Open Access Article
Cong Duc
Tran
a,
Gerald
Dräger
a,
Henry Frederik
Struwe
a,
Lukas
Siedenberg
a,
Somi
Vasisth
b,
Jörg
Grunenberg
b and
Andreas
Kirschning
*a
aInstitute of Organic Chemistry, Leibniz University Hannover, Schneiderberg 1B, 30167 Hannover, Germany. E-mail: andreas.kirschning@oci.uni-hannover.de
bInstitute of Organic Chemistry, TU Braunschweig, Hagenring 30, 38106 Braunschweig, Germany
First published on 15th September 2022
New homo-sesquiterpenes are accessible after conversion of presilphiperfolan-8β-ol synthase (BcBOT2) with cyclopropylmethyl analogs of farnesyl diphosphate, and this biotransformation is dependent on subtle structural refinements. Two of the three cyclisation products are homo variants of germacrene D and germacrene D-4-ol while the third product reported contains a new bicyclic backbone for which no analogue in nature has been described so far. The findings on diphosphate activation are discussed and rationalised by relaxed force constants and dissociation energies computed at the DFT level of theory.
In the case of BcBOT2, the product of such a cation cascade is the tricyclic sesquiterpene presilphiperfolan-8β-ol (2).3 Interestingly, our recent studies4 show that BcBOT2 is well suited to investigate the scope of substrate promiscuity of sesquiterpene cyclases (STCs).5 In particular, we demonstrated that linear ether and thioether derivatives of FPP 1, as well as isomers in which the methyl groups are shifted by one position on the alkenes toward the diphosphate group, are transformed by BcBOT2, leading to new unnatural sesquiterpene ring systems and backbones.4 The formation of 2 is initiated by a ring closure between carbon atoms 1 and 11.
Chemically, the cyclopropane ring can be considered a homoalkene group, showing similar but reduced π-reactivity compared to alkenes.6 The formation of a carbocation in the neighboring of the cyclopropyl ring leads to a rapid equilibrium between the cyclopropylmethyl and the cyclobutyl cation. (3 → 4).7 Given these features and chemical properties of the cyclopropyl ring, we wondered at the outset of the present study whether TCs and specifically BcBOT2 is also capable of activating cyclopropylmethyl diphosphate and initiating a cascade reaction arising from this situation. And if this particularly promiscuous sesquiterpene cyclase is capable of such an activation, the question arises whether the equilibrium between cations 3 and 4 initially plays a role before the first cyclisation step occurs. This, in turn, is clearly a theoretical issue and can be solved by determining relaxed force constants and dissociation energies calculated, for example, at the DFT level of theory.8 Noteworthy, while the expected transformation products from cyclopropanes 5 and 7 should have the same molecular formula as the typical products from natural FPP 1, diphosphates 6 and 8 should yield “homo-sesquiterpenes” (Scheme 1).
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| Scheme 1 Left: transformation of FPP 1 by BcBOT2 and formation of presilphiperfolan-8β-ol (2). Top right: estimated strain energies (kcal mol−1) of cyclopropane and cyclobutane based on single conformation increments (ref. 9) and rearrangement reaction of the cyclopropylmethyl cation 3. Bottom right: structures of FPP-analogues 5–8 bearing a cyclopropylmethyl diphosphate moiety. | ||
Likewise, cyclopropylmethyl diphosphates 6 and 8 were prepared from farnesol (15) after asymmetric cyclopropanation, again using the two chiral ligands 12a and 12b and subsequent phosphorylation (Scheme 2, bottom). The enantiomeric excess of the newly formed cyclopropanes was determined by chiral GC, and the hydrodex-β-6-tbdm column (l = 25 m, inner θ = 0.25 mm, film thickness = 0.25 μm) proved to be the most suitable for separating the two enantiomers in each case (5: >90% ee; 6: 94% ee; 7: >90% ee; 8: >90% ee).14
| Diphosphate | Products m/z | Retention index (RI) |
|---|---|---|
| a The structures of these products are reported in Scheme 3. b both products are supposedly enantiomers. c the product is formed in about 0.3% at 35–40 °C. | ||
| 5 | 204 | 1771 |
| 6 | Major:a 218, 2× 236 | 1599, 1773, 1782 |
| Minor: 3× 218 | 1517,b 1548, 1560 | |
| 7 | 204, 222 | 1771, 1750 |
| 8 | 218 | 1516b,c |
Biotransformations with cyclopropane derivatives 5 and 7, which lack the methyl group at C3, yielded several products, however, these exhibited very low signal intensities (<1% compared to biotransformation using FPP). The same was true for (R,R)-derivative 8. Cyclopropylmethyl diphosphate 6, however, was readily accepted by BcBOT2. GC/MS analysis identified three major products (one product: m/z = 218 and two products: m/z = 236) that had formed in sufficient quantities to repeat the experiment on a larger scale (batch size: 75 μmol 6).
The constitution of the three new homo-sesquiterpenes 17–19 (Scheme 3) was elucidated by NMR spectroscopy, using in particular the COSY and HMBC correlations. Selected NOE data provided information on the preferred conformation of the macrocycles and hence stereochemical information on the relative stereochemistry of the substituents on the macrocycles in 18 and 19 (Fig. 1). The configuration of the 1,2-disubstituted olefinic double bonds in macrocycles 17 and 18 is proposed based on the recorded coupling constants (J = 15.2 Hz in 17 and 15.4 Hz in 18) (Table 2). The absolute stereochemistry, assuming a common mechanism for the formation of the three biotransformation products, is derived from the intact cyclopropane moiety in bicyclic biotransformation product 19.
| 17 | J H5,H6 | J H6,H7 | J H7,H8a | J H7,H8b | J H8a,H8b |
| 9.4 | 15.2 | 9.4 | 5.5 | 12.6 | |
| 18 | J H2a,H2b | J H2a,H3 | J H2b,H3 | J H3,H4 | J H4,H5 |
| 13.0 | 10.0 | 5.4 | 15.4 | 10.0 | |
| 19 | J H1,H2 | J H2,H3 | J H1,CHa | J H1,CHb | J CHa,CHb |
| 9.8 | 1.6 | 5.6 | 8.4 | 4.2 |
The crude product obtained was subjected to column chromatographic purification (silica gel; n-pentane/Et2O = 10
:
1 → 4
:
1 → 2
:
1), which first allowed separation of the triene 17 (24%) from the two alcohols 18 (11%) and 19 (17%) these were present in a ratio of 2
:
3, as indicated by the integrals in the 1H NMR spectrum. Triene 17 is the homo-analogue of germacrene D (20) and alcohol 18 corresponds to germacrene D-4-ol (21),15 while the backbone of alcohol 19 is closely related to the sesquiterpene kunzeaol (22).16
Our previously collected findings on the pronounced promiscuity of presilphiperfolan-8β-ol synthase (BcBOT2) are further confirmed in this study. Among a number of other STCs assayed, only bacterial caryolan-1-ol synthase (GcoA) from Streptomyces griseus, cubebol synthase (Cop4) from Coprinus cinereus, and epi-isozizaene synthase (Cyc1) from Streptomyces coelicolor convert diphosphate 6 to both alcohols 18 and 19, but only to a small extent (1–10% compared to biotransformations with FPP 1) while in no case the formation of triene 17 was detected. Cop4 also accepted the other enantiomeric cyclopropane 8, but again the overall yields were too small for collecting sufficient amounts of the newly formed products (see ESI†). In selected cases optimisation of the conditions were carried out that included temperature dependence of the biotransformation, elongation of reaction times, the addition of PPase to remove the byproduct diphosphate which might act as an inhibitory and the addition of a second portion of enzyme after 30 minutes. However, only the incubation temperature had an effect on yields. When the olefinic double bond is absent, as in the case of the dihydro-FPP derivative rac-23, GC-MS analysis of the crude product revealed no formation of new products upon biotransformation with BcBOT2.
After optimisation of each of the models A–E (Table 3), starting from the ligand-bound conformation fitted to the pdb structure 4OKZ, a def2tzvp basis set, and a continuum solvent, the relaxed force constants were calculated using our freely available COMPLIANCE code (see ESI†). The values obtained show significant differences for the model systems B–E compared to natural (oligo)prenyl diphosphates as precursors in class I terpene cyclases. For the natural farnesol derivative A a weak relaxed force constant of 3.22 N m−1 was calculated. In contrast, the cyclopropane ring has a significant stabilizing kinetic effect on the corresponding C–O bond for case C (E = 3.73 N m−1) and a moderate effect for case E (E = 3.44 N m−1). Removal of the olefinic double bond as in B or shifting the olefin by one position as in D leads to an increased, kinetic stability of the C–O bond by about 20% (3.84 and 3.74 N m−1, respectively).
However, it is quite possible that the kinetic hindrance of the cyclopropyl-bearing ring in C and E is largely cancelled or overridden by thermodynamic factors. Therefore, the dissociation energies of the relevant C–O (phosphate) bonds were calculated. These are in the range between 24 and 26 kcal mol−1 for models A–D (Table 3), reflecting the comparable relative stability of the resulting carbocations.21 FPP 1 provides a stabilised allyl cation (A). Aliphatic B forms a tertiary carbocation after a rapid and barrier-free hydrogen shift from C3 (see file B.gif in the ESI†). After diphosphate dissociation, the cyclopropylmethyl substructure (C) is the source of a tertiary carbocation that is stabilised by a pronounced hyperconjugation (see ESI†; C.gif). In case D, stabilisation occurs by cyclopropylcarbinyl cation formation (see ESI†; D.gif). Noteworthy, such cations have been discussed in the context of the mechanism of pentalenene formation.22 Finally, in the case of di-instead of a trisubstituted cyclopropyl ring (model system E), a secondary homoallyl carbocation is formed and the cation cascade is about 5 kcal mol−1 more endothermic (30.27 kcal mol−1; Table 3) compared to the model systems A–D.
Finally, we investigated the cyclopropylmethyl/cyclobutyl rearrangement, which is of importance in initiating the cascade reaction. While the reduced strain energy in four-membered ring systems should facilitate cyclopropylmethyl/cyclobutyl ring expansion, it is nevertheless unclear how reliable previous force field calculations are with respect to this equilibrium, particularly because the potential energy surface of C4H7(+) is dominated by strong electron correlation. For example, MP2/cc-pVTZ calculations by Olah and coworkers23 give the bisected cyclopropylcarbinyl cation an energy lower by only 0.4 kcal mol−1 compared to the nonclassical bicyclobutonium ion, while solvent effects seem to complicate the whole situation.24 And indeed, an intrinsic reaction path (IRC) calculation, starting from the transition state of initial macrocyclisation (6 → 24) with the inclusion of continuum solvent effects, suggests a complex situation with CH2 migration without the formation of a cyclobutyl intermediate. This inherent dynamic behavior can also occur in the presence of an enzyme, an important aspect in the context of this work.25
Our calculations demonstrate that cyclopropylmethyl diphosphate precursors such as 6 are capable of entering a cationic reaction cascade via the stabilised cations 28 and without changing the regiochemistry of the first step (Scheme 5), despite their slight kinetic hindrance. When the bicyclobutonium ion 28b is the first relevant cation, the regiochemistry is determined solely by the enzyme-induced folding of the linear substrate. The formation of the newly formed homosesquiterpenes support the theoretical studies by Tantillo et al., on a cyclopropane-to-cyclopropane rearrangement of sterols who concluded that a carbocationic pathway can be preferred over a radical pathway and they propose a bicyclobutonium intermediate in their studies.26
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| Scheme 5 First step of cyclisation via the cyclopropylmethyl cation 28a or the bicyclobutonium ion 28b. | ||
The results thus also address questions about cyclopropylmethyl cations and activation barriers for cyclopropylmethyl rearrangement. And they extend insights into the remarkable substrate flexibility of STCs, because FPP derivatives in which the C3 methyl group is shifted to C2 are also accepted and activated.
:
Et2O) to yield three biotransformation products. Column chromatography (silica, n-pentane
:
Et2O = 10
:
1 → 4
:
1 → 2
:
1) allowed to separate the triene 17 from the more polar alcohols 18 and 19, which were obtained as a 2
:
3 mixture.
:
EtOAc = 4
:
1); 1H-NMR (400 MHz, CDCl3): δ = 5.12–5.15 (m, 1 H, H-6), 5.11 (ddd, J = 15.1 Hz, 9.4 Hz, 5.5 Hz, 1 H, H-2), 5.02 (dd, J = 15.3 Hz, 9.5 Hz, 1 H, H-1), 4.81 (d, J = 8.2 Hz, 2 H, H-14), 2.73 (dd, J = 12.5 Hz, 5.4 Hz, 1 H, H-13), 2.48 (dd, J = 12.7 Hz, 9.4 Hz, 1 H, H-13), 2.28–2.32 (m, 1 H, H-5), 2.22–2.25 (m, 1 H, H-8), 2.12–2.15 (m, 1 H, H-4), 2.06–2.10 (m, 1 H, H-8), 1.94–1.96 (m, 1 H, H-4), 1.90–1.92 (m, 1 H, H-5), 1.84–1.87 (m, 1 H, H-10), 1.40–1.43 (m, 2 H, H-9), 1.49 (m, 4 H, H-11, H-15), 0.83 (d, J = 6.8 Hz, 3 H, H-12/16), 0.80 (d, J = 6.9 Hz, 3 H, H-12/16) ppm; 13C-NMR (100 MHz, CDCl3): δ = 150.1 (C-3) 135.2 (C-7), 133.5 (C-1), 128.9 (C-2), 127.3 (C-6), 111.2 (C-14), 53.1 (C-10), 43.4 (C-13), 41.6 (C-8), 33.6 (C-11), 34.2 (C-4), 29.6 (C-5), 20.8 (C-12), 28.2 (C-9), 15.9 (C-15), 19.0 (C-16) ppm.
:
EtOAc = 4
:
1); 1H-NMR (400 MHz, CDCl3): δ = 5.28 (ddd, J = 15.4 Hz, 10.0 Hz, 5.2 Hz, 1 H, H-2) 5.13 (dd, J = 15.4 Hz, 9.8 Hz, 1 H, H-1), 5.06–5.09 (m, 1 H, H-6), 2.26–2.33 (m, 1 H, H-5), 2.23–2.25 (m, 1 H, H-8), 2.18–2.19 (m, 1 H, H-13), 2.15–2.17 (m, 1 H, H-8), 2.01 (dd, J = 13.0 Hz, 10.1 Hz, 1 H, H-13), 1.89–1.95 (m, 1 H, H-10), 1.82 (m, 1 H, H-5), 1.80 (m, 1 H, H-4), 1.67–1.69 (m, 1 H, H-4), 1.57 (s, 3 H, H-15), 1.55 (br, 1 H, OH), 1.49–1.52 (m, 1 H, H-11), 1.36–1.40 (m, 2 H, H-9), 1.24 (m, 3 H, H-14), 0.83 (d, J = 6.8 Hz, 3 H, H-12/16), 0.80 (d, J = 6.9 Hz, 3 H, H-12/16) ppm; 13C-NMR (100 MHz, CDCl3): δ = 135.9 (C-1) 133.2 (C-7), 128.8 (C-2), 130.1 (C-6), 72.8 (C-3), 53.5 (C-10), 48.0 (C-13), 33.8 (C-11), 42.2 (C-8), 30.1 (C-14), 40.0 (C-4), 27.2 (C-9), 23.9 (C-5), 16.0 (C-15), 18.8 (C-12/16), 20.7 (C-12/16) ppm.
:
EtOAc = 4
:
1); 1H-NMR (400 MHz, CDCl3): δ = 5.32 (t, J = 7.6 Hz, 1 H, H-6) 3.36 (dd, J = 9.9 Hz, 1.7 Hz, 1 H, H-1), 2.20–2.25 (m, 2 H, H-5, H-8), 2.13–2.17 (m, 1 H, H-5), 1.84–1.88 (m, 1 H, H-4), 1.80 (m, 1 H, H-8), 1.73–1.76 (m, 1 H, H-9), 1.67–1.69 (m, 1 H, H-11), 1.64 (s, 3 H, H-15), 1.55 (br, 1 H, OH), 1.32–1.35 (m, 1 H, H-9), 1.05–1.08 (m, 1 H, H-10), 1.00 (d, J = 6.7 Hz, 3 H, H-12/16), 0.98 (s, 3 H, H-14), 0.93 (d, J = 6.6 Hz, 3 H, H-12/16), 0.85–0.87 (m, 1 H, H-4), 0.62 (ddd, J = 9.7 Hz, 8.3 Hz, 5.6 Hz, 1 H, H-2), 0.40 (dd, J = 8.3 Hz, 4.3 Hz, 1 H, H-13), 0.12 (dd, J = 5.5 Hz, 4.3 Hz, 1 H, H-13) ppm; 13C-NMR (100 MHz, CDCl3): δ = 133.2 (C-7) 124.0 (C-6), 74.7 (C-1), 48.4 (C-10), 39.2 (C-4), 38.8 (C-8), 32.2 (C-11), 30.0 (C-2), 25.6 (C-9), 24.2 (C-5), 21.7 (C-12/16), 21.3 (C-12/16), 18.8 (C-15), 18.5 (C-3), 17.3 (C-14), 17.2 (C-13) ppm.
Further details are found in the ESI.†
Footnote |
| † Electronic supplementary information (ESI) available. See DOI: https://doi.org/10.1039/d2ob01279k |
| This journal is © The Royal Society of Chemistry 2022 |