Yunping Zhoujina,
Mingtao Zhangb,
Sean Parkin
c,
Tonglei Li
d,
Faquan Yu
*a and
Sihui Long
*a
aKey Laboratory for Green Chemical Process of Ministry of Education, Hubei Key Laboratory of Novel Reactor and Green Chemical Technology, Hubei Engineering Research Center for Advanced Fine Chemicals, School of Chemical Engineering and Pharmacy, Wuhan Institute of Technology, 206 1st Rd Optics Valley, East Lake New Technology Development District, Wuhan, Hubei 430205, China. E-mail: fyuwucn@gmail.com; longsihui@yahoo.com; Sihuilong@wit.edu.cn; Tel: +86 27 87194980
bComputational Center for Molecular Science, College of Chemistry, Nankai University, Tianjin, China
cDepartment of Chemistry, University of Kentucky, Lexington, Kentucky 40506, USA
dDepartment of Industrial and Physical Pharmacy, Purdue University, West Lafayette, Indiana 47907, USA
First published on 16th July 2021
A new solvate of clonixin (CLX), a dimethylacetamide (DMA) solvate, has been obtained by crystal growth in DMA. The new form was characterized by NMR, single-crystal X-ray diffraction, and PXRD. The crystal structure is stabilized by a strong hydrogen bond between the carboxylic acid OH of CLX and the DMA carbonyl, the strength of which is on par with those of the four solvent-free forms of CLX and the DMF solvate. These previously known forms are based on either the acid–acid homosynthon or the acid–pyridine heterosynthon, depending on the dihedral angle between the two aromatic rings of CLX, or the heterodimer between CLX and DMF. The new solvate loses DMA to convert into form I of CLX, as confirmed by differential scanning calorimetry (DSC) and powder X-ray diffraction (PXRD), similar to how the DMF solvate does. A comparison of the two solvates was carried out and theoretical studies were performed to shed light on the conformational difference between the two CLX molecules in the two solvates and the packing differences between them. The insight gained on this solvatomorphic system could aid the design of new solvates and cocrystals of CLX.
Solvates, regarded as one type of cocrystal by some practitioners,13 have been widely studied and have well established applications.14,15 Although solvates may have a tendency to lose their solvent content and some organic solvents present in solvatomorphs of a therapeutically indicated drug substance might increase toxicity risk, Byrn16 has provided rational reasons for their continued study. The solvatomorph could be the penultimate solid form of the drug substance, having been specifically chosen for recovery or purification.17,18 A solvate could induce a preferable morphology compared with its solvent-free counterpart.19 High quality crystals suitable for single-crystal structure determination of the drug substance might only be obtainable as solvates. The desolvated form of a solvate could facilitate its dissolution.20,21 From a business perspective, solvates can be considered as new patentable entities.22,23 For example, Trametinib (Mekinist, a trimetinib tablet) is a MEK inhibitor developed by GlaxoSmithKline (GSK). The formulation is a DMSO solvate and was approved by the US FDA on May 29, 2013. This drug can be used to treat unresectable or metastatic melanoma with BRAF (murine sarcoma virulence tumor-causing homolog B1 gene) V600E or V600K mutation.15
Clonixin [2-(2-methyl-3-chloroanilino)nicotinic acid, a. k. a. CLX] (Scheme 1), is a classic non-steroidal anti-inflammatory drug (NSAID) with important applications ranging from anti-inflammatory and analgesic24,25 to platelet-inhibition26,27 and acute migraine relief.28,29 Due to its pharmaceutical stability and bioavailability issues, currently microemulsions30 and clonixin lysinate are used in clinical formulations.31
Due to both conformational flexibility and the presence of multiple functional groups, i.e. carboxylic acid and pyridine, CLX is known to exist in at least four solvent-free forms, demonstrating both synthon polymorphism, conformational polymorphism, and tautomeric polymorphism.32
The carboxylic acid and pyridine functional groups on CLX are good hydrogen bond formers. We envisioned it could form hydrogen bonds with other compounds, forming solvates or cocrystals depending on the state (liquid or solid) of the coformer (s) involved. Solvates and cocrystals of pharmaceuticals have been proven to be promising alternative formulation approaches.9,15,33,34
The vision of forming multicomponent crystals of CLX was first realized by the harvest of a DMF solvate of CLX, i.e. CLX·DMF (designated S1).35 In the solvate, a hydrogen bond is formed between the carboxylic OH of CLX and the carbonyl O of DMF, and the two common synthons, i.e. acid–acid homosynthon and acid–pyridine heterosynthon, are not observed. The strength of the new hydrogen bond was found to be on par with that of the acid–acid dimer and the acid–pyridine catemer. Meanwhile, two cocrystals of CLX have also been synthesized with L-proline and piroxicam as coformers.36,37
This phenomenon intrigued us: could this hydrogen bond be robust enough to lead to other solvates with DMF analogs such as dimethylacetamide (DMA), formamide, acetamide, propionamide, butyramide, etc., as they can also provide a hydrogen bond acceptor by virtue of the amide carbonyl? To investigate, we set out to study the crystal growth of CLX in a series of solvents analogous to DMF.
Here we report the discovery and characterization of a new solvate of CLX, a DMA solvate, and the comparison of the two CLX solvates. The new form was fully characterized by NMR, single-crystal X-ray diffraction, and PXRD, and its phase behavior was investigated by DSC and TGA. Moreover, we also performed theoretical calculations to provide an explanation for the rise of the solvatomorphic system. The insight gained from the experimental and theoretical investigation should provide information pertinent to the design of more solvates and cocrystals of CLX.
Crystallographic data for CLX·DMA were collected at 293(2) K on a Rigaku Oxford diffractometer using a CuKα radiation (λ = 1.54184 Å). Cell refinement and data reduction were done using CrysAlisPro. Structure solution and refinement were carried out using the SHELXS and SHELXL programs, respectively.
PXRD data for the solvate and desolvated sample were collected on a Rigaku X-ray diffractometer with CuKα radiation (40 kV, 15 mA, λ = 1.5406 Å) between 5.0–50.0° (2θ) at ambient temperatures.
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Fig. 1 Crystals and structure of two CLX solvates.35 Scale bar 0.2 mm. |
S1 | S2 | |
---|---|---|
Formula | C16H18ClN3O3 | C17H20ClN3O3 |
Formula weight | 335.78 | 349.81 |
Crystal size (mm) | 0.30 × 0.20 × 0.10 | 1.00 × 0.20 × 0.10 |
Crystal system | Triclinic | Monoclinic |
Space group | P![]() |
P21/c |
a/Å | 8.4310(2) | 15.4376(4) |
b/Å | 9.1450(2) | 5.92226(13) |
c/Å | 11.1420(2) | 19.0732(6) |
α/° | 103.6360(8) | 90 |
β/° | 93.1390(8) | 100.548(3) |
γ/° | 107.8450(9) | 90 |
Z, Z′ | 2, 1 | 4, 1 |
V/Å3 | 787.16(3) | 1714.31(8) |
Dcal/g cm−3 | 1.417 | 1.355 |
T/K | 90.0(2) | 293(2) |
Abs coeff. (mm−1) | 0.262 | 2.150 |
F(000) | 352 | 736 |
Range (deg) | 1.90–27.49 | 4.717–66.856 |
Limiting indices | −10 ≤ h ≤ 10 | −18 ≤ h ≤ 17 |
−11 ≤ k ≤ 11 | −6 ≤ k ≤ 7 | |
−14 ≤ l ≤ 14 | −22 ≤ l ≤ 21 | |
Completeness to 2θ | 99.9% | 99.5% |
Unique reflections | 2845 | 9510 |
R1[I > 2σ(I)] | 0.0402 | 0.0405 |
wR2 (all data) | 0.1039 | 0.1155 |
CCDC refcode/accession code | FITBIW | 2079841 |
Although the flat molecule of CLX prefers to form an acid–acid homodimer in its solvent free forms, due to the presence of DMA, neither the acid–acid homosynthon nor the acid–pyridine heterosynthon is observed in the new solvated crystal structure. Instead, the hydrogen bond is between the carboxylic OH of CLX and the carbonyl O of DMA (Fig. 3), similar to that of CLX·DMF. This hydrogen bond should be stronger than or at least on par with the other two types considering the shorter bond distance of 1.74 Å and the near linear alignment of the three atoms (173.73° for bond angle), which is close to those of CLX·DMF. The intramolecular hydrogen bond has parameters of 1.910 Å and 145.37°. Similar to DMF, DMA provides a strong hydrogen-bond acceptor for interaction with CLX.
Fig. 6 shows the PXRD pattern of the solvate collected at room temperature, along with PXRD patterns calculated from the single-crystal structure determined at 293 K, as well as the PXRD patterns of CLX·DMA after desolvation and form I of CLX, which confirm the phase transition from the solvate to form I of CLX after thermal treatment. As can be seen, when the solvate was heated to 90 °C and kept at that temperature for two hours, the resulting colorless sample showed a PXRD pattern matching that of form I (Fig. 6).
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Fig. 6 Experimental PXRD patterns of CLX·DMA before and after desolvation and form I of CLX and calculated PXRD patterns of CLX·DMA and form I of CLX. |
In CLX·DMF, CLX takes on a twisted conformation, and it forms a heterodimer with DMF. The dimer could be viewed as being sustained by a strong O–H⋯O hydrogen bond with parameters of 1.771 Å and 178.22° and a weak sp2C–H⋯O hydrogen bond with parameters of 2.274 Å and 136.25° (Fig. 7a). In addition, π–π interaction between the pyridine ring and another DMF molecule underneath it is observed (Fig. 8b).
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Fig. 7 (a) The heterodimer based on R22(7) hydrogen bond motif of S1; (b) the heterodimer based on D2 motif of S2; (c) the hypothetical heterodimer based on R22(8) motif of S2. |
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Fig. 8 (a) The π–π interaction between CLX and DMF in S1; and (b) the bonds involved in the π–π interaction; (c) the π–π stacking of CLX in S2. |
In DMA, as aforementioned, the CLX molecule is in a planar conformation, and it also forms a dimer with DMA (Fig. 7b). Yet, the dimer is based only on the carboxylic O–H⋯OC hydrogen bond, as the H covalently bonded to sp2C in DMF is replaced with sp3CH3, and no π–π interaction between CLX and DMA is observed. Why would not CLX·DMA pack in a similar fashion to CLX·DMF?
First we wanted to see if conformational variation of the two CLX molecules in the two solvates would lead to a significant difference in conformational energy. It turned out that the twisted and planar conformations have similar conformational energies as suggested by calculations based on different levels of theory, as either ΔE or ΔG is less than 1 kcal mol−1. Thus, conformational energy is not an issue in the molecular packing. Then, what if the planar CLX in S2 forms a hypothetical dimer (Fig. 7c) with DMA in a similar fashion as that of CLX and DMF? The hydrogen bonding energy of the hypothetical dimer of CLX and DMA is calculated to be −11.0 kcal mol−1, which is comparable to that of CLX and DMF dimer (−11.1 kcal mol−1). But if CLX·DMA packs similarly to CLX·DMF, the distance between the carbonyl C of CLX and that of DMA would increase from 3.686 Å to 4.256 Å, due to the size of CH3 in contrast to H, which would cause a close contact between the methyl (C4 in Fig. 8b) on N and the benzene ring (C3 in Fig. 8b). If the same antiparallel π–π interaction in CLX·DMF existed between CLX and DMA, the significant steric hindrance between C4 and C3 would induce a dihedral rotation (C1–N1–C2–C3 in Fig. 8b) which would result in the transformation of CLX from a twisted conformation to planar. In the new dimer in CLX·DMA, the hydrogen bond has strength of −10.4 kcal mol−1, which rivals that of both CLX–DMF dimer and the hypothetical one. Furthermore, the new planar CLX·DMA synthon induces a new packing mode (as shown in Fig. 8c), and either the pyridine ring or the benzene ring can stack with its neighboring synthons, with a stabilization energy of −14.8 kcal mol−1 (−7.4 kcal mol−1 for each side), which is on par with the π–π stacking between CLX and DMF (−14.4 kcal mol−1) in CLX·DMF. Thus, the new packing mode in CLX·DMA is likely optimal and as stable as that of CLX·DMF.
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Fig. 10 2D fingerprint plots (left) for CLX in CLX·DMA and relative contributions to the Hirshfeld surface (right) by the various intermolecular contacts in the crystal. |
Footnote |
† Electronic supplementary information (ESI) available: Crystal growth results in a series of DMF analogs, the 1H NMR spectrum of CLX·DMA, and crystal structure of the CLX·DMA in the form of crystallographic information file (CIF) are provided. CCDC 2079841. For ESI and crystallographic data in CIF or other electronic format see DOI: 10.1039/d1ra03623h |
This journal is © The Royal Society of Chemistry 2021 |