Open Access Article
Marco T.
Klein
a,
Bernhard M.
Krause
a,
Jörg-Martin
Neudörfl
a,
Ronald
Kühne
b and
Hans-Günther
Schmalz
*a
aUniversity of Cologne, Department of Chemistry, Greinstrasse 4, 50939 Köln, Germany. E-mail: schmalz@uni-koeln.de
bLeibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP), Robert-Rössle-Strasse 10, 13125 Berlin, Germany
First published on 14th November 2022
A synthesis of the new tetracyclic scaffold ProM-19, which represents a XPP tripeptide unit frozen in a PPII helix conformation, was developed. As a key building block, N-Boc-protected ethyl (1S,3S,4R)-2-azabicyclo[2.2.1]hept-5-ene-2-carboxylate was prepared through a diastereoselective aza-Diels–Alder reaction and subsequent hydrogenolytic removal of the chiral N-1-phenylethyl substituent under temporary protection of the double bond through dihydroxylation and reconstitution by Corey–Winter olefination. The target compound Boc-[ProM-19]-OMe was then prepared via subsequent peptide coupling and Ru-catalyzed ring-closing metathesis steps employing (S)-N-Boc-allylgylcine and cis-5-vinyl-proline methyl ester as additional building blocks. In addition, Ac-[2-Cl-Phe]-[Pro]-[ProM-19]-OMe was prepared by solution phase peptide synthesis as a potential ligand for the ena-VASP EVH1 domain.
Following the concept of conformational preorganization, we have previously synthesized tricyclic diproline mimetics, such as ProM-19 and ProM-2,10 (as Pro-Pro equivalents rigidified in a PP2 helix conformation) by introduction of a Z-vinylidene bridge between the two pyrrolidine rings (Fig. 2).
We also demonstrated the value of these scaffolds by successfully developing small molecule ligands for the EVH-1 domain.11 For instance, the compound Ac-[2-Cl-Phe]-[ProM-2]-[ProM-1]-OMe (Fig. 3) was shown to selectively bind to the Ena/VASP EVH1 domain with nanomolar affinity and thereby to impair invasion and extravasation of breast cancer cells.12
Having successfully synthesized and applied tricyclic diproline mimetics such as ProM-1 and ProM-2, we now asked ourselves whether it would be possible to further expand our toolbox of geometrically defined scaffolds by synthesizing the tetracyclic system ProM-19 (shown in black in Fig. 3) which was designed as an N-terminally extended analog of ProM-1 representing a tripeptide mimetic rigidified in a PPII helix conformation. However, due the structural complexity of this molecule, its synthesis represented a non-trivial task.
We here describe the stereocontrolled synthesis of the new scaffold ProM-19 (in form of the protected derivative 1) and of the novel ligand Ac-[2-Cl-Phe]-[Pro]-[ProM-19]-OMe derived thereof, which according to docking simulations would also perfectly fit to the surface of the Ena/Vasp EVH1 domain in the canonical fashion (Fig. 3).12
While the protected cis-5-vinyl-proline 5 was available in our laboratory14 and the allyl-glycine derivative 3 could be prepared in enantiomerically pure form via known methods,15 we considered a Diels–Alder approach as a most attractive approach to construct the 2-aza-bicyclo[2.21]heptane ring system of building block 4.16
The synthesis of 4 commenced with an asymmetric aza-Diels–Alder reaction according to Waldmann16a (Scheme 2). Best results were obtained when the imine 6, prepared in quantitative yield from ethyl glyoxylate and (R)-1-phenylethylamine (Na2CO3, toluene, r.t., 1.5. h), was reacted with cyclopentadiene in the presence of trifluoroacetic acid and catalytic amounts of water.16b Under optimized conditions, the reaction proceeded smoothly even on a 10 g scale to give the desired exo-product 7a in 64% isolated yield after chromatographic purification, besides 7% of the endo-diastereomer 7b.
Since direct hydrogenolytic cleavage of the chiral N-substituent was not feasible in the presence of the C
C double bond, we decided to temporarily protect this bond by dihydroxylation.17 Thus, 7a was treated with K3Fe(CN)6 and K2CO3 in the presence of 0.025 mol% of K2OsO2 to give the exo-diol 8 as a single diastereomer in 95% yield (Scheme 3). At this stage, hydrogenolysis of the benzylic C–N bond with Pd/C in MeOH was achieved in good yield, and it was found to be advantageous to pass a hydrogen stream directly through the reaction mixture. After filtration of the product solution through a pad of Celite and removal of the solvent, the crude amine was dissolved in dichloromethane and treated directly with Boc2O, after which the N-Boc-protected diol 9 was obtained in 87% yield (2 steps). This compound showed a remarkable tendency to form massive crystals from CH2Cl2 with an edge length of up to 10 mm. Crystallographic analysis confirmed its relative and absolute configuration (Fig. 4).
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| Scheme 3 Synthesis of the 3,5-divinylproline derivative 13 as a synthetic equivalent of the aza-bicyclic building block 4. | ||
Having successfully accomplished the exchange of the chiral N-phenylethyl substituent by a Boc protecting group, we employed a Corey–Winter reaction18 to reconstitute the double bond. For this purpose, the diol 9 was first reacted with thiophosgene and DMAP, and the resulting cyclic thiocarbonate 10 was subsequently heated with trimethyl phosphite to afford the expected olefin 11 in 72% yield over two steps. When attempting to saponify the ester function of 11, this compound surprisingly proved to be highly sensitive towards aqueous alkali, and we were unable to prepare the targeted aza-bicyclic building block 4 with a free carboxylic acid function. For this reason, we converted 9 into the 3,5-divinylproline derivative 12 by Ru-catalyzed ring-opening metathesis in the presence of ethylene.19 And unlike 11, the ester function in 12 (obtained in 70% yield) could now be readily hydrolyzed with aqueous LiOH, yielding the acid 13 in quantitative yield, which in terms of the planned strategy (Scheme 1) represents a synthetic equivalent of 4. Noteworthy, an attempt to achieve the conversion of 9 to 12 through periodate cleavage of the diol17b and subsequent Wittig olefination gave rise to a mixture of diastereomers, obviously due to enolization/epimerization at the stage of the dialdehyde.
With the ring-opened acid building block 13 (instead of 4) in our hands, we continued the synthesis (Scheme 4) by reacting 13 with the known 5-vinylproline ester 5
14 under proven peptide coupling conditions (PyBOP, DIPEA).20 Ring closing metathesis of the resulting trivinyldiproline derivative 14 then proved surprisingly difficult. However, repeated addition of small amounts of the Grubbs II catalyst (20 mol% in total) to a dilute solution of 14 in dichloromethane over a period of 48 hours succeeded in achieving a satisfactory conversion, and the tricyclic product 15 was obtained in 58% yield.
![]() | ||
| Scheme 4 Synthesis of the designed tetracyclic tripeptide mimetic Boc-[ProM-19]-OMe (1) and its further transformation to the potential EVH-1 ligand 20. | ||
The tricycle 15, which formally represents a vinyl-ProM-1 derivative, was then treated with TMSOTf to cleave off the Boc protecting group and the resulting amine was directly coupled to (S)-N-Boc-allylglycine (3) in the presence of HATU, DIPEA.21 The subsequent cyclization of 15 through ring-closing metathesis then proceeded smoothly in the presence of the Grubbs II catalyst in hexafluorobenzene to afford the targeted ProM-19 derivative 1 in 61% overall yield from 15 (3 steps).
The final conversion of 1 into ligand 20 (Ac-[2-Cl-Phe]-[Pro]-[ProM-19]-OMe) commenced with the removal of the Boc group (TMSOTf) and HATU-mediated coupling with N-Boc-proline. After renewed removal of the Boc protecting group, the 2-chlorophenylalanine unit was attached employing the Fmoc-protected pentafluorophenyl ester 18 as a reagent.22 Noteworthy, the corresponding N-acetylated reagent could not be employed due to epimerization of the stereocenter – probably via an azlactone intermediate.23 However, the exchange of the Fmoc against an N-acetyl group was smoothly accomplished at the very end of the sequence by reacting the coupling product 19 subsequently with piperidine and acetic anhydride. This way, the devised the potential EVH-1 ligand 20 was obtained in satisfying overall yield as shown in Scheme 4. The biological investigation of 20 is not yet finished and the results will be reported separately in the context of a broader study.
:
8) to afford 10.68 g (39.35 mmol, 64%) of 7a (39.35 mmol, 64%) and 1.22 g of 7b (4.48 mmol, 7%), both as yellowish oils. Data for7a: TLC: Rf = 0.21 (CyHex/EtOAc = 10
:
1). 1H NMR (300 MHz, CDCl3): δ (ppm) = 7.36–7.09 (m, 5H, H-Ar), 6.46–6.34 (m, 1H, H-5), 6.26 (dd, J = 5.6, 1.6 Hz, 1H, H-6), 4.29 (s, 1H, H-1), 3.80 (m, 2H, OCH2), 3.03 (q, J = 6.5 Hz, 1H, H-8), 2.89 (s, 1H, H-4), 2.20 (s, 1H, H-3), 2.13 (d, J = 8.3 Hz, 1H, H-7), 1.40 (d, J = 6.6 Hz, 4H, H-7, CH3), 0.94 (t, J = 7.1 Hz, 3H, CH3). 13C NMR (75 MHz, CDCl3): δ (ppm) = 174.3 (C
O), 144.9 (ar-C), 136.4 (C-5), 132.9 (C-6), 128.0 (ar-C), 127.9 (ar-C), 127.0 (ar-C), 65.0 (C-3), 63.9 (benz-C), 62.6 (C-1), 60.2 (OCH2), 49.1 (C-4), 45.3 (C-7), 22.5 (CH3), 14.3; 14.0 (CH3). IR (FT-ATR):ṽ (cm−1): 2976 (m), 1743 (s), 1723 (m), 1454 (m), 1376 (m), 1193 (m), 1163 (s), 1108 (m), 1058 (m), 1034 (m), 701 (s). GC-MS:m/z = 271 [M]+ (1), 204 (9), 176 (21), 160 (16), 131 (15), 105 (100), 91 (11), 77 (16), 51 (5). [α]20 (c = 0.63, CHCl3): −328.8° (365 nm), −178.7° (436 nm), −94.7° (546 nm), −81.8° (579 nm), −78.3° (589 nm). Data for7b: TLC:Rf = 0.39 (CyHex/EtOAc = 10
:
1). 1H NMR (300 MHz, CDCl3): δ (ppm) = 7.49–7.08 (m, 5H, ar-H), 6.40 (ddd, J = 5.6, 3.1, 1.2 Hz, 1H, H-5), 6.03 (dd, J = 5.6, 2.0 Hz, 1H, H-6), 4.24 (q, J = 7.1 Hz, 2H, OCH2), 3.53 (td, J = 3.1, 1.4 Hz, 1H, H-1), 3.13–3.07 (m, 1H, H-4), 3.03 (q, J = 6.5 Hz, 1H, benz-H), 2.46 (s, 1H, H-3), 1.92 (dt, J = 8.2, 1.7 Hz, 1H, H-7), 1.31 (t, J = 7.1 Hz, 3H, CH3), 1.23 (ψd, J = 6.4 Hz, 4H, CH3 + H-7). 13C NMR (75 MHz, CDCl3): δ (ppm) = 174.6 (C
O), 144.9 (ar-C), 135.8 (d, C-5), 133.6 (d, C-6), 128.2 (ar-H); 127.4 (ar-H), 126.9 (ar-H), 64.2 (C-3), 63.4 (d, benz-C), 63.3 (C-1), 60.5 (OCH2), 49.5 (C-4), 45.6 (C-7), 23.7 (CH3), 14.2 (CH3). IR (FT-ATR):ṽ (cm−1): 2977 (m), 1779 (w), 1747 (s), 1723 (m), 1454 (m), 1191 (m), 1172 (s), 1164 (s), 1109 (m), 1053 (m), 1028 (m), 702 (s). GC-MS:m/z = 271 [M]+ (1), 204 (10), 176 (20), 160 (16), 131 (14), 105 (100), 91 (11), 77 (15), 51 (5). [α]20 (c = 0.29, CHCl3) = 406.3° (365 nm), 230.8° (436 nm), 126.0° (546 nm), 109.0° (579 nm), 124.3° (589 nm).
:
1) were added 8.4 g of K2CO3 (60.8 mmol, 3.0 eq.), 20.0 g of K3Fe(CN)6 (60.8 mmol, 3.0 eq.), and 37 mg of K2OsO2 × 2H2O (0.005 mmol). The mixture was stirred at room temp. until TLC control indicated full conversion. After addition of water (150 mL) the mixture was extracted with MTBE (3 × 150 mL) and the combined organic layers were washed with sat. aqueous NaCl solution. After removing the solvent under reduced pressure, the residue (yellowish oil) was purified by flash column chromatography on silica gel (EtOAc/CyHex = 1.5
:
1) and dried in an oil pump vacuum to give 5.88 g of diol 8 (19.3 mmol, 95%) as a colorless oil. TLC: Rf = 0.23 (CyHex/EtOAc = 3
:
2). 1H NMR (300 MHz, CDCl3): δ (ppm) = 7.35–7.12 (m, 5H, ar-H), 4.31 (d, J = 5.7 Hz, 1H, H-6), 3.85 (d, J = 5.7 Hz, 1H, H-5), 3.76–3.62 (m, 2H, OCH2), 3.60–3.54 (m, 2H, H-1, H-8), 2.50 (s, 1H, H-3), 2.25 (s, 1H, H-1), 1.96 (d, J = 10.7 Hz, 1H, H-7), 1.80 (d, J = 10.6 Hz, 1H, H-7), 1.45 (d, J = 6.5 Hz, 3H, benz-CH3), 0.93 (t, J = 7.1 Hz, 3H, CH3). 13C NMR (75 MHz, CDCl3): δ (ppm) = 173.5 (C
O), 143.9 (ar-C), 128.1 (ar-C); 127.9 (ar-C); 127.4 (ar-C), 73.3 (C-5), 67.3 (C-6), 65.6 (C-3), 61.7 (C-1), 60.4 (OCH2), 60.2 (benz-C), 48.9 (C-4), 29.6 (C-7), 22.3 (benz-CH3), 13.9 (CH3). IR (FT-ATR): ṽ (cm−1): 3410 (br), 1739 (s), 1199 (s), 1178 (s), 1144 (m), 1082 (s), 1058 (m), 1031 (s). GC-MS:m/z = 375 [M]+ (17), 290 (13), 244 (74), 232 (54), 214 (4), 184 (22), 172 (37), 140 (36), 105 (100), 79 (15), 68 (34). [α]20 (c = 0.63, CHCl3) = 16.2° (365 nm), 11.8° (436 nm), 7.8° (546 nm), 7.4° (579 nm), 7.3° (589 nm).
:
1) to give 6.4 g of 9 (21.2 mmol, 87%) as a colorless crystalline solid. TLC: Rf = 0.30 (CH2Cl2/MeOH = 20
:
1). 1H NMR (600 MHz, CDCl3, mixture of rotamers): δ (ppm) = 4.34 (d, J = 4.7 Hz, 0.7H, OHrot1), 4.23–4.15 (m, 2H, OCH2), 4.13 (s, 0.7H, H-1rot1), 4.05 (s, 0.3H, H-1rot2), 4.00–3.98 (m, 0.3H, H-5rot2), 3.95 (t, J = 5.1 Hz, 0.7H, H-6rot1), 3.92 (t, J = 4.9 Hz, 0.7H, H-5rot1), 3.87–3.86 (m, 0.3H, H-6rot2), 3.70 (s, 0.3H, H-3rot2), 3.64 (d, J = 4.7 Hz, 0.7H, -OHrot1), 3.60 (s, 0.7H, H-3rot1), 3.27 (d, J = 4.7 Hz, 0.3H, OHrot2), 3.21 (d, J = 5.1 Hz, 0.3H, OHrot2), 2.57–2.55 (m, 1H, H-4), 1.86–1.79 (m, 1H, H-7), 1.82 (br, 1H, H-7), 1.46 (s, 2.70H, tert-Burot2), 1.38 (s, 6.3H, tert-Burot1), 1.28 and 1.26 (2 × t, J = 7.1, 3H, Me). 13C NMR (151 MHz, CDCl3): δ (ppm) = 170.4/170.3 (C
Oester), 153.8/153.5 (C
OBoc), 80.9/80.6 (O
Me3), 73.0/72.6 (C-5), 72.2/71.0 (C-6), 61.3/61.2 (OCH2), 60.2/59.7 (C-3), 60.2/59.2 (C-1), 48.1/47.6 (C-4), 28.7/28.4 (C-7), 28.2/28.0 (C(
H3)3), 14.3/14.1 (CH3). IR (FT-ATR): ṽ (cm−1): 3397 (br), 1749 (m), 1701 (s), 1677 (s), 1404 (s), 1368 (m), 1160 (s). GC-MS: m/z = 301 [M]+ (2), 245 (3), 228 (7), 200 (16), 184 (10), 172 (14), 165 (4), 154 (4), 140 (100), 128 (20), 110 (18), 96 (6), 80 (10), 68 (67), 57 (70), 41 (36). [α]20 (c = 0.57, CHCl3) = −165.5° (365 nm), −102.5° (436 nm), −59.1° (546 nm), −51.5° (579 nm), −55.5° (589 nm). M.p.: 147.5–148.5 °C (from CH2Cl2/MeOH).
:
1) to afford 5.75 g of thiocarbonate 10 (16.8 mmol, 79%) as a yellowish solid. TLC: Rf = 0.29 (CyHex/EtOAc = 3
:
1). 1H NMR (600 MHz, CDCl3, mixture of rotamers): δ (ppm) = 5.02–4.99 (m, 1H, H-5), 4.94 (m, H-6rot1), 4.84 (m, 0.5H, H-6rot2), 4.62 (s, 0.5H, H-1rot1), 4.5 (s, 0.48H, H-1rot2), 4.28–4.15 (m, 2H, OCH2), 3.75 (s, 0.5H, H-3rot2), 3.66 (s, 0.5H, H-3rot1), 3.06–3.02 (m, 1H, H-4), 2.19 (m, 1H, H-7), 1.72 (dd, J = 12.0, 5.7 Hz, 1H, H-7), 1.47 (s, 4.5H, tert-Bu), 1.40 (s, 4.5H, tert-Bu), 1.33–1.25 (m, 3H, CH3). 13C NMR (151 MHz, CDCl3): δ (ppm) = 191.0/190.8 (C
S), 169.0/168.7 (C
Oester), 152.9/152.3 (C
OBoc), 85.2/85.1 (C-6), 83.4/83.3 (C-5), 81.9/81.7 (
Me3), 62.0/61.9 (OCH2), 58.1/57.7 (d, C-3), 57.9/56.7 (C-1), 46.2/45.4 (C-4), 29.7/27.4 (C-7), 28.2/28.1 (C(
H3)3), 14.2/14.1 (CH3). IR (FT-ATR): ṽ (cm−1): 1748 (m), 1703 (s), 1395 (s), 1367 (m), 1346 (m), 1296 (s), 1161 (s), 1119 (m); GC-MS: same as for compound 11 due to rapid thermal fragmentation. [α]20 (c = 0.505, CHCl3) = −192.9° (365 nm), −105.1° (436 nm), −59.4° (546 nm), −51.7° (579 nm), −55.4° (589 nm). M.p.: 71.0–72.0 °C (from CH2Cl2/MeOH).
:
EtOAc, 7
:
1) to give 4.04 g of olefin 11 (15.11 mmol, 91%) as a clear oil. TLC: Rf = 0.53 (CyHex/EtOAc, 3
:
1). 1H NMR (500 MHz, CDCl3; mixture of rotamers): δ (ppm) = 6.47 (br, 0.6H, H-5rot1), 6.37–6.35 (m, 1.5H, H-5rot2/H-6), 4.77 (s, 0.6H, H-1rot1), 4.64 (s, 0.5H, H-1rot2), 4.19 (m, 2H, H-12), 3.46 (s, 0.5H, H-3rot2), 3.37 (s, 0.6H, H-3rot1), 3.25 (s, 1H, H-4), 1.96 (dt, J = 8.6, 1.8 Hz, 1H, H-7), 1.45–1.43 (m, 1H, H-7), 1.41–1.36 (m, 9H, H-10), 1.26 (t, J = 7.2 Hz, 3H, H-13). 13C NMR (125 MHz, CDCl3, mixture of rotamers): δ (ppm) = 171.6 (s, C
Oester), 155.7/154.6 (q, C
OBoc), 137.1 (d, C-5); 136.8/136.2 (d, C-6), 79.8 (s,
Me3), 61.8/60.3 (d, C-1), 61.1/61.0 (t, O-CH2), 59.0 (d, C-3), 48.9/48.2 (d, C-4), 45.4/45.1 (t, C-7), 28.3 (q, C(
H3)3), 14.2/14.1 (q, CH3). IR (FT-ATR): ṽ (cm−1): 1748 (m), 1697 (s), 1388 (s), 1365 (s), 1159 (s), 1122 (s). GC-MS: m/z = 267 [M]+ (7), 211 (6), 194 (4), 167 (10), 151 (21), 138 (82), 102 (18), 94 (100), 67 (15), 57 (59), 41 (16). [α]20 (c = 0.96, CHCl3) = −781.0° (365 nm), −461.7° (436 nm), −257.3° (546 nm), −223.6° (579 nm), −217.2° (589 nm).
:
EtOAc, 5
:
1) to give 12 (613 mg, 2.08 mmol, 70%) as a clear oil. TLC: Rf = 0.34 (CyHex/EtOAc, 5
:
1). 1H NMR (500 MHz, CDCl3; mixture of rotamers): δ (ppm) = 5.85–5.76 (m, 1.6H, H-12, H-14rot1), 5.70 (ddd, J = 17.4, 10.2, 7.4 Hz, 0.4H, H-14rot2), 5.16–4.96 (m, 4H, H-13, H-15), 4.41 (q, J = 7.0 Hz, 0.6H, H-5rot1), 4.31 (q, J = 7.1 Hz, 0.4H, H-5rot2), 4.23–4.07 (m, 2.4H, H-2rot1, H-10), 4.04 (d, J = 5.2 Hz, 0.6H, H-2rot2), 2.78 (p, J = 6.8 Hz, 1H, H-3), 2.36–2.26 (m, 1H, H-4), 1.66–1.59 (m, 1H, H-4), 1.36 (m, 9H, H-8), 1.22 (dt, J = 11.1, 7.1 Hz, 3H, H-11). 13C NMR (125 MHz, CDCl3): δ (ppm) = 172.3; 171.9 (s, C
Oester), 154.3; 153.4 (s, C
OBoc), 140.17 139.4 (d, –CH
at C-5), 138.1 (d, –CH
at C-3), 116.0/115.9 (t,
CH2), 114.5/114.2 (t,
CH2), 80.1; 80.0 (s,
Me3), 65.5/65.1 (d, C-2), 60.8 (t, O-CH2), 60.7/60.6 (d, C-5), 46.7/45.7 (d, C-3), 38.2/37.6 (t, C-4), 28.1/28.1 (q, C(
H3)3), 14.2/14.1 (q, CH3). IR (FT-ATR:ṽ (cm−1): 1744 (s), 1694 (s), 1365 (s), 1254 (m), 1184 (s). GC-MS: m/z = 295 [M]+ (1), 239 (3), 222 (17), 194 (58), 166 (98), 148 (2), 122 (100), 105 (8), 94 (8), 77 (8), 67 (16), 57 (74), 41 (39). [α]20 (c = 0.39, CHCl3) = 48.9° (365 nm), 21.0° (436 nm), 8.1° (546 nm), 6.1° (579 nm), 4.6° (589 nm).
:
1) were added 4 mL of a 2.5 N LiOH solution (10 mmol, 10.0 eq.) and the mixture was stirred for 36 h at room temperature. Then, 10 mL of CH2Cl2 was added and the mixture was concentrated under reduced pressure. The aqueous phase was brought to pH = 1 with aqueous 1 N HCl solution and extracted with CH2Cl2 (4 × 25 mL). The combined organic layers were dried over MgSO4 and all volatiles were removed under reduced pressure to yield 556 mg of carboxylic acid 13 (2.08 mmol, 100%) as a colorless highly viscous oil. TLC: Rf = 0.51 (CyHex/EtOAc/HOAc, 100
:
100
:
5). 1H NMR (600 MHz, CDCl3; mixture of rotamers): δ (ppm) = 9.96 (br, 1H, COOH), 5.86 (ddd, J = 17.4, 10.3, 7.6 Hz, 1H, H-10), 5.86–5.80 (m, 0.6 H, H-10rot2), 5.75 (ddd, J = 17.6, 10.2, 7.4 Hz, 0.4H, H-10rot1), 5.22–4.99 (m, 4H, H-11, H-13), 4.45 (q, J = 7.1 Hz, 0.6H, H-5rot2), 4.34 (q, J = 7.2 Hz, 0.4H, H-5rot1), 4.23 (d, J = 4.7 Hz, 0.4H, H-2rot1), 4.11 (d, J = 5.3 Hz, 0.6H, H-2rot2), 2.99–2.88 (m, 1H, H-3), 2.41 (dt, J = 14.1, 7.7 Hz, 0.4H, H-4rot1), 2.35 (dt, J = 13.8, 7.4 Hz, 0.6H, H-4rot2), 1.79–1.64 (m, 1H, H-4), 1.41; 1.40 (2 × s, 9H, tBu). 13C NMR (151 MHz, CDCl3): δ (ppm) = 178.6; 177.0 (s, C
Oacid), 155.0; 153.4 (s, C
OBoc), 139.9; 139.1 (d,
CH), 138.0; 137.8 (d,
CH), 116.5; 116.3 (t,
CH2), 114.9; 114.6 (t,
CH2), 80.8 (s,
Me3), 65.5; 65.0 (d, C-2), 60.9 (d, C-5), 46.7; 45.4 (d, C-3), 38.3; 37.8 (t, C-4), 28.2 (q, C(
H3)3). IR (FT-ATR):ṽ (cm−1): 3054 (br), 2979 (m), 1745 (m), 1712 (s), 1693 (s), 1645 (m), 1392 (s), 1367 (s), 1307 (m), 1254 (m), 1164 (s). HRMS (ESI): calcd for [M + Na]+ 290.1363; found 290.1363. [α]20 (c = 0.895, CHCl3) = +33.9° (365 nm), +14.8° (436 nm), +5.7° (546 nm), +4.5° (579 nm), +3.9° (589 nm).
:
EtOAc, 2
:
3). 1.68 g of dipeptide 14 (4.16 mmol, 95%) was obtained in the form of a yellowish oil. TLC: Rf = 0.36 (CyHex/EtOAc, 2
:
3). 1H NMR (600 MHz, CDCl3; mixture of rotamers): δ (ppm) = 5.95–5.88 (m, 1H), 5.87–5.75 (m, 1H,), 5.82–5.74 (m, 1H), 5.45 (m, 1H), 5.13 (m, 1H), 5.02 (m, 1H), 5.02 (m, 1H), 4.97 (m, 2H), 4.90–4.84 (t, 0.65H), 4.57–4.55 (m, 0.7H), 4.52–4.47 (m, 1H), 4.41–4.38 (m, 0.65H), 4.34 (m, 0.65H), 4.30 (m), 3.74; 3.72 (2 × s, 3H), 2.85–2.79 (m, 1H), 2.73–2.64 (m, 1H), 2.27–2.11 (m, 2H), 2.01–1.80 (m, 2H), 1.64–1.60 (m, 1H), 1.39; 1.37 (2 × s, 9H). 13C NMR (125 MHz, CDCl3): δ (ppm) = 172.8/172.6; 172.5/172.2, 154.9/153.9, 141.0/140.5, 139.9/139.7, 138.6/138.2, 117.2/116.7, 115.1, 114.1/113.8, 79.8, 63.5/63.2, 61.2/61.0, 60.8, 60.7, 60.0/59.8, 52.2/52.0 46.7/45.7, 37.5/36.2, 32.9/32.6, 28.5/28.3/28.2, 26.9/26.9. For the assignment of NMR signals, see the ESI.†IR (FT-ATR): ṽ (cm−1): 2978 (m), 1750 (s), 1709 (s), 1686 (s), 1657 (s), 1422 (s), 1389 (s), 1366 (s), 1201 (s), 1172 (s). GC-MS: m/z = 404 [M]+ (1), 331 (5), 303 (85), 277 (1), 236 (7), 222 (7), 194 (4), 166 (87), 156 (12), 154 (22), 122 (100), 96 (23), 79 (18), 67 (18), 57 (56), 41 (43). [α]20 (c = 0.51, CHCl3) = 42.2° (365 nm), 21.6° (436 nm), 10.0° (546 nm), 8.3° (579 nm), 6.8° (589 nm). For the assignments of NMR signals, see the ESI.†
:
EtOAc, 1
:
3) to yield 288 mg of 15 (0.77 mmol, 58%) as a grayish solid. TLC: Rf = 0.22 (CyHex/EtOAc, 1
:
1). 1H NMR (500 MHz, CDCl3; mixture of rotamers): δ (ppm) 5.85–5.74 (m, 1.25H), 5.66 (ddd, J = 17.0, 10.1, 8.3 Hz, 0.75H), 5.55 (ddd, J = 11.2, 2.9, 1.6 Hz, 1H), 5.26–4.97 (m, 2H), 4.80 (dd, J = 7.8, 2.8 Hz, 0.75H), 4.73–4.62 (m, 1.25H), 4.50 (dd, J = 25.5, 10.6 Hz, 1H), 4.32 (ddd, J = 10.5, 8.1, 5.6 Hz, 0.25H), 4.25 (ddd, J = 10.3, 8.3, 5.7 Hz, 0.75H), 3.69 (s, 0.75H), 3.68 (s, 2.25H), 2.99–2.85 (m, 1H), 2.39–2.25 (m, 1H), 2.28–2.17 (m, 1H), 2.11–1.97 (m, 2H), 1.96–1.80 (m, 1H), 1.59–1.46 (m, 1H), 1.41 (s, 6H), 1.38 (s, 2H). 13C NMR (100 MHz, CDCl3; mixture of rotamers): δ (ppm) = 172.5; 172.3, 169.7/169.1, 154.2/153.0, 140.0/138.8, 129.6/129.3, 128.9/128.6, 115.1/114.7, 80.0/79.6, 63.2/62.8, 61.8/61.5, 59.5/59.4, 57.1, 52.3/52.1, 39.7/39.5, 39.2/39.1, 33.1/33.0, 28.3/28.1, 27.2/27.0. IR (FT-ATR): ṽ (cm−1): 1701 (s), 1658 (s), 1427 (m), 1401 (m), 1384 (m), 1364 (m), 1319 (m), (s), 1167 (s). GC-MS: m/z = 376 [M]+ (1), 320 (38), 303 (34), 276 (100), 261 (24), 247 (34), 207 (20), 189 (27), 175 (12), 134 (20), 120 (27), 108 (19), 94 (22), 80 (19), 57 (42), 41 (73). HRMS(ESI): calcd for [M + H]+ 377.2071; found 377.2077, calcd for [M + Na]+ 399.1890; found 399.1890. [α]20 (c = 0.65, MeOH) = −448.3° (436 nm), −266.6° (546 nm), −234.0° (579 nm), −224.8° (589 nm). M.p.: 166–167 °C (CH2Cl2). For the assignments of NMR signals, see the ESI.†
:
1). Then, the solvents were removed under reduced pressure and the crude product was purified by flash column chromatography on silica gel (CH2Cl2/MeOH, 30
:
1) to yield 338 mg of 16 (0.71 mmol, 69%) as a yellow foam. TLC: Rf = 0.53 (EtOAc). 1H NMR (500 MHz, CDCl3, data for main rotamer): δ (ppm) = 5.97–5.84 (m, 1.4H), 5.79 (dt, J = 11.2, 2.2 Hz, 1H), 5.75–5.64 (m, 0.6H), 5.63–5.54 (m, 1H), 5.43–5.22 (m, 2H), 5.18–5.04 (m, 2H), 4.93–4.89 (m, 1H), 4.78–4.76 (m, 1H), 4.74–4.70 (m, 2H), 4.42–4.37 (m, 1H), 3.74–3.67 (m, 3H), 2.99–2.91 (m, 1H), 2.55–2.50 (m, 1H), 2.41–2.31 (m, 3H), 2.11–2.00 (m, 2H), 1.91–1.80 (m, 1H), 1.70–1.65 (m, 1H). 13C NMR (125 MHz, CDCl3, data for main rotamer): δ (ppm) = 172.3, 172.1, 168.4, 155.5, 137.9, 133.5, 130.0, 128.1, 118.2, 79.0, 63.9, 62.9, 59.3, 57.2, 52.3, 51.7, 40.9, 38.1, 37.1, 32.8, 28.4, 27.2. IR (FT-ATR): ṽ (cm−1): 3335 (br), 3977 (w), 1705 (m), 1673 (m), 1645 (m), 1501 (w), 1434 (m), 1164 (s). HRMS(ESI): calcd for [M + H]+ 474.2598; found 474.2601, calcd for [M + Na]+ 496.2418; found 496.2418. [α]20 (c = 0.68, CHCl3) = −241.1° (436 nm), −138.0° (546 nm), −120.8° (579 nm), −115.8° (589 nm). For the assignments of NMR signals, see the ESI.†
:
1). The product was purified once again by flash column chromatography (CH2Cl2/MeOH, 25
:
1). To remove traces of Ru, the obtained gray foam was dissolved in 5 mL of a mixture of CH2Cl2/MeOH, 20
:
1 and stirred with Quadrasil AP for 1 h. After filtration and rinsing with 20 mL of CH2Cl2/MeOH (20
:
1) the combined organic solutions were concentrated under reduced pressure and the product was dried in oil pump vacuum to give 277 mg of pure 1 (0.61 mmol, 88%) as a still slightly grayish foam. TLC: Rf = 0.21 (CH2Cl2/MeOH, 20
:
1). 1H NMR (500 MHz, CDCl3): δ (ppm) = 5.86–5.79 (m, 2H), 5.70–5.65 (m, 1H), 5.61–5.56 (m, 1H), 4.78–4.67 (m, 3H), 4.64–4.59 (m, 1H), 4.34–4.29 (m, 1H), 2.99–2.90 (m, 1H), 2.73 (br, 1H), 2.61–2.54 (1H), 2.42 (dt, J = 11.6, 5.7 Hz, 1H), 2.36–2.29 (m, 1H), 2.17–2.00 (m, 2H), 1.95–1.80 (m, 1H), 1.72–1.63 (m, 1H), 1.45 (s, 10H). 13C-NMR (125 MHz, CDCl3): δ (ppm) = 172.5, 170.8, 168.7, 155.4, 130.0, 128.8, 128.0, 79.7, 64.6, 59.4, 57.5, 57.3, 52.3, 40.1, 37.5, 33.0, 29.2, 28.3, 27.0. IR (FT-ATR):ṽ (cm−1): 3410 (br), 1651 (s), 1433 (s), 1168 (s). HRMS(ESI): calcd for [M + Na]+ 446.2286; found 446.2289, calcd for [M + Na]+ 468.2105; found 468.2104. [α]20 (c = 0.5, CHCl3) = −217.1° (436 nm), −128.9° (546 nm), −113.6° (579 nm), −109.5° (589 nm). For the assignments of NMR signals, see the ESI.†
:
1) to give 51 mg of the peptide 17 (94 μmol, 84%) as a yellowish foam. (Note: According to 1H NMR, the product was contaminated with some (≤5%) tetramethylurea which could not be completely separated off even after multiple chromatography.) TLC: Rf = 0.26 (CH2Cl2/MeOH, 20
:
1). 1H NMR (500 MHz, CDCl3, mixture of rotamers): δ (ppm) = 7.67 (d, J = 7.6 Hz, 1H), 6.04–5.55 (m, 4H), 4.82–4.15 (m, 6H), 3.69 (s, 3H), 3.54–3.22 (m, 2H), 2.98–2.90 (m, 1H), 2.71–1.61 (m, 12H), 1.42 (s, 9H). IR (FT-ATR): ṽ (cm−1): 3484 (br), 3413 (br), 3322 (br), 1678 (s), 1666 (s), 1645 (s), 1513 (s), 1433 (m), 1392 (s), 1365 (m), 1198 (m), 1163 (s). HRMS(ESI): calcd for [M + H]+ 543.2813; found: 543.2816, calcd for [M + Na]+ 565.2633; found 565.2626. [α]20 (c = 0.575, CHCl3) = −278.5° (436 nm), −161.2° (546 nm), −141.2° (579 nm), −136.0° (589 nm). For the assignments of NMR signals, see the ESI.†
:
1) to yield 47 mg of 19 (55 μmol, 60%) as a colorless foam. TLC: Rf = 0.26 (CH2Cl2/MeOH, 20
:
1). 1H NMR (500 MHz, CDCl3, mixture of rotamers): δ (ppm) = 7.74–7.72 (m, 2H), 7.53–7.11 (m, 8.3H), 4.89 (td, J = 9.1, 5.3 Hz, 0.7H), 4.82–4.49 (m, 6.3H), 5.90–5.67 (m, 3.7H), 5.61–5.54 (m, 1H), 4.89 (td, J = 9.1, 5.3 Hz, 0.7H), 4.75–4.50 (m, 6.3H), 4.26 (dd, J = 10.5, 7.2 Hz, 1H), 4.15 (dd, J = 10.5, 7.4 Hz, 1H), 4.11–4.03 (m, 1H), 3.68 (s, 3H), 3.71–3.44 (m, 0.3H), 3.53–3.44 (m, 0.7H), 3.31 (dd, J = 13.3, 6.7 Hz, 0.3H), 3.20 (dd, J = 13.8, 5.3 Hz, 0.7H),3.08 (dd, J = 13.1, 7.7 Hz, 0.3H), 2.99 (dd, J = 13.8, 9.3 Hz, 0.7H), 2.96 (br, 1H), 2.67–2.55 (m, 2H), 2.47 (dt, J = 11.6, 5.7 Hz, 1H), 2.41–1.81 (m, 8H),1.69 (q, J = 12.2 Hz, 1H). 13C NMR (125 MHz, CDCl3, mixture of rotamers): δ (ppm) = 172.4, 171.2, 170.5, 170.1, 168.4, 155.6, 143.8/143.7, 141.1, 134.4/133.9, 131.9, 129.9/129.6/129.5/128.6/127.9, 127.6, 126.9, 126.8, 125.1, 125.0, 119.9, 66.9, 64.5, 60.0, 59.3, 57.3, 57.0, 53.6, 52.2, 51.9, 47.4, 47.0, 40.1, 37.4, 37.0, 32.9, 29.1, 27.5, 27.0, 25.0. IR (FT-ATR):ṽ (cm−1): 3292 (br), 1643 (s), 1515 (m), 711 (s). HRMS(ESI): calcd for [M + H]+ 846.3264; found: 846.3278, calcd for [M + Na]+ 868.3083; found 868.3092. [α]20 (c = 0.51, CHCl3) = −356.4° (365 nm), −213.3° (436 nm) −121.6° (546 nm), −106.2° (579 nm), −102.0 (589 nm). For the assignments of NMR signals, see the ESI.†
:
1 → 10
:
1) to give 25 mg of the target ligand 20 (37.5 μmol, 71%) as a colorless foam. TLC: Rf = 0.70 (CH2Cl2/MeOH, 10
:
1). 1H NMR (500 MHz, CDCl3, mixture of rotamers): δ (ppm) = 7.62 (d, J = 9.6 Hz, 0.3H), 7.43 (d, J = 7.2 Hz, 0.7 H), 7.37–7.32 (m, 0.7H), 7.23–7.15 (m, 2.6H), 7.15–7.08 (m, 0.7H), 6.98 (d, J = 8.5 Hz, 0.3H), 6.36 (d, J = 8.5 Hz, 0.7H), 5.90–5.79 (m, 2H), 5.78–5.68 (m, 1H), 5.65–5.55 (m, 1H), 5.09 (td, J = 8.7, 5.5 Hz, 0.7H), 5.01 (td, J = 9.7, 5.0 Hz, 0.3H), 4.80–4.67 (m, 4H), 4.61 (td, J = 7.2, 3.3 Hz, 0.7H), 4.56–4.48 (m, 1H), 4.28 (d, J = 8.1 Hz, 0.3H), 3.72 (q, J = 8.3 Hz, 0.7H), 3.67 (s, 2.1H), 3.59 (s, 0.9H), 3.56 (m, 0.6H), 3.50–3.40 (m, 1H), 3.15 (dd, J = 13.9, 5.5 Hz, 0.7H), 3.05–2.91 (m, 1.7H), 2.80 (dd, J = 13.6, 9.7 Hz, 0.3H), 2.70–2.52 (m, 2H), 2.48 (m, 1H), 2.41–2.27 (m, 2H), 2.25–1.80 (m, 8.1H), 1.77–1.63 (m, 1.9H). 13C NMR (125 MHz, CDCl3, mixture of rotamers): δ (ppm) = 172.4/171.8, 171.3/171.3, 170.5/170.4, 171.1/170.1, 170.1/169.5, 169.1/168.4, 135.4/134.0, 134.4/134.4, 132.0/131.7, 130.0/129.8, 129.5/129.5/129.3/128.6/128.1/127.9/127.8/127.5/126.8/126.2, 64.7/64.5, 60.7/60.1, 59.6/59.3, 57.7/57.4/57.1, 53.7/52.7, 52.4/52.2, 51.0/50.2, 47.5, 40.3/40.1, 37.4/37.3, 36.4/35.9, 32.9/32.8, 29.7/29.1, 27.5, 27.0, 25.0, 23.0, 22.2. IR (FT-ATR): ṽ (cm−1): 3298 (br), 1434 (s). HRMS(ESI): calcd for [M + H]+ 666.2689; found 666.2692, calcd for [M + Na]+ 688.2508; found 688.2508. [α]20 (c = 0.7, CHCl3) = −493.1° (436 nm), −280.2° (546 nm), −244.1° (579 nm), −234.6° (589 nm). For the assignments of NMR signals, see the ESI.†
Footnote |
| † Electronic supplementary information (ESI) available: NMR and X-ray crystallographic details. CCDC 2211404. For ESI and crystallographic data in CIF or other electronic format see DOI: https://doi.org/10.1039/d2ob01857h |
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