Dan-Dan
Su
ab,
Karim
Aissou
a,
Yan
Zhang
c,
Virginie
Gervais
d,
Sebastien
Ulrich
*b and
Mihail
Barboiu
*a
aInstitut Européen des Membranes, Adaptive Supramolecular Nanosystems Group, University of Montpellier, ENSCM-CNRS, Place E. Bataillon CC047, Montpellier, F-34095, France. E-mail: mihail-dumitru.barboiu@umontpellier.fr
bInstitut des Biomolécules Max Mousseron (IBMM), CNRS, Université de Montpellier, ENSCM, Montpellier, France. E-mail: sebastien.ulrich@cnrs.fr
cKey Laboratory of Carbohydrate Chemistry and Biotechnology, Ministry of Education, School of Pharmaceutical Sciences, Jiangnan University, 1800 Lihu Avenue, Wuxi, 214122, P.R. China
dUniversité Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), 91198, Gif-sur-Yvette, France
First published on 25th April 2022
Carbonic anhydrase is an essential enzyme that catalyzes the hydration/dehydration of carbon dioxide, which is highly relevant to carbon capture processes. However, its efficient encapsulation in host materials is of utmost importance for the system performance (durability, stability, and efficiency). In this paper we demonstrate that polyethyleneimine–polyethylene glycol squalene constitutional nanoparticles PEI–DCFs, synthesized via reversible imine/amino-carbonyl chemistry, are efficient host matrixes for bovine carbonic anhydrase (bCA) encapsulation. This system showed an impressive one-order-of-magnitude-improved catalytic proficiency (kcat/Km = 7396 M−1 s−1) as compared to bCA alone (kcat/Km = 504 M−1 s−1). This performance rivals the current state-of-the-art systems with equivalent amounts of the enzyme, even after heating for a prolonged period at 80 °C, translating into its direct application for enhancing carbon dioxide capture and conversion.
During the past decades, the use of carbonic anhydrases (CAs) for CO2 hydration and storage has attracted attention due to its high turnover rate, its environmentally benign properties and wide sources.5 CAs are already exploited in artificial systems for applications in CO2 hydration/dehydration,6,7 CO2 hydrogenation8 or CO2 conversion to methanol.9 A wide range of materials have been used for CA immobilization in order to improve its tolerance to hazardous conditions such as high temperature (up to 80–100 °C), high acidity, etc., but also to maintain its efficiency when embedded in artificial matrix hosts.10 Nanotechnology has the potential to address this problem. Indeed, multivalent binders can lead to interfacial interactions/stabilization with the enzyme while also promoting its encapsulation in nano-bioreactors or biomimetic protocells. The high surface-to-volume ratio and the controllable display of binding/reactive groups have been used in artificial11 and CA-based catalytic nanoparticles.12,13
The catalytic center of CAs contains a zinc-binding pocket and a hydrophobic binding pocket. In the catalytic cycle of CA, hydroxyl ions are produced under neutral pH conditions to generate bicarbonate upon reaction with CO2. Protons are therefore byproducts which are expelled out of the catalytic center in a rate-limiting step.14,15 While most of the host materials developed hitherto inhibit the catalytic activity of CAs either by altering the enzyme conformation or by hindering the access of the substrates to the catalytic center, a few recent systems showed an enhancement of catalytic activity instead. This peculiar behavior is best understood by the host facilitating the proton shuttle out of the active site.16 We previously reported interesting results in that direction using dynamic constitutional frameworks (DCFs) which adaptively stabilize a microenvironment through confining H-bonding or electrostatic interactions on the outer enzyme surface and play the role of multi-proton sponges, both essential for an effective catalytic activation mechanism.17,18 In this case, CA can be activated by simple addition of building blocks in aqueous solution, which are easily and modularly self-assembled via reversible covalent bonds on the external enzyme surface.19
On the other hand, solid absorbents, made with polyethyleneimine (PEI) loaded on different porous substrates, are promising materials for carbon dioxide capture.20 The gas absorption/transport mechanism is based on the same hydrolytic reaction as performed by CA, which may further convert CO2 into carbamic acid and/or bicarbonate at the secondary amine sites of PEI in the presence of water. This makes PEI one of the highly performing nanomaterials for CO2 capture from flue gas or air.
Herein, we report a novel strategy, aimed to be as simple and broadly applicable as possible relating to the encapsulation of bovine carbonic anhydrase (bCA) within a polyethyleneimine (PEI)–DCF nanoparticles with enhanced catalytic activity. This results in the production of scalable biomimetic DCF–bCA nanoparticles that remarkably outperform the classical bCA activity in solution and combine the extraordinary absorption capacity of PEI materials.20 This study leads to a greater fundamental understanding of how CA incorporation can be optimized at the nanoscale to simultaneously stabilize and activate the overall catalytic cycles of a DCF–PEI–bCA system operated under harsh conditions, as required by industrial CO2 capture processes. The relatively straightforward development of DCF–PEI–bCA nanoparticles is a very important and previously unreported strategy. They are operating synergistically to give enhanced catalytic turnovers, higher that those resulted from the sum of the former components that are relevant to their subsequent use in larger scale applications as absorbent materials or membranes.
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Fig. 1 a) Schematic representation of molecular components used to construct multivalent dynamic constitutional frameworks (DCFs) for bovine carbonic anhydrase (bCA) immobilization in hybrid nanoparticles. The four-component DCFs are synthesized step-wise through imine/amino-carbonyl chemistry, and different cationic headgroups (bPEI800, PEH, and TAA), shown in orange, were tested. b) Fluorescence spectra showing the quenching of bCA upon addition of increasing amounts of DCF–PEI (top) or bPEI800 (bottom). c) Stern–Volmer plots23 of relative fluorescence intensity versus cationic monomer concentration present in free and DCF bonded forms in solution, used for the determination of the Stern–Volmer constant (Ka) between bCA and DCFs/PEI monomer. |
Isothermal titration calorimetry (ITC) experiments were carried out in parallel (either by titrating the enzyme with ligands or by titrating ligands with bCA) and revealed marked differences (Table 1). While DCF–PEI, DCF–PEH, and bPEI800 were found to be similarly potent binders of bCA with association constants in a narrow range of 0.93–1.02 × 106 M−1, notable differences in thermodynamic behavior were observed. DCF–PEI with its cationic superiority leads to the most pronounced enthalpic contribution compared to DCF–PEH. DCF–TAA with the smallest cationic group gives the largest entropy change including contributions of the solvent entropy and the protein conformational entropy. The difference with the above fluorescence analysis indicates that binding (measured by ITC) is not correlated with the structural changes (monitored by intrinsic fluorescence measurements) of the enzyme. Altogether, these results show that the multivalency displayed by the DCF with the largest cationic group PEI (DCF–PEI) triggers the most drastic structural changes in bCA, through enthalpy- and entropy-driven binding, which may affect the catalytic efficiency of the enzyme. On the other hand, DCF–TAA with the smallest cationic group was found to be the most potent binder, with an association constant of 7.14 × 106 M−1 and a reaction mainly driven by entropy, but it does not trigger structural changes within the bCA enzyme according to the fluorescence assay.
Samples | K d (μM) | K a (106 M−1) | ΔH (kcal mol−1) | −TΔS (kcal mol−1) |
---|---|---|---|---|
DCF–PEI | 1.04 ± 0.66 | 0.96 | −3.39 ± 0.32 | −4.77 |
DCF–PEH | 1.07 ± 0.82 | 0.93 | −0.86 ± 0.10 | −7.28 |
DCF–TAA | 0.14 ± 0.44 | 7.14 | −0.15 ± 0.04 | −9.22 |
bPEI800 | 0.98 ± 0.84 | 1.02 | −0.22 ± 0.04 | −7.97 |
In order to further elucidate their aggregation behaviors, the bCA/DCF bioconjugates were imaged by atomic force microscopy (AFM) (Fig. 2d–f and S8†). The AFM topography images of DCF–PEI with bCA (Fig. 2d), DCF–PEH with bCA (Fig. 2e) and DCF–TAA with bCA (Fig. 2f) showed homogeneous particles over the entire samples, with no sign of aggregation. The apparent sizes of all samples were found to be below 200 nm, which is in good agreement with the DLS results, revealing the uniform particle distribution.
The transmission electronic microscopy TEM showed that the DCF–PEI (Fig. 2g) and DCF–PEI with bCA (Fig. 2h) had an aggregated morphology with an average overall size of 200 nm for all formulations. Similar results were obtained in previous studies on PEI decorated nanoparticles for gene delivery.25,26 Our results are in accordance with the DLS data, confirming the narrow particle size distribution of the aggregates, which was observed by TEM. DCF–PEI is obtained via aggregation of several discrete brighter and darker nanoparticles, most probably formed by segregation of squalene and PEG–PEI components, respectively, self-assembled via reversible covalent interactions at the interfaces between nanoparticles. Interestingly DCF–PEI exhibited a more complex core and shell morphology when bCA is added. The aggregates were composed of a darker central core of ∼50 nm and of a surrounding corona, in which well-defined and homogeneously distributed brighter nanoparticles can be identified (Fig. 2h). These white grey spots of ∼5 nm are hypothesized to be mostly composed of bCA for which the crystallographic data suggest an overall ellipsoid shape with the dimensions of 4 × 4 × 5 nm.27
The dark color of the bPEI800–bCA samples suggested that strong electrostatic aggregation occurred between bPEI800 and bCA, homogeneously distributed within dense nanoparticles. In contrast the DCF–PEI with the bCA sample showed that larger voids and bright less dense spots can be observed inside these hybrid samples when compared with the pristine PEI sample micrographs, where very few or no bright spots were seen.
The nano-structural distribution of dense and light regions within the DCF–bCA aggregates is essential to control the catalytic enzymatic performance, since they determine the pathways for the substrate flow and diffusion across the active nanoparticle.
We then hypothesized that combining an increasing number of PEI with bCA in hybrid bioconjugates would lead to strong synergistic improvement of the catalytic turnover and enzyme protection within a multicharged environment. When combined with bCA, important enhancements of catalytic activity were observed for DCF–PEI and bPEI800. In the presence of bCA, the multivalent DCF–PEI system reaches an important ∼5.8-fold increase of catalytic activity at 0.2 mM (Fig. 3a). Compared with that, bPEI800 reached a ∼2.4-fold increase in catalytic activity in the presence of bCA. In contrast, the enhancements of activity are very moderate when PEH, DCF–PEH, (Fig. 3b) and TAA, DCF–TAA (Fig. 3c) have been added to bCA, with a maximum of ∼1.8-fold increase in catalytic activity observed for DCF–PEH at 0.2 mM of PEH.
Synergistic activity was calculated by using the following equation: N = A1/(A0 + A2), where A1 is the absorbance measured with DCF or a cationic monomer with bCA at 4 min, A0 is the absorbance measured with CA alone at 4 min, and A2 is the absorbance measured with DCF or a monomer alone at 4 min (Fig. 3d). It is worthy to note that the synergistic activity of DCF–PEI and DCF–PEH is strongly dependent on the nature and the concentration of bPEI800 and PEH monomers and shows that the multivalent effect of enzyme encapsulation by DCFs and enhanced enzyme activity play a role in the overall catalytic process.
The catalytic activity was then quantified by determining Km, equal to the substrate concentration at half of the maximum rate Vmax, which were both determined by fitting the data with the Michaelis–Menten model. The observed ∼2-fold decrease of Km for DCF–PEI with bCA (Km = 2.08 mM) or bPEI800 with bCA (Km = 1.68 mM) as compared to bCA alone (Km = 3.13 mM) reveals the stronger affinity with the bCA enzyme under DCF confinement. In contrast, DCF–PEH, DCF–TAA, PEH, and TAA show much greater Km values (Table 2), meaning lower binding affinity which is in line with all results presented above. A proficiency constant (kcat/Km) is used to measure the catalytic efficiency of the enzymatic biohybrids. Since the proficiency constant reflects the affinity and catalytic ability of the enzyme to the substrate at the same time, it can be used to compare the catalytic efficiency of different enzymes for a specific substrate (Fig. 4a, Table 2). With kcat/Km values of 7396 and 6630 M−1 s−1 for DCF–PEI with bCA and bPEI800 with bCA, respectively, these two systems clearly stand out, being one order of magnitude more powerful catalysts than all others tested, including bCA alone. It was obvious that DCF/cationic monomer with bCA presents higher catalytic efficiency, with an estimated kcat range of 2.49 s−1 to 15.36 s−1 compared to the reaction rate k of DCF/monomer without bCA (Table S2†), emphasizing a significant catalytic effect. These results are in agreement with previous results, when the enzymatic activity of hCAII is slightly inhibited by its immobilization of PEI/polydopamine layers31 or by the absorption on positively charged polystyrene nanoparticles that do not inhibit the enzyme.32
Samples | K m (mM) | k cat (s−1) | k cat/Km (M−1 s−1) |
---|---|---|---|
Enzyme DCF | Enzyme DCF | Enzyme DCF | |
DCF–PEI | 2.08 | 15.36 | 7396 |
DCF–PEH | 4.20 | 3.79 | 902 |
DCF–TAA | 3.71 | 2.49 | 672 |
Samples | Enzyme monomer | Enzyme monomer | Enzyme monomer |
---|---|---|---|
bPEI800 | 1.68 | 11.12 | 6630 |
PEH | 3.36 | 2.77 | 826 |
TAA | 3.31 | 3.24 | 978 |
bCA | 3.13 | 1.58 | 504 |
The exceptional activation effects observed with DCF–PEI or bPEI800 with bCA strongly demonstrate the importance of a critical number of ethylene imine units and more importantly shed light on their multivalent presentation within DCFs. They can strongly increase the activity of bCA up to one order of magnitude under confinement within a dynamic microenvironment. Moreover, while direct interactions of monomeric PEI groups with the internal enzyme active site can lead to enzyme activation, the activation mechanism observed with nanometric hybrids is mostly related to the external binding of larger DCF–PEI. The multivalent network of PEI substituents mostly accelerates outwardly the proton-transfer step via amino groups and are equally conferring a dynamic crowding microenvironment for the enzyme activation.
The bCA aggregation driven by intermolecular hydrophobic interactions is one of the problems that hinder its use in real applications. The confinement within a protecting matrix may enhance its stability and disfavor its denaturation via aggregation which might occur at high temperature for example.33,34 The activation effect of bCA at 80 °C was tested by UV experiments with the time-course analysis at pH 7.4. The final concentration of DCF–PEI was 0.2 mM. As shown in Fig. 4b and c, the hydrolysis reaction of p-nitrophenyl acetate was promoted at 25 °C (black line) as compared to the reaction with bCA at 80 °C (grey line).
Interestingly, catalytic activation effects can be obtained by simple addition of bPEI800 (light blue dot) and DCF–PEI (light blue) in the absence of bCA. The addition of bPEI800 (blue dot) and DCF–PEI (blue line) components to a solution of bCA induce a 3- or 5-fold, increased enzymatic activity at 80 °C, respectively. The same activation effect was observed with the addition of DCF–PEI in an aqueous solution of bCA after 180 s reaction time at 80 °C (red line).
The particle size of bPEI800 with bCA and DCF–PEI with bCA evaluated through DLS increases to 1000–1200 nm when heated in aqueous solution at 80 °C (Fig. S16†). The same aggregation effects were observed by TEM. Heterogeneous dark and bright nanoparticles of DCF–PEI with bCA with an overall diameter of 800–1000 nm (Fig. S17†) are formed. Larger fractal aggregates were observed for bPEI800 with the bCA samples when heated at 80 °C (Fig. S18†). The multivalent hydrophilic bPEI800 and DCF–PEI cross-linked nanoparticles enable to activate the catalytic properties of the native bCA, through accelerated proton sponge effects of the external PEI groups. Moreover, at high temperature they strengthened significantly the structural stability, and effectively inhibited the formation of protein aggregate occurred to free bCA.
Footnote |
† Electronic supplementary information (ESI) available. See DOI: https://doi.org/10.1039/d1cy02290c |
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