Maria
Miguel-Gordo
a,
Maggie M.
Reddy
a,
Pilar
Sánchez
b,
Jordan J.
Buckley
a,
Thomas A.
Mackenzie
b,
Laurence K.
Jennings
a,
Fernando
Reyes
b,
Kevin
Calabro
a and
Olivier P.
Thomas
*a
aMarine Biodiscovery Laboratory, School of Chemistry and Ryan Institute, National University of Ireland Galway, University Road, Galway H91 TK33, Ireland. E-mail: olivier.thomas@nuigalway.ie
bFundación MEDINA, Centro de Excelencia en Investigación de Medicamentos Innovadores en Andalucía, Parque Tecnológico de Ciencias de la Salud, Avenida del Conocimiento 34, Armilla, Granada E-18016, Spain
First published on 4th January 2022
An abundant sponge of the order Bubarida was selected for further chemical investigation following biological and chemical screening of sponges collected from Futuna Islands in the Indo-Pacific. Ten new nitrogenous bisabolene derivatives were isolated and identified: the monomeric theonellin formamide analogues named bubaridins A–F (1–6) with unusual oxidised linear chains, and the first isocyanide/formamide dimeric and cyclised bisabolenes 7–9. The structure elucidation of these nitrogenous bisabolenes involved HRESIMS, NMR, and ECD analyses, and the chiral compounds were found to be racemates. A biosynthetic hypothesis for the production of these metabolites is proposed and some chemotaxonomic considerations are discussed. Furthermore, the antimicrobial and antitumoral activity were evalutated and the trans-dimer theonellin isocyanide (7) was shown to exhibit potent and selective antifungal activity.
A recent study highlighted the need for accurate taxonomic identification of sponges for natural product chemistry.3 However, identifying sponges, particularly from understudied regions of the world such as Futuna Island, remains a challenge because some taxa may have developed convergent morphological traits over their long evolutionary history and geographic isolation. This means that evolutionary distinct species may superficially resemble one another and will require DNA verification.4 An example is the order Bubarida which was described in 1894 by Topsent and later resurrected by Morrow and Cardenas in 2015.5 DNA from the generitypes of Acanthella, Dictyonella, Bubaris, Phakellia, Desmanthus and Cymbastella indicate that the order forms a well-supported clade. However, familial relationships are less clear as members of the Dictyonellidae are polyphyletic with respect to members of the Bubaridae. Nevertheless, the former family includes species of Acanthella, Dictyonella and Cymbastella that are known to produce nitrogenous terpenes with known pharmaceutical application.
The preliminary biological screening of fractions from this sponge showed potent antifungal activity. The infection by Candida spp. is the most common fungal infection with high mortality rates especially among immunocompromised patients. Furthermore, with the increasing occurrence of resistant Candida strains, the treatment of these infections is becoming challenging.6 The in-depth chemical study of this sponge led to the isolation and structure elucidation of 10 new nitrogenous bisabolenes (Fig. 1): seven monomeric formamide bisabolenes 1–6, including two epimers of 4, two isocyanide bisabolene dimers 7 and 8, and one formamide dimeric bisabolene 9, together with the known N,N‘-bis[(6R,7S)-7,8-dihydro-α-bisabolen-7-yl]urea,7 aureol,8 theonellin formamide,9 and 7-isothiocyanato-7,8-dihydro-α-bisabolene.7 The metabolites were screened against a range of microbial pathogens with a focus on pathogenic fungi, and the dimers were further tested against five tumoral cell lines.
No. | 1 | 2 | 3 | 4 and 11-epi-4d | 5 | 6 | |
---|---|---|---|---|---|---|---|
Endo/exo (3![]() ![]() |
Endo/exo (3![]() ![]() |
Endo/exo (3![]() ![]() |
Endo/exo (3![]() ![]() |
11-Epimer |
Endo/exo (3![]() ![]() |
Endo/exo (3![]() ![]() |
|
a Overlap (data from HSQC), b and c signals can be exchanged, d unable to distinguish between 4 and 11-epi-4. | |||||||
1ab | 1.79/1.75a, br d (13.0) | 1.75/1.80, br d (12.0) | 1.62/1.66a, dd (13.5, 3.0) | 1.70, m | — | 1.70/1.77, br d (14.0) | 1.67/1.71, br d (12.5) |
1bc | 1.29/1.31, br m | 1.23/1.31, m | 1.48/1.51, qd (13.5, 2.5) | 1.43, br q (14.0) | 1.46, m | 1.54/1.52, qd (12.5, 3.5) | |
2/4a | 2.02/1.84a, br dd (13.0, 2.5) | 2.00/1.81, br d (13.0) | 2.00/1.83, br d (12.5) | 2.02/1.83, dd (13.5, 2.5) | — | 2.02/1.84, br d (13.0) | 2.02/1.86, br d (13.0) |
2/4b | 1.67/1.58, br td (13.0, 4.0) | 1.63/1.55, td (13.0, 3.5) | 1.74/1.65a, td (12.5, 3.5) | 1.67/1.57, td (13.5, 3.5) | 1.71/1.60, td (12.5, 4.0) | 1.78/1.68, td (13.0, 3.5) | |
5ab | 1.69/1.73a, m | 1.70, br d (12.0) | 1.62/1.66a, dd (13.5, 3.0) | 1.62, br d (13.5) | — | 1.66, br d (13.5) | 1.67/1.71, br d (12.5) |
5bc | 1.34, br m | 1.27, m | 1.48/1.51, qd (13.5, 2.5) | 1.35, m | 1.35, m | 1.54/1.52, qd (12.5, 3.5) | |
6 | 1.45, tt (12.5, 3.0) | 1.38, tt (12.5, 3.5) | 1.97, tt (12.0, 3.0) | 1.23a | — | 1.31, br t (13.0) | 2.12, tt (12.5, 3.0) |
8 | 6.41, d (15.0) | 5.73, d (15.5) | 5.89/5.90, br d (10.5) | 3.32a | — | 3.47/3.48, br d (6.0) | 6.12, d (11.5) |
9 | 6.81/6.82, dd (15.0, 11.5) | 6.49, dd (15.5, 10.5) | 6.56, dd (15.5, 10.5) | 5.68, dd (15.5, 7.5) | 5.67, dd (15.5, 7.5) | 6.79/6.84, dd (16.0, 6.0) | 7.60, dd (15.5, 11.5) |
10 | 7.05, br d (11.5) | 6.07, br d (10.5) | 5.67/5.68, br d (15.5) | 6.02, br d (15.5) | — | 6.34/6.37, d (16.0) | 6.12, d (15.5) |
12 | 9.42, s | 3.99, s | 3.40, d (11.0) | 3.41, d (11.0) | 3.40, d (11.0) | 2.28, s | 2.29, s |
3.38, d (11.0) | 3.38, d (11.0) | 3.39, d (11.0) | |||||
13 | 1.36/1.32, s | 1.35/1.30, s | 1.41/1.36, s | 1.397/1.353, s | — | 1.40/1.36, s | 1.42/1.38, s |
14 | 1.31, s | 1.26, s | 1.77/1.78, s | 1.226/1.235, s | — | 1.23/1.24, s | 1.95/1.96, s |
15 | 1.84, br s | 1.79, s | 1.26, s | 1.251, s | 1.245, s | ||
16 | 7.87/8.24, s | 7.86/8.24, s | 7.88/8.26, s | 7.87/8.25, s | — | 7.88/8.26, s | 7.89/8.27, s |
No. | 1 | 2 | 3 | 4 and 11-epi-4d | 5 | 6 | |
---|---|---|---|---|---|---|---|
Endo/exo (3![]() ![]() |
Endo/exo (3![]() ![]() |
Endo/exo (3![]() ![]() |
Endo/exo (3![]() ![]() |
11-Epimer |
Endo/exo (3![]() ![]() |
Endo/exo (3![]() ![]() |
|
a Data from HMBC, overlapped with solvent signal, b and c signals can be exchanged, d unable to distinguish between 4 and 11-epi-4. | |||||||
1b | 23.8/24.0, CH2 | 24.0/24.1, CH2 | 28.4/28.6, CH2 | 24.7/24.9, CH2 | — | 24.9/25.0, CH2 | 28.2/28.3, CH2 |
2c | 37.7/39.8, CH2 | 37.82/39.9, CH2 | 37.6/39.8, CH2 | 37.21/39.4, CH2 | — | 37.1/39.3, CH2 | 37.4/39.6, CH2 |
3 | 54.6/53.8, C | 54.6/53.8, C | 54.5/53.7, C | 54.5/53.8, C | — | 54.5/53.7, C | 54.4/53.6, C |
4c | 37.6/39.7, CH2 | 37.75/39.8, CH2 | 37.6/39.8, CH2 | 37.18/39.3, CH2 | — | 37.1/39.3, CH2 | 37.4/39.6, CH2 |
5b | 24.4/24.6, CH2 | 24.4/24.5, CH2 | 28.4/28.6, CH2 | 25.5/25.6, CH2 | — | 25.5/25.6, CH2 | 28.2/28.3, CH2 |
6 | 48.8a, CH | 49.6/49.8, CH | 47.9/47.8, CH | 46.9/46.7, CH | — | 46.9/46.6, CH | 48.4, CH |
7 | 75.7/75.6, C | 75.5/75.4, C | 143.1/142.8, C | 66.6/66.5, C | — | 68.0/67.8, C | 157.0/156.7, C |
8 | 152.2/152.1, CH | 140.2/140.1, CH | 124.4/124.6, CH | 64.1, CH | — | 62.2/62.1, CH | 123.5/123.6, CH |
9 | 124.2/124.3, CH | 124.9/125.0, CH | 126.33/126.26, CH | 125.2/125.1, CH | — | 143.9/143.8, CH | 142.2/142.1, CH |
10 | 150.6/150.5, CH | 125.6/125.5, CH | 137.0/137.1, CH | 142.24, CH | 142.20, CH | 134.3/134.4, CH | 129.6/129.7 CH |
11 | 138.2/138.3, C | 137.7/137.8, C | 74.2, C | 74.08, C | 74.07, C | 200.1a, C | 202.1, C |
12 | 197.0, CH | 68.50/68.45, CH2 | 70.9, CH2 | 70.6, CH2 | — | 27.3a, CH3 | 27.2, CH3 |
13 | 22.1/24.2, CH3 | 22.1/24.2, CH3 | 22.5/24.5, CH3 | 22.2/24.2, CH3 | — | 22.23/22.20, CH3 | 22.4/24.4, CH3 |
14 | 25.7/25.8, CH3 | 25.7/25.8, CH3 | 15.2/15.1, CH3 | 14.05, CH3 | 14.03, CH3 | 13.97/13.99, CH3 | 16.0, CH3 |
15 | 9.3, CH3 | 14.2, CH3 | 24.7, CH3 | 24.6, CH2 | 24.5, CH2 | ||
16 | 162.9/165.1, CH | 162.9/165.1, CH | 162.9/165.1, CH | 162.9/165.1, CH | — | 162.9/165.1, CH | 163.0/165.2, C |
Finally, the conjugated system was assigned as s-trans for both single bonds due to additional H-12/H-10/H-8 nOe correlations. For the absolute configuration of the unique chiral center at C-7, the ECD spectrum of 1 did not show any clear Cotton effect, despite the presence of a chromophore close to the chiral center and a UV band at 274 nm. This led to the conclusion that bubaridin A (1) is a racemic mixture of enantiomers at C-7. A very weak optical rotary power also corroborated this assumption.
Compound 2 was obtained as colourless oil and exhibited a protonated ion at m/z 282.2077 [M + H]+ by (+)-HRESIMS, consistent with the chemical formula C16H27NO3. The 1H NMR, and 13C NMR spectra (Tables 1 and 2) were similar to those of compound 1, suggesting the same formamide bisabolene skeleton. Three methyl singlets (δH 1.35, 1.79 and 1.26), a conjugated diene system (δH 6.07, 6.49, and 5.73), the signals of the cyclohexane core and the same formamide peaks in a proportion 3:
1 (endo/exo) were present for 2. The presence of diastereotopic methylenes on the cyclohexane was again evidenced in the 13C NMR spectrum of 2 and suggested a chiral center at C-7 in 2. However, when compared to 1, the shielding of the olefinic signals and the absence of the aldehyde signal in the 1H NMR spectrum of 2 suggested that the aldehyde was no longer present in 2. Instead, new signals at δH 3.99 (s, H-12) and δC 68.5 (C-12) were consistent with a primary alcohol at C-12 and this was further supported by the key H3-15/C-12 HMBC correlation. The H-12/H-10/H-8 nOe correlations confirmed the same relative configurations for the conjugated dienic system of the side-chain and the absence of Cotton effect in the ECD spectrum also indicated that bubaridin B (2) was also a racemic mixture.
Compound 3 was isolated as a colourless oil with the same molecular formula C16H27NO3 as 2 as evidenced by a protonated ion at m/z 282.2088 [M + H]+ by (+)-HRESIMS. The 1H NMR, and 13C NMR spectra (Tables 1 and 2) showed the characteristic peaks of the formamide bisabolene skeleton with three methyl singlets at δH 1.41, 1.77 and 1.26 and the same formamide signals in a ratio 3:
1 (endo/exo). The absence of a chiral center at C-7 was proposed as the signals of the cyclohexane ring at C-1 and C-5 were equivalent for 3. A modification on the side-chain was further supported by the deshielding of the signal of H-6 at δH 1.97. Examination of HMBC correlations from the methyls C-14 and C-15 revealed differences in the linear chain when compared to compounds 1 and 2. The key H3-15/C-10, C-11 and C-12 HMBC correlations located the methyl C-15 on the non-protonated oxygenated carbon C-11 at δC 74.2 which was still linked to a primary alcohol at C-12 as in compound 2. The presence of the chiral tertiary alcohol at C-11 was responsible for the AB system of the signals corresponding to the methylene H2-12. In addition, key H3-14/C-6, C-7 and C-8 HMBC correlation linked the methyl C-14 to the unsaturated carbon C-7 at δC 143.1. Compounds 2 and 3 might then be formed by isomerisation of the conjugated system/tertiary alcohol, probably through an intermediate carbocation. While the value of the coupling constant 3JH9–H10 15.5 Hz revealed an E configuration for C-9/C-10, the H-6/H-8 and H3-14/H-9 nOe correlations were consistent with an E configuration for the second C-7/C-8 olefin, and the H-8/H-10 nOe confirmed the s-trans configuration of the conjugated system. Again, the ECD spectrum of compound 3 showed no Cotton effects suggesting that bubaridin C (3) is also a racemate. Interestingly, during the NMR analyses performed in CDCl3, 3 slowly evolved into the aldehyde 1 through isomerisation and subsequent oxidation. This transformation would have occurred in the slightly acidic conditions of the solvent CDCl3.
Compound 4 was obtained as a colourless oil, and the chemical formula C16H27NO4 was deduced from the molecular ion peak at m/z 298.2023 [M + H]+ by (+)-HRESIMS. The 1H NMR, and 13C NMR spectra of compound 4 revealed some similarities with those of compound 3 (Tables 1 and 2) with the vicinal diol evidenced by the AB system at δH 3.41 (d, J = 11.0 Hz, H-12a) and 3.38 (d, J = 11.0 Hz, H-12b). However, the signals were apparently “duplicated” in a 1:
1 ratio with another AB system at δH 3.40 (d, J = 11.0 Hz, H-12′a) and 3.39 (d, J = 11.0 Hz, H-12′b). This observation suggested that 4 was an inseparable mixture of a pair of diasteroisomers formed by the presence of another chiral center on the side chain. In the case of 4, only two olefinic protons at δH 5.68 (dd, J = 15.5, 7.5 Hz, H-9) and 6.02 (br d, J = 15.5 Hz, H-10) were observed in the 1H NMR spectrum suggesting that the second olefin of 3 was functionalised in 4. A new signal at δH 3.32 (H-8) and δC 64.1 (C-8) was in accordance with an epoxide at position C-7/C-8.13 The key H3-15/C-10, C-11 and C-12 HMBC correlations linked the double bond to the vicinal diol at C-11/C-12 and the H-9/H-8 COSY correlation placed the epoxide on the other side of the double bond. The configuration of the double bond was assigned as E by a coupling constant value of 3JH9−H10 15 Hz and the H-9/H-14 nOe suggested a trans-epoxide. To the best of our knowledge, only two compounds of the bisabolene family with were reported with an epoxide at C-7/C-8.10 The similarity in the 1H and 13C NMR chemical shifts for C-14, C-7 and C-8 confirmed the relative configuration of the epoxides. We therefore propose that 4 is a mixture of two epimers at C-11 in a 1
:
1 ratio. The ECD spectrum of 4 did display a small Cotton effect that could be explained by an enantiomeric excess of one or the two epimers. However, at that stage it was not possible to separate the epimers and therefore confirm this assumption. Consequently, bubaridin D (4) is a mixture composed of two non-racemic epimers (7R*, 8R*, 11R*) and (7R*, 8R*, 11S*).
The chemical formula C15H24NO3 of compound 5 was deduced from the protonated ion at m/z 266.1760 [M + H]+ in the (+)-HRESIMS spectrum. The 1H and 13C NMR spectra of 5 were similar to those of 4 (Tables 1 and 2) with characteristic rotamers due to the formamide in a ratio 3:
1 (endo/exo), the epoxy group at C-7/C-8 and the double bond at C-9/C-10. A difference was noticed in the absence of the AB system of the primary alcohol. Instead, a methyl ketone was evidenced by a key HMBC correlation from the methyl H3-12 (δH 2.28, s) to C-10 and C-11 (δC 200.1). The large 3J-coupling constant value of 16 Hz between H-9 and H-10 confirmed the E configuration of the double bond. In this case, no Cotton effect was observed in the ECD spectrum of 5, suggesting bubaridin E (5) to be a racemic mixture.
The molecular formula of 6, was found to be C15H27NO2 by the proton adduct at m/z 250.1818 [M + H]+ in the (+)-HRESIMS spectrum. Compound 6 displayed the rotameric signals in a ratio 3:
1 (endo/exo) characteristic of the formamide, and the same methoxy ketone C-11 (δC 202.1) and CH3-12 (δH 2.28 and δC 27.2) as compound 5 (Tables 1 and 2). The molecular formulae of compounds 5 and 6 differed by the number of oxygens, with one less oxygen for 6. A second and trisubstituted double bond was evidenced in 6 by the signals at δC 157.0 (C-7) and δH 6.12 (d, J = 11.5 Hz, H-8)/δC 123.5 (C-8) suggesting the replacement of the epoxide of 5 by a double bond in 6. The H-8/H-9/H-10 COSY correlations confirmed the conjugated dienic system and the H3-14/C-7, C-8 and C-9 HMBC correlations its location. The coupling constant value 3JH9−H10 15.5 Hz proved the E configuration for the double bond and the H-9/H3-12/H3-14 nOe correlations were indicative of a E configuration for the second double bond and s-trans configuration for the conjugated diene system with H3-12, H3-14 and H-9 on the same side. Bubaridin F (6) is therefore achiral.
Compound 7 was obtained as colourless oil with a chemical formula C32H46N2 deduced from the protonated molecular peak at m/z 459.3723 [M + H]+ in the (+)-HRESIMS spectrum. A first inspection of the 1H NMR (Table 3) and HSQC spectra revealed the presence of six methyl singlets, and five olefinic methines. The signals of two methylenes integrating for four hydrogens were assigned to two symmetrical cyclohexane rings. Taking also into consideration the molecular formula, these NMR data were consistent with a dimeric nature for compound 7. The lack of apparent “doubling” of the signals and the presence of equivalent methylenes for the cyclohexane rings were then indicative of an absence of formamides on the rings and chiral centers close to the rings. A closer inspection of the 13C NMR, COSY and HMBC spectra confirmed this assumption. The shielded methyl H3-15 at δH 0.89 exhibited key H3-15/C-10, C-11, C-12 and C-9′ HMBC correlations and allowed a connection of both bisabolene subunits through the C-9′/C-11 bond. For the first bisabolene subunit, a conjugated diene system formed by the double bonds at C-10/C-9 and C-8/C-7 were linked to the methine C-6 of the cyclohexane ring through the H-8/H-9/H-10 COSY-correlations and the key H3-14/C-6, C-7 and C-8 HMBC correlations. For the second bisabolene unit, the methine at δH 2.82 (br d, J = 10.0 Hz, H-9′) was connected to the double bond at C-8′/C-7′ and then with the other cyclohexane ring due to the H-8′/H-9′/H-10′ COSY correlations and the H3-14′/C-6′, C-7′ and C-8′ HMBC correlations. In addition, the key H3-15′/C-10′, C-11′ and C-12′ HMBC correlations linked the bis-allylic methine C-9′ to another olefinic bond at C-10′/C-11′ and then to the methylene H2-12′ (δH 1.94). Finally, H2-12′ was COSY correlated to H2-12 (δH 1.54) of the first bisabolene. Thus, the two monomers were connected through the C-12/C-12′ and C-11/C-9′ bonds, which formed the bis-bisabolene skeleton previously described in compounds isolated from the sponge Axinyssa variabilis.14 Finally, two isocyanides with a characteristic signals at δC 152.4 were located at C-3 and C-3′ of both bisabolenes based on the molecular formula and mass fragments at m/z 432 and 405 in the (+)-HRESIMS, indicating the loss of one or both units respectively. The configuration of the conjugated double bonds at C-9/C-10 and C-7/C-8 were established as E and the diene as s-trans by the 3JH8-H9 of 15.5 Hz, and the H3-14/H-9 and H-10/H-8 nOe correlations. The clear H3-15/H-8′ and H-10/H-9′ nOe correlations determined the trans orientation of the methyl H3-15 and the proton H-9′. Additional H-8′/H-6′ as well as H-9′/H-14′ nOe correlations led to the E configuration for the trisubstituted double bond of the second bisabolene. Based on chemical shifts and nOe correlations similar to those of the monomers, the same relative configurations were assumed for the cyclohexanes, with the isocyanide functional group in a trans relative configuration with the linear chain. With regard to the absolute configurations at the chiral centers C-11 and C-9′, no Cotton effects were displayed in the ECD spectrum and the weak optical rotation led to the conclusion that trans-dimer theonellin isocyanide (7) is a racemic mixture of the enantiomers 11R*, 9′R*.
No. | 7 | 8 |
9
Endo/exo (1![]() ![]() |
|||
---|---|---|---|---|---|---|
δ H, mult. (J in Hz) | δ C | δ H, mult. (J in Hz) | δ C | δ H, mult. (J in Hz) | δ C | |
a Data from HSQC, overlapped. | ||||||
1/5a | 1.70a, m | 26.7, CH2 | 1.68a, m | 26.7, | 1.62, m | 27.5, CH2 |
1/5b | 1.41a, m | 1.41a, m | CH2 | 1.43, m | ||
2/4a | 1.90, m | 38.3, CH2 | 1.93, br d (13.0) | 38.5, | 1.96/1.77, m | 37.0/39.6, CH2 |
2/4b | 1.83, m | 1.83, td (12.5, 3.5) | CH2 | 1.67a/1.54, m | ||
3 | — | 57.0, C | — | 56.8, C | — | 54.0/52.8, C |
6 | 1.96, m | 44.9, CH | 1.97, m | 45.1, CH | 1.89, tt (12.0, 3.5) | 46.4, CH |
7 | — | 138.6, C | — | 138.4, C | — | 139.2, C |
8 | 5.78, br d (10.5) | 124.6, CH | 5.79, br d (10.5) | 124.7, CH | 5.81, dd (10.5, 4.0) | 124.2, CH |
9 | 6.16, dd (15.5, 10.5) | 122.5, CH | 6.14, dd (15.5, 10.5) | 123.77, CH | 6.16, ddd (15.5, 10.5, 2.0) | 123.9, CH |
10 | 5.62, d (15.5) | 143.2, CH | 5.71, d (15.5) | 139.6, CH | 5.71, dd (15.5, 10.0) | 139.2, CH |
11 | — | 37.9, C | — | 38.1, C | — | 38.1, C |
12 | 1.54, m | 33.6, CH2 | 1.62, br d (13.0) | 34.1, CH2 | 1.63a, m | 34.1, CH2 |
1.56, td (13.0, 6.5) | 1.53, m | |||||
13 | 1.42, s | 25.2, CH3 | 1.44, s | 25.2, CH3 | 1.39/1.32, s | 22.6/25.0, CH3 |
14 | 1.70, s | 15.3, CH3 | 1.69, s | 15.3, CH3 | 1.72/1.71, s | 15.3, CH3 |
15 | 0.89, s | 21.0, CH3 | 1.01, s | 25.7, CH3 | 1.02, s | 25.7, CH3 |
16 ![]() ![]() |
— | 152.4, C | — | 152.4, C | 8.05, d (1.0)/8.32, d (12.0) | 160.4/162.7, CH |
–NH | 5.19, br d/5.64, br d (12.0) | — | ||||
1′/5′a | 1.70a, m | 26.7, CH2 | 1.65a, m | 26.4, CH2 | 1.62, m | 27.5, CH2 |
1′/5′b | 1.41a, m | 1.44a, m | 1.43, m | |||
2′/4′a | 1.90, m | 38.3, CH2 | 1.83, m | 37.7 CH2 | 2.02a/1.83, m | 37.0/39.6, CH2 |
2′/4′b | 1.83, m | 1.75, m | 1.72a/1.57a, m | |||
3′ | — | 57.0, C | — | 57.1, C | — | 54.0/52.8, C |
6′ | 1.96, m | 44.9, CH | 1.97, m | 44.1, CH | 1.89, tt (12.0, 3.5) | 46.4, CH |
7′ | — | 137.9, C | — | 137.2, C | — | 138.2, C |
8′ | 4.97, br d (10.0) | 125.1, CH | 4.91, d (10.0) | 126.2, CH | 4.93, t (9.0) | 126.0, CH |
9′ | 2.82, br d (10.0) | 43.3, CH | 2.75, d (10.0) | 44.8, CH | 2.74, d (9.0) | 44.7, CH |
10′ | 5.06, br s | 123.9, CH | 5.06, br s | 123.81, CH | 5.07, br s | 124.0, CH |
11′ | — | 133.1, C | — | 133.2, C | — | 133.0, C |
12′a | 1.94, m | 27.8, CH2 | 2.00, m | 28.0, CH2 | 2.01a, m | 28.0, CH2 |
12′b | 1.94, m | 1.94, m | ||||
13′ | 1.43, s | 25.6, CH3 | 1.36, s | 26.0, CH3 | 1.43, d (3.0)/1.36, s | 22.6/25.0, CH3 |
14′ | 1.56, s | 15.3, CH3 | 1.58, s | 15.2, CH3 | 1.59/1.58, s | 14.9, CH3 |
15′ | 1.65, br s | 23.5, CH3 | 1.66, br s | 23.5, CH3 | 1.66, br s | 23.5, CH3 |
16′ ![]() ![]() |
— | 152.4, C | — | 152.4, C | 8.04, d (2.0)/8.30, d (12.0) | 160.4/162.7, CH |
NH | 5.19, br d/5.64, br d (12.0) | — |
Compound 8 was isolated as a colourless oil and exhibited the same chemical formula as 7, C32H46N2 as shown by HRESIMS analysis. The 1H and 13C NMR spectra showed very similar signals with slight differences in the chemical shifts especially for the signals of protons located around the central cyclohexene. The main differences were identified for the signals of the methylene H2-12 (δH 1.62 and 1.56) and H2-12′ (δH 2.02 and 1.94). Together with the H3-15/H-9′ and H-10/H-8′ nOe correlation, these changes were in accordance with a change in the relative configuration between the methyl H3-15 and the proton H-9′ which would be cis for compound 8. Based on biosynthetic considerations and similar nOe correlations, the rest of the molecule was considered to have the same configurations as 7. Furthermore, the cis-dimer theonellin isocyanide (8) was also found to be a racemic mixture of the enantiomers 11S*, 9′R* as the ECD and optical rotation analyses did show only very weak absorbance.
The molecular formula C32H50N2O2 for compound 9 was obtained from the proton adduct [M + H]+ at m/z 495.3967 in the (+)-HRESIMS spectrum. After inspection of its 1H and 13C NMR spectra, 9 was found to have the same skeleton as 8. However, the apparent “doubling” of most of the signals around the terminal cyclohexane rings and the presence of formyl peaks at δH 8.05 (d, J = 1.0 Hz, H-16, endo) and 8.32 (d, J = 12.0 Hz, H-16, exo), and also at δH 8.04 (d, J = 2.0 Hz, H-16′, endo) and 8.30 (d, J = 12.0 Hz, H-16′, exo) evidenced the presence of amide rotamers in a 1:
1 ratio. Therefore, both isocyanides of 8 were replaced by two formamides in 9, a modification confirmed by the key H-16/C-3 and H-16′/C-2′/4′HMBC correlations. The H3-15/H-9′/H-8′, H-10/H-8′ nOe correlations, indicated also a cis relative configuration between the methyl C-15 and the proton H-9′. The absence of Cotton effects in the ECD spectra and the weak optical rotation suggested that cis-dimer theonellin formamide (9) was also a racemic mixture of the enantiomers 11S*, 9′R*.
In the marine environment, nitrogen-functionalised terpenes are almost exclusively found in sponges and nudibranchs that feed on them.15 These metabolites possess a terpene scaffold bearing a nitrogen-containing functional group, the most common being isocyanide (–NC), isocyanate (–NCO), isothiocyanate (–NCS) or formamide (–NH-CHO), but also dichloroimine, carbamate, urea or amine.16 This growing class of metabolites (over 300 to date) includes mainly sesquiterpenoids and diterpenoids that contain one or up to three nitrogenous functions around a variety of terpene skeletons. In the case of the Bubarida sponge studied here, all new compounds possess the same bisabolene skeleton characterised by a 3,6-methylalkyl disubstituted cyclohexane ring and a nitrogen always substituted at the position C-3 (mainly formamide).17 The intriguing biosynthesis of N-functionalized terpenes, and particularly the origin of these functional groups, has been questioned since the first report of a marine isocyanide, axisonitrile-1, in 1973.18 Several biosynthetic feeding experiments with sponges maintained in aquaria have confirmed the incorporation of cyanide ions into the terpene skeleton, but the source of the cyanide is still questionned.15,16 The main hypothesis remains that these terpenes are products of enzymatic processes by the host sponges, but microbial symbionts could be involved in the production or incorporation of the cyanide, as cyanogenesis has been well documented in bacteria.19 Moreover, the interconversion of the precursors isocyanide-thiocyanate has been demonstrated in Axinyssa sp.,20 but their transformation to formamide or amines has not been investigated in detail. It is also possible that the isocyanide is transformed into the formamide functional group through acid hydrolysis.14,21 In our case, the formamide derivatives 1–6 and 9 were also found in the extract as demonstrated by the UHPLC-HRMS profiles which suggests that these metabolites were naturally present in our specimens. From a biosynthetic point of view, the diversity of metabolites found in this sponge suggests the presence of a pathway linking all metabolites with theonellin isocyanide as a precursor (Scheme 1). A highly reactive conjugated triene would be a key intermediate towards the oxidised monomers but also the dimers through a Diels–Alder reaction. A racemic epoxidation on the terminal vinylic group of this triene will first lead to the unusual oxygenated side chain at C-12. The opening of the epoxide through hydrolysis will lead to the vicinal diol of 3 containing an unstable tertiary alcohol. Three different pathways could then be envisaged: (i) a second epoxidation would lead to the epimeric mixture of 4; (ii) the migration of a carbocation through the diene would lead to 2 and then 1 after oxidation into an aldehyde; (iii) an oxidative cleavage of the terminal diol would yield the unusual conjugated ketone of 5 and 6. The presence of racemic mixtures suggest that oxidation processes are not chiral or that a racemisation occurs at the tertiary oxygenated carbons C-7 and C-11. Interestingly, the skeleton of the dimers 7–9 has already been reported but without nitrogen substitution.14 The identification of the cis and trans dimers 7 and 8 suggest that the Diels–Alder reaction responsible for the linkage of both monomers is not fully stereoselective therefore questioning the enzymatic process. The lack of overall stereoselectivity in all these biosynthetic steps is intriguing and would require further biosynthetic studies. The presence of highly reactive tertiary oxygenated carbons on the side-chain of the bubaridins were prone to some interconversion during the extractive process. We therefore carried out a reactivity test using the substrate theonellin formamide which was isolated in large quantity and contained the reactive diene. Theonellin formamide was dissolved in DMSO-d6 slightly acidified with TFA and exposed to a flow of air during 7 days at room temperature. The results showed a slow transformation of theonellin formamide in other derivatives, but the 1H NMR spectrum of the resulting mixtures did not result in the formation of any of the isolated metabolites 1–9. As we were also able to annotate the isolated metabolites in the chromatogram from the UHPLC-MS/MS analysis of the methanolic fraction obtained before purification, a natural rather than artefactual origin of the bubaridins is demonstrated. Compound 3 is an exception as it was readily converted into 1 during the NMR analyses performed in CDCl3. Thus, 2 and 1 are likely produced after isomerisation and then oxidation of 3.
Our study also provided some chemotaxonomic insights into the classification of this sponge. Our DNA analyses firmly placed Bubarida sp. 1 MMR-2021 in the order Bubarida. All three specimens were resolved in a single well-supported clade (PP: 1; BP: 97) for the LSU (28S) gene. This clade was sister to the recently identified specimen collected from Hawaii, Bubarida sp. 2 JV-2020.22 These taxa combined were resolved within a larger clade shared with taxa currently assigned to the order Bubarida such as species of Acanthella, Dictyonella, Bubaris. The sister relationship between Bubarida sp. 1 MMR-2021 and Bubarida sp. 2 JV-2020 indicate that these specimens represent closely related but distinct taxa. The presence of nitrogenous bisabolenes in this species provided further meaningful insights into its classification. As mentioned earlier, there are only two reports of bisabolene dimers with the same cyclised skeleton named cis and trans dimers which have been previously isolated from Axinyssa variabilis (Order Suberitida) and Lipastrotethya ana (Order Bubarida, family Dictyonellidae).14,23 Interestingly, the authors pointed out that similar metabolites were not present in other species of Axinyssa. The family Dictyonellidae is currently represented by seven genera (Acanthella, Axinyssa, Cymbastela, Dictyonella, Lipastrotethya, Phakettia and Rhaphoxya), of which four (Acanthella, Axinyssa, Cymbastela, Dictyonella) have been sequenced for the 28S gene and one (Phakettia) for the COI gene. Our species did not cluster with any of the sequenced genera in the family Dictyonellidae but does produce nitrogenous bisabolene common in this family. However, as relationships within the order are likely to be revised as more sponge taxa are sequenced, especially from understudied regions of the world,24 ascribing taxa into families or genera at this stage would be premature. Nevertheless, based on our current understanding of sponge diversity and available sequences for comparison, our new species is resolved as a member of the Bubarida. Indeed, further taxonomic work will be required to clarify whether Bubarida sp. 1 MMR-2021 represents a new species, genus, or family or is merely the first barcode of a known taxon. We therefore encourage future studies on sponge natural products to provide DNA barcodes as a minimum in cases where names cannot be accurately assigned to taxa.
Bisabolene nitrogenous terpenes have been largely studied for their interesting biological activities such as cytotoxicity, antimicrobial and anti-malarial activity.25 The methanolic fraction of the sponge showed significant antifungal and cytotoxic activities against several tumoral cell lines. All the isolated compounds except the unstable bubaridin C (3) and 7-isothiocyanato-7,8-dihydro-α-bisabolene, were then evaluated against a fungal targeted panel of microbial pathogens, including the fungi Candida albicans, C. glabrata, C. krusei, C. parapsilosis, C. tropicalis, and Aspergillus fumigatus, the Gram-positive bacteria methicillin-sensitive Staphylococcus aureus (MSSA), and the Gram-negative bacteria Escherichia coli and Acinetobacter baumannii. In addition, the dimeric compounds 7–9 and N,N‘-bis[(6R,7S)-7-amino-7,8-dihydro-α-bisabolen-7-yl] were evaluated against five tumoral cell lines and none of the compounds tested displayed significant activity, indicating the selective antifungal bioactivity. Remarkably the dimer 7 exhibited potent antifungal activity against C. albicans, C. glabrata, C. parapsilosis and A. fumigatus with MIC values of 32, 1, 8 and 32 μg mL−1, respectively. Compounds 8 and N,N′-bis[(6R,7S)-7-amino-7,8-dihydro-α-bisabolen-7-yl] displayed moderate activity against C. glabrata with MIC values of 16–32 and 32 μg mL−1 respectively, while aureol presented a MIC of 16 μg mL−1 against MSSA. The other isolated metabolites did not display any significant bioactivity at the highest concentrations tested. Further analysis of the dose–response curves of compounds 7 and 8 against the five Candida species allowed a closer comparison of the antifungal activity. This revealed low micromolar AC50 values (Table 4) for both 7 and 8 against C. albicans, C. glabrata, and C. parapsilosis, and a lack of activity against C. krusei, and C. tropicalis. This also indicated that the trans configuration of the central ring present in 7, led to a greater potency of an order of magnitude. Furthermore, all compounds with a formamide functional group did not exhibit noticeable antifungal activity while 7 and 8 with an isocyanide were found to exhibit potent activity. Therefore, both the configuration and the nitrogen function of the bisabolene dimers have a strong influence on the antifungal activity. Previous structure–activity studies on nitrogenous bisabolene derivatives indicated a different mechanism of action when compared to the allylamine class of antifungal agents, although only moderate activity was reported for the former compounds.26 Compound 7 displayed a greater antifungal activity, with MIC values 10 fold lower than the other family of compounds, and a significant activity similar to the control amphotericin B. This potent and selective activity, along with a new possible mechanism of action, suggests that trans-theonellin isocyanide 7 is a promising lead antifungal candidate.
Compound | MIC and AC50 (μM) | ||||
---|---|---|---|---|---|
C. albicans | C. glabrata | C. parapsilosis | C. tropicalis | C. krusei | |
Note: First values are MIC and values in brackets are AC50 values calculated from dose–response curves. | |||||
7 | 70 [1.6] | 2.0 [1.6] | 17 [1.8] | 140 [107] | >140 [136] |
8 | >140 [12] | 70 [8.1] | 140 [18] | >140 | >140 |
Amphotericin B | 2.0 [1.1] | 2.0 [0.85] | 4.0 [1.4] | 4.0 [0.93] | 2.0 [2.5] |
The CH3OH fraction revealed interesting metabolites on the chemical profiles, and was further separated into 14 subfractions via semipreparative RP-HPLC (Waters Xselect phenyl-hexyl column, 5 μm; 10 × 250 mm; flow rate 4.0 mL min−1, λ = 210 nm) using a gradient of solvents (A) H2O and (B) CH3CN (0–5 min 70% B, 20–30 min 90% B, 31–36 min 70% B) to give theonellin formamide (28.7 mg, 5.71 × 10−2% w/w), N,N′-bis[(6R,7S)-7-amino-7,8-dihydro-α-bisabolen-7-yl] (42.4 mg, 8.43 × 10−2% w/w) and compound 8 (7.0 mg, 1.39 × 10−2% w/w). The analytical separation of subfraction 3 (19.5 mg) by RP-HPLC (Waters Symmetry C18, 5 μm; 4.6 × 250 mm; flow rate: 1 mL min−1, λ = 210 nm) using a gradient of solvents (A) H2O and (B) CH3CN (0–5 min 15% B, 20–30 min 30% B, 31–36 min 15% B) afforded the compounds 4 (0.3 mg, 5.96 × 10−4% w/w), 2 (0.4 mg, 7.95 × 10−4% w/w), 3 (0.5 mg, 9.94 × 10−4% w/w), 1 (0.4 mg, 7.95 × 10−4% w/w), 5 (0.6 mg, 1.19 × 10−3% w/w), and 6 (0.6 mg, 1.19 × 10−3% w/w). The subfraction 7 was purified through semipreparative RP-HPLC (Phenomenex Synergi Fusion RP column, 4 μm; 10 × 250 mm; flow rate 4.0 mL min−1, λ = 210 nm) with an isocratic composition of solvents H2O/CH3CN (33:
66 v/v, 36 min) to yield theonellin formamide (0.6 mg, 1.19 × 10−3% w/w) and 9 (5.0 mg, 9.94 × 10−4% w/w). The semipreparative purification of subfraction 8 using the same method as for fraction 7 gave the compound aureol (0.5 mg, 9.94 × 10−4% w/w). Subfraction 10 was separated with an isocratic composition of solvents H2O/CH3CN (32
:
68 v/v, 50 min) to afford the compound 7-Isothiocyanato-7,8-dihydro-α-bisabolene (0.2 mg, 3.97 × 10−4% w/w), and other minor and unstudied bisabolene derivatives. The subfraction 13 was purified through analytical RP-HPLC (Waters Symmetry C18, 5 μm; 4.6 × 250 mm; flow rate: 1 mL min−1, λ = 210 nm) with an isocratic composition of solvents H2O/CH3CN (16
:
84 v/v, 45 min) to separate the compounds 7 (5.4 mg, 1.07 × 10−2% w/w) and 8 (7.0 mg, 1.39 × 10−2% w/w).
The cell viability test against five different human cancer cell lines (A549 (lung carcinoma), A2058 (metastatic melanoma), MCF7 (breast adenocarcinoma), MIA PaCa-2 (pancreatic carcinoma), and HepG2 (hepatocyte carcinoma)) was based on the MTT (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide) assay.30 Ten ½ serial dilutions starting at a concentration of 20 μg mL−1 in triplicate were tested for each compound. IC50 was determined as previously described.31
Footnote |
† Electronic supplementary information (ESI) available. See DOI: 10.1039/d1ob02297k |
This journal is © The Royal Society of Chemistry 2022 |