.07 Deby), while the least polar complex is [Co(L)3](NO3)2·MeOH (2.61 Deby).
The reactivity of complexes is Co(II)- > Ni(II)-complexes as indicated from the hardness (η) values in Table 8.43b
Electronic chemical potential (μ) describes the charge transfer within a system in the ground state. It is defined as the negative of electro-negativity. Physically, the electronic chemical potential (μ) is defined as the tendency of electrons to escape from the equilibrium state. Compounds having greater values of chemical potential are more reactive than those with smaller electronic chemical potential. The data in Table 8 reveals that the capability of an electron to leave the complex molecule based on the chemical potential (μ) values takes the order Ni(II)- > Co(II)-complexes. Therefore, [Ni(L)2(OAc)2]·H2O complex is the strongest electrophile while [Co(L)(8-HQ)2]·1.5H2O is the strongest nucleophile.
The electrophilicity index (ω) measures the stabilization of energy when the system acquires an additional electronic charge from the environment. The data in Table 8 reveal that the most powerful electrophile is the binary [Co(L)2Cl2] complex with ω = −7.28 eV, while the weakest electrophile is the binary [Ni(L)3](NO3)2 · 0.5MeOH complex with ω = −2.23 eV. The softness (σ) of the complexes ranges from −0.28 to −1.80 eV−1.
Based on the values in Table 9, it is observed that when these ligands are coordinated with the metal ion, there is an elongation of the bond length between the above-mentioned atoms which confirms the coordination of the carbonyl oxygen with the metal ion. When the atoms are coordinated with the metal ion by donating a lone pair of electrons, there is a decrease in electron density on the coordinating atoms, hence the bond length increases in the metal complexes. A comparison of the bond lengths of the ligand and its metal complexes is demonstrated in Table 9. The bond lengths from the PM3 method for C
O of the chromone after complexation are between 1.23 and 1.50 Å, longer than that of the free ligand (1.21 Å). Moreover, the M–O bond length of the metal ion with the carbonyl group was found to be in the range 1.86–1.97 Å.
| No. | Compound | C O |
C Oγ pyrone |
M–O C |
M–O Cγ |
Other bond lengths |
|---|---|---|---|---|---|---|
| L | 1.21 | 1.22 | — | — | — | |
| 1 | [Ni(L)2(OAc)2]·H2O | 1.23 | 1.25 | 1.86 | 1.86 | M-OAC |
| 1.86–1.816 | ||||||
| 2 | [Ni(L)3](NO3)2·0.5MeOH | 1.50 | 1.50 | 1.88 | 1.89 | — |
| 3 | [Ni(L)2(H2O)2](ClO4)2·H2O | 1.50 | 1.50 | 1.876 | 1.88 | M-OH2 |
| 1.88–1.87 | ||||||
| 4 | [Ni(L)2Cl2(H2O)2] | 1.50 | 1.50 | 1.878 | 1.88 | M-Cl |
| 2.14–2.13 | ||||||
| 5 | [Ni(L)(8-HQ)2]·1.5H2O | 1.49 | 1.50 | 1.88 | 1.87 | M-8Hq |
| 1.90–1.89 | ||||||
| 6 | [Ni(L)(Phen)(H2O)(MeOH)](NO3)2 | 1.24 | 1.24 | 1.92 | 1.97 | M-10Phen, 1.80 |
| M-OHCH3, 1.29 | ||||||
| M-OH2, 2.008 | ||||||
| 7 | [Co(L)2(OAc)2]·1.5H2O | 1.29 | 1.27 | 1.87 | 1.94 | M-OAC |
| 1.88–1.86 | ||||||
| 8 | [Co(L)3](NO3)2·MeOH | 1.28 | 1.28 | 1.89 | 1.93 | — |
| 9 | [Co(L)2Cl2] | 1.25 | 1.289 | 1.90 | 1.91 | M-Cl |
| 2.21 | ||||||
| 10 | [Co(L)(8-HQ)2]·1.5H2O | 1.29 | 1.26 | 1.915 | 1.94 | M-8Hq |
| 1.90 | ||||||
| 11 | [Co(L)(Phen)(MeOH)2](NO3)2 | 1.329 | 1.34 | 1.892 | 1.86 | M-10Phen, 1.90 |
| M-OHCH3, 1.993 | ||||||
| M-OH2, 2.023 |
The charge densities on the coordinating centres and the central metal ions are tabulated in Table 10. The results show that the range of charge density is lower in the case of Co(II)-complexes (0.011 to −0.142) than the electron density on the central metal ion of Ni(II)-complexes (−0.613 to −0.898).
| No. | Complex | C O (1) |
CHO (1) | C O (2) |
CHO (2) | C O (3) |
CHO (3) | Metal | Other molecules |
|---|---|---|---|---|---|---|---|---|---|
| 1 | [Ni(L)2(OAc)2]·H2O | 0.013 | −0.016 | 0.003 | −0.013 | −0.623 | OAc = −0.168 | ||
| OAc = −0.171 | |||||||||
| 2 | [Ni(L)3](NO3)2 · 0.5MeOH | 0.013 | −0.034 | −0.010 | −0.169 | −0.001 | −0.029 | −0.731 | |
| 3 | [Ni(L)2(H2O)2](ClO4)2·H2O | −0.029 | −0.004 | 0.008 | −0.034 | −0.693 | OH2 = −0.079 | ||
| OH2 = −0.091 | |||||||||
| 4 | [Ni(L)2Cl2(H2O)2] | 0.036 | 0.003 | 0.030 | 0.001 | −0.613 | Cl = −0.199 | ||
| Cl = −0.202 | |||||||||
| 5 | [Ni(L)(8-HQ)2]·1.5H2O | −0.093 | −0.107 | −0.856 | N-8hy = 0.026 | ||||
| O-8hy = −0.129 | |||||||||
| N-8hy = 0.944 | |||||||||
| O-8hy = −0.110 | |||||||||
| 6 | [Ni(L)(Phen)(H2O)(MeOH)](NO3)2 | −0.051 | −0.138 | −0.898 | N-phen = 0.766 | ||||
| N-phen = 0.831 | |||||||||
| MeOH = −0.210 | |||||||||
| OH2 = −0.105 | |||||||||
| 7 | [Co(L)2(OAc)2]·1.5H2O | −0.22 | −0.199 | −0.145 | −0.063 | 0.011 | OAc = −0.371 | ||
| OAc = −0.441 | |||||||||
| 8 | [Co(L)3](NO3)2·MeOH | −0.209 | −0.221 | −0.207 | −0.222 | −0.207 | −0.221 | −0.012 | |
| 9 | [Co(L)2Cl2] | −0.169 | −0.050 | −0.205 | −0.121 | −0.042 | Cl = −0.424 | ||
| Cl = −0.330 | |||||||||
| 10 | [Co(L)(8-HQ)2]·1.5H2O | −0.193 | −0.273 | −0.123 | O-8hy = −0.270 | ||||
| N-8hy = 0.378 | |||||||||
| O-8hy = −0.272 | |||||||||
| N-8hy = 0.42 | |||||||||
| 11 | [Co(L)(Phen)(MeOH)2](NO3)2 | −0.178 | −0.237 | −0.142 | MeOH = −0.225 | ||||
| MeOH = −0.196 | |||||||||
| N-phen = 0.175 | |||||||||
| N-phen = 0.171 |
The data in Table 11 show the following: (i) as ΔH increases, the lengths of C
Oγ pyrone, C
O and ν(M–O) increase, but the lengths of C
Oγ–M pyrone, C
O–M and ν(C
O) decrease. (ii) The positive slope of the relationship between ELUMO and the bond lengths of C
O and C
Oγ pyrone indicates that increasing ELUMO leads to increasing stability and increasing bond lengths of C
O and C
Oγ pyrone. On the other hand, the linear correlation between the calculated EHOMO with the frequency of C
O and M–O indicates that increasing EHOMO leads to an increase in C
O and a decrease in M–O. (iii) However, increasing ΔEgab leads to increasing stability and ν(M–N) and decreasing ν(C
O) and λmax.
| No. | Equation | r% | Complexes |
|---|---|---|---|
| 1 | ΔH = 8584(1327) − 4718(697.0) LM–O Cγ |
92.0% | 2, 4, 5, 7, 8 & 9 |
| 2 | ΔH = 23 486(5801) − 12 684(3081) LM–O C |
94.4% | 1, 5, 8 & 11 |
| 3 | ΔH = −2015(216.5) + 1215(159.8) LC Oγ pyrone |
96.7% | 5, 8, 9 & 11 |
| 4 | ΔH = −2246 (74.06) + 1382(55.44) LC O |
99.7% | 1, 5, 8 & 11 |
| 5 | ΔH = −1723(190.1) + 2.51(0.3557) ν(M–O) | 94.3% | 2, 3, 6, 9 & 10 |
| 6 | ΔH = 10 442(933.4) − 6.73(0.5817) ν(C O) |
97.8% | 2, 3, 5, 10 & 11 |
| 7 | ELUMO = −12.9(2.932) + 9.17(2.281) L(C O) |
89.0% | 6, 8, 10 & 11 |
| 8 | ELUMO = −10.7(2.269) + 7.44(1.781) L(C Oγ pyrone) |
85.3% | 1, 6, 8, 10 & 11 |
| 9 | EHOMO = −138(17.45) + 0.0812(0.01082) ν(C O) |
98.3% | 1, 3 & 11 |
| 10 | EHOMO = 27.8(4.786) − 0.0589(0.008783) ν(M–O) | 97.8% | 6, 9 & 10 |
| 11 | ΔEgab = 8.35(0.4251) − 0.00443(0.0007426) λmax | 92.2% | 1–4 & 11 |
| 12 | ΔEgab = −69.2(9.483) + 0.170(0.02178) ν(M–N) | 96.8% | 1–4 & 10 |
| 13 | ΔEgab = 65.2(7.133) − 0.0367(0.004445) ν(C O) |
95.8% | 1, 3, 5, 8 & 11 |
Table 12 shows that the QSAR properties of the complexes are higher than those of the ligand, including surface area (420.91–70, 558.50–738.27), octanol–water partition coefficient (lipophilicity, log
P, −1.84 to −0.04, 0.25–2.53), volume (982.79–1330.37), refractivity (103.68–150.72), polarizability (34.54–49.48) and molecular weight (443.05–581.40). The hydration energy for the ligand (7.40 kcal mol−1) changed to −1.2 to −26.15 kcal mol−1 for its complexes.
| No. | Compound | Surface area approx. | Surface area grid | Volume | Hydration energy (kcal mol−1) | -log P |
Refractivity | Polarizability | MW |
|---|---|---|---|---|---|---|---|---|---|
| L | 277.25 | 329.02 | 508.16 | 7.40 | −0.61 | 50.43 | 17.62 | 174.16 | |
| 1 | [Ni(L)2(OAc)2]·H2O | 539.52 | 661.83 | 1184.05 | −5.40 | 1.15 | 123.91 | 42.56 | 525.11 |
| 2 | [Ni(L)3](NO3)2 · 0.5MeOH | 533.21 | 734.75 | 1317.94 | −2.24 | 1.89 | 150.72 | 49.48 | 581.18 |
| 3 | [Ni(L)2(H2O)2](ClO4)2·H2O | 420.91 | 558.50 | 982.79 | −26.15 | −0.04 | 103.68 | 34.54 | 443.05 |
| 4 | [Ni(L)2Cl2(H2O)2] | 458.21 | 585.96 | 1016.94 | −2.04 | 2.53 | 112.75 | 37.63 | 477.93 |
| 5 | [Ni(L)(8-HQ)2]·1.5H2O | 476.07 | 681.64 | 1214.83 | −7.16 | 0.52 | 143.98 | 48.95 | 521.17 |
| 6 | [Ni(L)(Phen)(H2O)(MeOH)](NO3)2 | 430.52 | 611.56 | 1085.19 | −8.78 | −1.84 | 120.70 | 41.40 | 463.13 |
| 7 | [Co(L)2(OAc)2]·1.5H2O | 535.92 | 670.61 | 1196.48 | −4.97 | 1.15 | 123.91 | 42.55 | 525.33 |
| 8 | [Co(L)3](NO3)2·MeOH | 552.44 | 738.27 | 1330.37 | −1.43 | 1.89 | 150.72 | 49.47 | 581.40 |
| 9 | [Co(L)2Cl2] | 514.62 | 604.21 | 1044.40 | −1.21 | 2.53 | 112.75 | 37.62 | 478.15 |
| 10 | [Co(L)(8-HQ)2]·1.5H2O | 647.70 | 560.06 | 1022.02 | −2.53 | 0.25 | 129.92 | 41.19 | 504.26 |
| 11 | [Co(L)(Phen)(MeOH)2](NO3)2 | 427.16 | 608.82 | 1115.62 | −4.16 | −1.59 | 125.59 | 43.23 | 477.38 |
:
2 M
:
L complexes were obtained. In the case of the NO3− anion, 1
:
3 M
:
L complexes were obtained. (iv) Ternary complexes are formed with two metal
:
ligand
:
secondary ligand molar ratios: 1
:
1
:
2 in the case of 8-hydroxyquinoline and 1
:
1
:
2 in the case of 1,10-phenanthroline. The thermodynamic parameters of the metal complexes were calculated by the Coats–Redfern method and standard thermodynamic equations using the TGA curves from the thermal degradation of the solid complexes. Biological activity and molecular modelling showed good agreement, supported by the theoretical and experimental data.
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