Viktor
Tajti
and
Gábor
Czakó
*
MTA-SZTE Lendület Computational Reaction Dynamics Research Group, Interdisciplinary Excellence Centre and Department of Physical Chemistry and Materials Science, Institute of Chemistry, University of Szeged, Rerrich Béla tér 1, Szeged H-6720, Hungary. E-mail: gczako@chem.u-szeged.hu
First published on 21st March 2022
We investigate the mode-specific dynamics of the ground-state, C–Cl stretching (v10), CH2 wagging (v7), sym-CH2 stretching (v1), and sym-CH3 stretching (v3) excited F− + CH3CH2Cl(vk = 0, 1) [k = 10, 7, 1, 3] → Cl− + CH3CH2F (SN2), HF + CH3CHCl−, FH⋯Cl− + C2H4, and Cl− + HF + C2H4 (E2) reactions using a full-dimensional high-level analytical global potential energy surface and the quasi-classical trajectory method. Excitation of the C–Cl stretching, CH2 stretching, and CH2/CH3 stretching modes enhances the SN2, proton abstraction, and FH⋯Cl− and E2 channels, respectively. Anti-E2 dominates over syn-E2 (kinetic anti-E2 preference) and the thermodynamically-favored SN2 (wider reactive anti-E2 attack angle range). The direct (a) SN2, (b) proton abstraction, (c) FH⋯Cl− + C2H4, (d) syn-E2, and (e) anti-E2 channels proceed with (a) back-side/backward, (b) isotropic/forward, (c) side-on/forward, (d) front-side/forward, and (e) back-side/forward attack/scattering, respectively. The HF products are vibrationally cold, especially for proton abstraction, and their rotational excitation increases for proton abstraction, anti-E2, and syn-E2, in order. Product internal-energy and mode-specific vibrational distributions show that CH3CH2F is internally hot with significant C–F stretching and CH2 wagging excitations, whereas C2H4 is colder. One-dimensional Gaussian binning technique is proved to solve the normal mode analysis failure caused by methyl internal rotation.
All the previous mode-specific SN2 studies focused on reactions of methyl–halides. Moving to more complex reactions of X− + CH3CH2Y introduces a new reaction channel via base-induced elimination (E2) leading to Y− + HX + C2H4, besides the SN2 pathways resulting in Y− + CH3CH2X. Following a couple of pioneering electronic structure,40–43 density functional theory-based direct dynamics,44 and Car–Parrinello molecular dynamics45,46 studies focusing on the F− + CH3CH2Y [Y = F, Cl, Br, I] reactions, in 2017 we reported a high-level ab initio characterization of the PES of the F− + CH3CH2Cl system considering SN2 via Walden inversion, front-side attack, and double inversion as well as E2 and various high-energy product channels such as HF + CH3CHCl−, FH⋯Cl− + C2H4, H− + CH3CHClF/CH2FCH2Cl, and FCl− + CH3CH2.47 Utilizing the stationary-point information, we recently developed a full-dimensional coupled-cluster-based analytical PES for the multi-channel F− + CH3CH2Cl reaction, allowing efficient QCT simulations and direct comparison with crossed-beam experiments.48 Simulations played an essential role in distinguishing between the SN2 and E2 channels, because the current experiments detected the ionic products, which is the same (Cl−) for the two competing channels. We found that the E2 channel usually dominates over the thermodynamically favored SN2 reaction, due to the wider range of the reactive attack angles for the former.48
In the present work, we investigate the mode-specific dynamics of the F− + CH3CH2Cl multi-channel reaction utilizing our recently-developed analytical PES48 and the QCT method. The computations reveal the effect of initial mode-specific vibrational excitations on the reactivity and dynamics of the different reaction pathways and product channels. Besides the usual results of a standard QCT analysis, we report mode-specific polyatomic product-state distributions and utilize the energy-based Gaussian binning (1GB) technique,49–51 for the first time, for an 8-atomic molecule (CH3CH2F). The computational details and methods are described in Section II, the results are presented and discussed in Section III, and the paper ends with summary and conclusion in Section IV.
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Fig. 1 Normal modes of CH3CH2Cl excited in the present dynamics simulations. The harmonic frequencies on the PES are ω10 = 697, ω7 = 1330, ω1 = 3104, and ω3 = 3048 cm−1. |
Integral cross sections (ICSs) are calculated using a b-weighted numerical integration of the P(b) opacity functions (the P reaction probabilities as a function of b). Differential cross sections are obtained using standard histogram binning (HB). We apply different zero-point energy (ZPE) restrictions for the ICSs: (1) soft: the sum of the classical vibrational energies of the products must be larger than the sum of the harmonic ZPEs of the polyatomic products and, in the case of the proton-transfer channel and the two E2 channels, the sum of the classical internal energy of HF and the vibrational energy of the polyatomic product must be larger than sum of the anharmonic ZPE of the diatomic HF molecule corresponding to its given rotational state and the harmonic ZPE of the polyatomic product. The variationally-determined anharmonic rovibrational levels of the HF molecule are taken from ref. 54. (2) hard: the previous constraints are set separately for each product and we exclude trajectories from the reactive ones if any condition does not hold. We apply no ZPE-constraints to differential cross sections.
We distinguish between the retained or inverted configuration of the polyatomic product for the SN2 channel by using a vector-projection scheme, which was introduced in ref. 55. First we define a Cartesian coordinate system with the alpha-carbon (CH2–carbon) atom at the origin and calculate the cross product of the position vectors of the beta-carbon (CH3–carbon) atom and the halogen atom. Then, we evaluate the dot product of the obtained normal vector and the difference of the position vectors of the two hydrogen atoms bound to alpha carbon. Dot-product values are determined in the case of the initial (CH3CH2Cl) and final (CH3CH2F) geometries of the reactive SN2 trajectories, and we compare the signs of the dot products: the same and opposite signs refer to retention and inversion, respectively.
To distinguish between the front-side-attack (FS SN2) and double-inversion56 (DI SN2) pathways, we scan the trajectories in a backward direction until we reach a transition state (TS) defined by the C–Cl distance becoming less than 4.0 bohr (2.1 Å) as the C–Cl distances at the front-side attack and Walden-inversion TSs are 2.362 and 2.197 Å on the PES, respectively. At this TS geometry, we separate the front-side attack TS from the Walden-inversion TS (second TS of the DI SN2 pathway) by applying a limit of 111° (based on ref. 55 and 57) to the F–C–Cl attack angle (γ). Thus, γ less than 111° is a sign of front-side attack, whereas γ greater than 111° refers to the double-inversion mechanism.
In case of the two types of E2 trajectories, syn and anti, we find the TS region at 3.8 bohr C–Cl distance following the E2 trajectories backwards similarly to the above-described retention case. At the TS geometry we calculate the cosine of the Cl–Cα–Cβ–F dihedral angle and if its value is positive (negative), then the trajectory is assigned to the syn- (anti-) pathway. We note that the present reaction channel and pathway assignment is not exactly the same as the one used in ref. 48, which results in somewhat different numerical results, especially for the minor FH⋯Cl− complex forming and syn-E2 channels, but this does not affect any conclusions.
We determine the mode-specific vibrational energies of the polyatomic products based on the procedure described in detail in ref. 51. First, we perform normal-mode analysis for the optimized products to obtain their harmonic vibrational frequencies (ωk) and normal-mode eigenvectors. Then, we remove the angular momentum of the products by modifying velocities. In the next step, we use an Eckart-transformation,51,58 also taking H-atom permutations into account, to find the best overlap59 between the optimized/reference and the actual/final structure. Then, we transform the mass-scaled Cartesian displacement coordinates and velocities by using the eigenvectors obtained in the first step to determine the normal coordinates (Qk) and momenta (Pk). Finally, we determine the mode-specific harmonic vibrational energies (Ek) and the integer vibrational quantum numbers (nk), in atomic units, as
![]() | (1) |
![]() | (2) |
Vibrational distributions are obtained by histogram binning and in the case of the CH3CH2F products one-dimensional Gaussian binning (1GB)49–51 is also employed. For 1GB we use the GB(harm-exact) approach, as proposed in ref. 51, which defines a Gaussian weight for each product as
![]() | (3) |
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Fig. 2 Schematic potential energy surface of the F− + CH3CH2Cl reaction showing the classical relative energies (in kcal mol−1) of the stationary points along the different reactions pathways corresponding to the fitted PES48 and (benchmark CCSD(T)-F12b/aug-cc-pVQZ + Δcore[CCSD(T)-F12b/cc-pCVTZ-F12] level of theory).47,60 |
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Fig. 4 Distributions of the Cl–Cα–Cβ–F dihedral angles at the E2 transition states for the F− + CH3CH2Cl(vk = 0, 1) → Cl− + HF + C2H4 [k = 10, 7, 1, 3] reactions at different collision energies. |
The reactivity of proton abstraction increases with increasing collision energy and for this channel significant mode specificity is seen. Reactant vibrational excitation enhances the reactivity, and the most substantial effect is found for the CH2 stretching, as expected, because the proton is abstracted from the CH2 group. ZPE constraints significantly reduce the abstraction reactivity and shifts the threshold energy toward larger values, in agreement with the endothermicity. These results clearly show that most of the proton-abstraction products violate ZPE, and with hard constraint only the CH2 stretching excited reaction provides considerable reactivity at high collision energy.
The cross sections for the FH⋯Cl− + C2H4 and syn-E2 channels show similar dependence on collision energy and initial vibrational excitation as expected, because both pathways go through the same Syn-E2 TS. In both cases the reactivity decreases with increasing collision energy and CH2 and CH3 stretching excitations enhance the reaction the most efficiently. On one hand, this effect of the CH3 stretching mode is expected, because in both cases a proton is abstracted from the beta carbon atom. On the other hand, the enhancement upon CH2 stretching excitation is due to IVR between these modes. Considering the magnitude of the CH2/CH3 vibrational enhancement factors, we find more substantial enhancement by a factor of 2–4, especially with ZPE constraints, for the syn-E2 channel, than in the case of the FH⋯Cl− channel. This may be explained by the fact that vibrational excitation facilitates the dissociation of the FH⋯Cl− complex, thereby enhancing the syn-E2 channel. ZPE constraints reduce the reactivity for the syn-E2 channel, nevertheless, the shapes of the excitations functions are not significantly affected. For the highly-exothermic FH⋯Cl− channel, ZPE violation is negligible.
The anti-E2 channel dominates the title reaction, this pathway is strongly favored over syn-E2, as expected since the Anti-E2 TS is well below the Syn-E2 TS and the Anti-E2 postmin is less deep than the Syn-E2 postmin (see Fig. 2). Furthermore, the anti-E2 reactivity is even larger than that of the SN2 channel, especially at low collision energies and usually expect in the hard constrained case. This finding is somewhat unexpected, because the SN2 reaction is thermodynamically preferred and kinetic control also does not explain this substantial reactivity difference, because the Anti-E2 and W TSs are nearly isoenergetic. The reason must be in the different dynamics of the two channels,48 which will be revealed and discussed later. Similar to the syn-E2 channel, CH2/CH3 stretching excitations enhance the anti-E2 channel the most efficiently, especially when ZPE constraints are applied and ZPE constraints decrease the reactivity. The constraints, especially the hard one, have more substantial effects on the less exothermic E2 channel than in the case of the SN2 reaction where ZPE violation is negligible, this is why the E2/SN2 reactivity ratio changes when hard constraint is applied. Furthermore, we note that ZPE constraints may artificially enhance the mode-specific effects on the E2 channel as less product ZPE violation is expected if the reactant is vibrationally excited.
Cross sections (Fig. S1, ESI†) and reaction probabilities (Fig. S2, ESI†) for the front-side attack, double-inversion, and induced-inversion pathways are shown in the ESI.† Retention and induced-inversion reactivity is small, around 0.1% as Fig. S2 (ESI†) shows, and we only find retention trajectories for the initially excited reactions. Front-side attack opens above 30 kcal mol−1 as expected based on its barrier height (29.4 kcal mol−1). Double inversion dominates at lower collision energies (20–40 kcal mol−1) and it is the most efficiently enhanced by CH2 stretching excitation, because the first inversion begins with a proton abstraction from the alpha carbon atom. We also find induced-inversion trajectories in similar collision energy range and with similar reactivity as double inversion, though for induced inversion one reactant ground-state trajectory is also found at collision energy of 19.1 kcal mol−1. In the case of the retention and induced-inversion pathways the CH3CH2F and the inverted-CH3CH2Cl molecules are formed internally hot; thus, the soft and hard constraints do not affect the cross sections as seen in Fig. S1 (ESI†), in accord with our previous findings for the F− + CH3Br reaction.57 Furthermore, we note that for the F− + methyl–halide systems the retention and induced-inversion reactivity is significantly larger than in the present case,55,57 indicating that the CH3 ligand hinders these channels.
The proton-abstraction channel of the ground-state reaction has small reactivity, usually below 1% even at the highest collision energy considered in the present study. Upon vibrational excitation of the reactant, especially for the CH2 stretching, the reaction probabilities as well as the bmax values significantly increase as seen in Fig. 6. The scattering angle distributions show forward scattered dominance indicating significant stripping mechanism. The attack angle distributions are somewhat isotropic with large statistical uncertainty due to the small reactivity, which hinders any conclusion about the mode-specific effects on the abstraction mechanism.
On one hand, the decaying opacity functions and the nearly isotropic angle distributions of the FH⋯Cl− + C2H4 and syn-E2 channels are similar at the lowest collision energy, indicating indirect pathways in both cases. On the other hand, as the collision energy increases and the reactions become more direct, interesting differences emerge between the two channels, which are the most pronounced at the highest collision energy. While both channels are mainly forward scattered, the bmax values become much smaller for the FH⋯Cl− formation. Considering the attack angle distributions, the side-on collisions (relative to the C–Cl bond) favor the FH⋯Cl− formation, whereas clear front-side attack preference is seen for the syn-E2 channel. These findings show the different direct pathways of the two channels. In the case of syn-E2, F− comes parallel with the C–Cl bond from the Cl-side, abstracts the proton, and Cl− leaves forward while HF moves into somewhat opposite direction, without the possibility of FH⋯Cl− complex formation. FH⋯Cl− formation can occur when F− approaches from the CH3 group perpendicular to the C-Cl bond, abstracts the proton, and the HF fragment moves toward the leaving Cl− and the forming FH⋯Cl− complex scatters forward considering the path of the Cl ligand.
In the case of the anti-E2 channel the bmax values are larger than those of syn-E2 and SN2, especially at higher collision energies in the latter case. At high collision energies the opacity functions show a small peak at large impact parameters as a signature of direct striping mechanism. At the lowest collision energy, the anti-E2 scattering angle distributions are backward–forward symmetric indicating indirect dynamics, and as the collision energy increases and the reaction becomes more direct, the forward scattering dominates. This finding indicates that F− usually strips the proton from the CH3 group while the leaving Cl− moves forward without significantly changing its direction. The anti-E2 attack angle distributions nearly mirror the corresponding syn-E2 ones, i.e., back-side attack favors the anti-E2 pathway, especially at higher collision energies, as expected looking at the structure of the Anti-E2 TS. At this point we can explain the larger reactivity of the E2 pathway compared to SN2. As seen in Fig. 6, the opacity functions of the anti-E2 pathway show higher preference of large impact parameters than the SN2 channel, and at higher collision energies, the reactive attack angle range is much wider for the E2 pathways than in the case of SN2 as seen in Fig. 8. For the FH⋯Cl− and E2 channels one can see the initial vibrational excitation effects on the reaction probabilities; however, the changes in the shapes of the opacity functions and angle distributions are not significant at the given level of statistics.
As Fig. 9 also shows, the proton-abstraction channel forms cold HF molecules; their internal energy distributions peak at the lowest energies showing significant ZPE violation, especially at low collision energies. The CH3CHCl− co-product is more excited, but significant ZPE violation is also seen. Here mode-specific effects cannot be assessed due to the low statistical accuracy of this minor channel.
The FH⋯Cl− complex and the C2H4 co-product have Gaussian-like, rather hot internal energy distributions with negligible ZPE violation. The FH⋯Cl− distributions peak around the De value (23.1 kcal mol−1) of the complex, thus, significant fraction of the products has larger internal energy than the dissociation energy; thus, this complex exists in a Feshbach-type resonance61 state. The initial vibrational energy transfers rather into the C2H4 fragment as the blue-shifted distributions show in Fig. 9. We may also assume that in the case of significant vibrational energy transfer into the FH⋯Cl− fragment, the complex dissociates and E2 products are formed.
The internal energy distributions for the syn- and anti-E2 products are shown in Fig. 10. Significant differences between the product distributions obtained for the two pathways are not found. In both cases the HF molecules are internally cold, their internal energy distributions peak at zero energy showing substantial ZPE violation, in accord with the ZPE-constrained cross sections shown in Fig. 5. Note that the HF molecules formed by the proton-abstraction channel are even more colder, as expected, because proton abstraction is an endothermic, whereas E2 is an exothermic process. The C2H4 E2 co-products are internally hot with only little ZPE violation, except for the ground-state reaction at low collision energies. As collision energy increases a tail emerges in the C2H4 distributions at higher internal energies, which is the best seen for the anti-E2 channel. Initial vibrational energy mainly transfers into the C2H4 product, though some shifts toward higher energies are also seen for HF as well.
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Fig. 11 Normalized HF vibrational distributions for the F− + CH3CH2Cl(vk = 0, 1) [k = 10, 7, 1, 3] → HF + CH3CHCl−, syn-E2, and anti-E2 reactions at different collision energies. |
The HF rotational distributions for the above-discussed channels are shown in Fig. 12. The HF molecules formed by proton abstraction are rotationally cold; the rotational distributions usually peak at J = 1–2. Some initial translational and vibrational energy transfer into HF rotation are seen, but this finding is not significant at the given level of statistics. The HF products of the E2 channel are rotationally hotter, and unlike for the vibrational distributions, here significant syn/anti mechanism dependence is found, i.e., the syn-E2 HF products are rotationally more excited than the anti-E2 ones. Collision energy transfer into HF product rotation is seen, whereas the vibrational energy transfer is not significant.
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Fig. 12 Normalized HF rotational distributions for the F− + CH3CH2Cl(vk = 0, 1) [k = 10, 7, 1, 3] → HF + CH3CHCl−, syn-E2, and anti-E2 reactions at different collision energies. |
According to the 1GB results shown in Fig. 13 and 14, the CH2 and CH3 stretching modes are mainly in vibrational ground state (80–90%) and 10–20% one-quantum excitations are seen. Upon CH2/CH3 initial stretching excitations the corresponding product modes are not found significantly more excited, as a signature of strong IVR. For the CF stretching and CH2 wagging modes significantly more excitations are obtained up to about 4 quanta (Fig. 14), as expected, because these modes couple with the reaction coordinate the most efficiently. We also see some translational and vibrational energy transfer into these modes, in accord with the internal energy distributions. Unlike for the symmetric CH3 stretching, for the CF and CH2 stretching as well as CH2 wagging modes HB provides similar vibrational distributions with only slightly higher excitations and better statistics as 1GB, as shown in Fig. S4 (ESI†).
For the C2H4 products, where internal rotation is not a concern, we apply HB and give the mode-specific vibrational distributions in Fig. S5–S7 (see ESI†) for the FH⋯Cl− + C2H4, syn-E2, and anti-E2 channels, respectively. Here we consider different CH2 wagging and stretching modes and the results and conclusions are similar to the above-discussed findings for the CH3CH2F product of the SN2 channel.
(a) The analytical PES usually reproduces the all-electron CCSD(T)/complete-basis-set-quality benchmark47,60 stationary-point relative energies within a few tenths of a kcal mol−1.
(b) IVR prior to collision is significant, nevertheless, some mode specificity is maintained.
(c) Normal mode analysis for the symmetric CH3 stretching mode of the CH3CH2Cl and CH3CH2F molecules fails due to the internal rotation of the methyl group, which issue can be treated by using the 1GB method49–51 for mode-specific polyatomic product vibrational analysis.
(d) The syn- and anti-E2 pathways can be almost unambiguously separated numerically based on the Cl–Cα–Cβ–F dihedral angles at the E2 transition states.
(e) C-Cl stretching excitation enhances the SN2 channel, proton abstraction occurs from the alpha carbon and enhanced by CH2 stretching excitation, and the FH⋯Cl− + C2H4 and E2 channels proceed with beta proton transfer and are enhanced by both CH2 and CH3 stretching excitations due to IVR.
(f) Anti-E2 is kinetically preferred and thus dominates over syn-E2. Furthermore, anti-E2 has even higher reactivity than the thermodynamically favored SN2, due to the wider reactive attack angle range for the former as also proposed in ref. 48.
(g) Double-inversion and front-side attack SN2 pathways and induced inversion of the reactant are minor with only about 0.1% probability for the title reaction.
(h) As collision energy increases and the reactions become direct, scattering angle distributions show backward dominance for SN2 and forward preference for FH⋯Cl− complex formation and E2. For the proton-abstraction channel forward scattering is found indicating significant direct stripping mechanism.
(i) Attack angle distributions show that the direct SN2, FH⋯Cl− complex-forming, syn-E2, and anti-E2 channels favor initial back-side, side-on, front-side, and back-side attack, respectively.
(j) The SN2 channel produce internally hot CH3CH2F molecules, where mainly the CF stretching and CH2 wagging modes are excited. Initial CH2/CH3 stretching excitation energy transfers into the internal energy of the CH3CH2F SN2 and C2H4 E2 products.
(k) A significant fraction of the FH⋯Cl− complexes are in a Feshbach-type resonance state with higher internal energies than the dissociation energy of the complex.
(l) HF products are vibrationally and rotationally cold, especially for the proton abstraction channel. The HF products have significantly higher rotational excitations via the syn-E2 channel than anti-E2.
(m) Standard histogram binning provides significant populations for energetically forbidden CH3 stretching vibrational states of CH3CH2F, whereas the 1GB method assigns nearly zero weights for these unphysical states and gives realistic cold distributions. Histogram binning performs well for mode-specific vibrational analysis of C2H4, which is not affected by internal rotations.
The present study and the above results show the current state-of-the-art of polyatomic reaction dynamics for a 9-atomic system. We hope that the techniques used in this study may be utilized in future similar theoretical investigations. The timescale of IVR may hinder mode-specific experimental studies for the title reaction; nevertheless, we hope that the present findings may motivate future measurements of vibrational effects on the dynamics of ion–molecule reactions.
Footnote |
† Electronic supplementary information (ESI) available: Cross sections and reaction probabilities for double inversion, front-side attack, and induced inversion; Gaussian width test for 1GB; and mode-specific vibrational distributions for the CH3CH2F and C2H4 products obtained with histogram binning. See DOI: 10.1039/d2cp00685e |
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