Open Access Article
Sara H.
Mejias‡
abc,
Elena
López-Martínez‡
c,
Maxence
Fernandez
c,
Pierre
Couleaud
ab,
Ana
Martin-Lasanta
ad,
David
Romera
ab,
Ana
Sanchez-Iglesias
c,
Santiago
Casado
a,
Manuel R.
Osorio
a,
Jose M.
Abad
ae,
M. Teresa
González
*a and
Aitziber L.
Cortajarena
*abcf
aIMDEA Nanociencia, Campus Universitario de Cantoblanco, C\Faraday, 9, 28049 Madrid, Spain. E-mail: teresa.gonzalez@imdea.org
bNanobiotechnology Unit (iMdea Nanociencia) associated with Centro Nacional de Biotecnología (CNB-CSIC), Campus Universitario de Cantoblanco, Madrid 28049, Spain
cCenter for Cooperative Research in Biomaterials (CIC biomaGUNE), Basque Research and Technology Alliance (BRTA), Paseo de Miramón 182, 20014, Donostia San Sebastián, Spain. E-mail: alcortajarena@cicbiomagune.es
dDepartamento de Química Orgánica, Universidad de Granada, Campus Fuentenueva s/n, E-18071 Granada, Spain
eDepartamento de Química Analítica y Análisis Instrumental, Facultad de Ciencias, Universidad Autónoma de Madrid, 28049 Madrid, Spain
fIkerbasque, Basque Foundation for Science, Mª Díaz de Haro 3, 48013 Bilbao, Spain
First published on 1st April 2021
Protein-based materials are usually considered as insulators, although conductivity has been recently shown in proteins. This fact opens the door to develop new biocompatible conductive materials. While there are emerging efforts in this area, there is an open challenge related to the limited conductivity of protein-based systems. This work shows a novel approach to tune the charge transport properties of protein-based materials by using electron-dense AuNPs. Two strategies are combined in a unique way to generate the conductive solid films: (1) the controlled self-assembly of a protein building block; (2) the templating of AuNPs by the engineered building block. This bottom-up approach allows controlling the structure of the films and the distribution of the AuNPs within, leading to enhanced conductivity. This work illustrates a promising strategy for the development of effective hybrid protein-based bioelectrical materials.
Moreover, protein-based functional hybrid structures are generated with the specific arrangement of active elements along the protein backbone.11–16 Recently, proteins have been proposed as candidates for the interfacing of biomolecules with electronic devices due to their intrinsic molecular conduction.17–19 Long-range electronic conductivity in protein-based materials arises from two mechanisms: (1) redox mediated via hopping electron transfer across redox centers, which are spaced closely enough for coherent overlap to occur,17,20,21 or (2) nonredox-mediated conduction with a band gap, that depends on the protein amino acid composition and the secondary structure of the protein scaffolds.17,22–25 Protonic conductivity occurs when protons are transported along the protein scaffold by charged amino acids, such as aspartic and glutamic acids.26–28 In addition, special charge transport occurs between redox active amino acids, such as tyrosine or tryptophan, where the charge transport happens by proton-coupled electron transfer simultaneously showing electronic- and protonic transport.23,29 These different types of transport can interplay depending on the composition of the material.30 The control of the charge transport mechanism in protein-based materials would allow tuning their conductive properties, necessary to generate bio-based conductive materials and devices. Several strategies have been reported to boost electronic or protonic charge transport in protein-based systems. For example, protonic charge transport in reflectin protein films has been tuned by varying the composition of the charge amino acids.26 The electronic transport has been favored by the introduction of redox active amino acids, such as tryptophan or tyrosine, or redox active compounds, such as naphthalene diimide (NDI) along the protein scaffold.14,31–35 Despite the increasing knowledge on transport mechanisms, charge transport through long distances is difficult to control and tune as it depends on the structure of the material and its chemical composition.17,18,30,36
The current work describes a novel approach that combines protein design, biomolecular templating of gold nanoparticles (AuNPs), and protein self-assembly to enhance the conductive properties of protein-based films (Fig. 1). The consensus tetratricopeptide repeat protein (CTPR) used as protein scaffold is made of a 34 amino acid helix-turn-helix module.37,38 The fold of CTPRs is defined by a few conserved residues; hence, there is a lot of room for engineering non-conserved amino acids.37 The modules generally appear in tandem repeats, from 2 to 20, generating a rigid right-handed superhelical structure.37 CTPRs assemble forming a transparent ordered solid film through their intrinsic self-assembly properties of the structured units.37,39 As previously demonstrated, these self-assembly capabilities enable the fabrication of photoconductive and electroactive functional assemblies based on CTPRs.11,40 CTPR protein-based films have shown protonic transport due to their ionic nature and high content of charged amino acids, and as such have been proven to be interesting actuators that respond to humidity in the environment.41 In parallel works, the incorporation of AuNPs for electrical interfacing of redox enzymes, or the AuNP-assisted assembly of heme protein resulted in effective improvement of the long-range charge transfer efficiency.42–44 AuNPs have been also used to generate AuNPs-peptide conductive nanocomposites.45 The aforementioned works show the value of design strategies to improve conductivity in protein-based systems, and inspired the use of AuNPs as electron conductive elements in a CTPR-based macroscopic hybrid films.
Herein, a CTPR unit was first designed to template AuNPs with nanometer precision through an orthogonal conjugation strategy. Then, protein self-assembly after solvent evaporation guided the formation of both solid films of CTPRs and CTPR-AuNPs.39 Remarkably, the CTPR films already displayed conductivity in the hundred nS/m range, recordable at micrometer length scales and mainly attributed to protonic charge transport. The CTPR-AuNPs hybrid films showed an enhancement of four orders of magnitude in conductivity when compared to the CTPR-only films, and, presumably, different charge transport properties. The current results demonstrate a strategy to fabricate protein-based conductive films with enhanced conductivity by using highly conductive nano-elements, which paves the way for future application of hybrid protein-based systems in the field of bioelectronics.
:
AuNPs = 5
:
1). The AuNPs concentration was calculated from their absorption at 510 nm using the following equation: ln ε = 3.32111 × ln D + 10.80505, where ε is the molar extinction coefficient (M−1 cm−1) and D is the nanoparticle core diameter in nm of the gold nanoparticles measured by TEM, according to Liu et al.50 Protein cysteines were reduced using 5 mM dithiothreitol (DTT) for 45 minutes and purified using an Illustra NAP-5 desalting column equilibrated with a solution of 150 mM NaCl, 50 mM phosphate buffer pH 8.0. Before conjugation, the excess Sulfo-SMCC was removed from the AuNPs suspension by using an ultrafiltration unit Amicon® Ultra – 0.5 mL with a 3000 Da molecular weight cutoff (MWCO) at 21
000 g for 5 min and by washing 5 times with 150 mM NaCl, 50 mM phosphate buffer pH 8.0. Purified AuNPs-SMCC were then incubated with 7.6 μL of 5.9 μM freshly reduced CTPR164Cys at room temperature with 20 rpm spinning for 1 h (final molar ratio CTPR164Cys:AuNPs = 1
:
4). After nanoparticle conjugation, the reaction was blocked by the addition of 5 μL of 10 mM β-mercaptoethanol. After overnight incubation, CTPR164Cys-AuNPs conjugates were purified from the excess of unbound AuNPs and linker using protein His-Tag and Ni-NTA column. Free AuNPs were eluted in the flow-through while CTPR164Cys-AuNPs conjugate was eluted from the nickel column with a 300 mM imidazole buffer solution.
:
4 developer:water) to remove the resin parts exposed to the laser. To ensure that all the resin is removed, the wafer was further exposed to plasma (50 W) for 30 s. The revealed sample was introduced in a thermal evaporator (Nanosphere, de Oxford Vaccum Science model) where a chromium 5–10 nm thick layer was first evaporated to increase the adhesion to the substrate, followed by a 50 nm thick gold layer. To finish, a lift-off process was performed, introducing the sample in acetone to remove all the resin in the sample and obtain the desired pattern shown in Fig. S1.†
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| Fig. 2 (A) Ribbon representation of the CTPR164Cys-AuNPs conjugated protein. Structural model is based on the structure of PDB ID: 2HYZ. The mutated cysteine residues are highlighted in blue. (B) CD spectra of CTPR164Cys (red line) compared with the original CTPR16 (black line). (C) Schematic representation of the conjugation strategy followed. The free amines from the PEGylated AuNPs and the thiol groups from the cysteines (shown in blue) of the CTPR164Cys protein are linked using sulfo-SMCC molecules. (D) Size exclusion chromatograms of AuNPs (blue dotted line), the CTPR164cys protein (black dotted line) and the CTPR164cys-AuNPs conjugates (red line). (E) UV-Visible spectra of the AuNPs with their characteristic LSPR peak at 520 nm (black line) and the CTPR164cys-AuNPs conjugate (red line). | ||
Amine-PEG AuNP were conjugated to CTPR164Cys proteins using sulfo-SMCC conjugation chemistry. As show in Fig. 2C, the NHS ester group of the sulfo-SMCC linker reacts with amine groups of the amine-PEG AuNPs while its maleimide group reacts orthogonally with the cysteines in the protein scaffold. After conjugation, the CTPR164Cys-AuNPs complexes were purified from unbound AuNPs by affinity chromatography. The eluate that exhibited a pink/purple color, characteristic of the AuNPs, was analyzed by size exclusion chromatography (Fig. 2D). The elution time for the CTPR164Cys-AuNPs was the shortest, which confirmed AuNPs incorporation to the CTPR164Cys that resulted in a larger hydrodynamic radius compared to CTPR164Cys, and to the AuNPs. Moreover, the UV-visible absorption spectrum of the CTPR164Cys-AuNPs conjugates showed the AuNPs LSPR peak at 510 nm (Fig. 2E).
The conjugation efficiency was analyzed by transmission electron microscopy (TEM) (Fig. 3A). TEM images were acquired and the distribution of the AuNPs showed the presence of spatially limited assemblies made of 3 or 4 particles, with a disposition in agreement with the arrangement encoded by the engineered CTPR164Cys scaffold (Fig. 3A, left panel). Such assembled nanostructures were not observed in the original amine-PEG functionalized AuNPs, for which mostly large aggregates of particles are observed (Fig. 3A, right panel). The CTPR164Cys-AuNPs conjugates also revealed some larger assemblies composed of more than 4 AuNPs per groups, which could be due to the linkage of two or more proteins through the AuNPs, as the activated AuNP-SMCC intermediates are not monovalent and could potentially be grafted by two or more proteins. However, the conjugates assemblies and the control-particle before conjugation show different behavior, with predominance of 1–4 assemblies in the conjugates, whereas predominance of large nonspecific aggregates in the control (Fig. S3†).
The CTPR164Cys-AuNPs nanoscale structure was explored using scanning tunneling microscopy (STM) at bias voltages between 0.1 V and 1.5 V and at room temperature (Fig. 3B). Conjugated CTPR164Cys-AuNPs at 1 nM were deposited by drop casting over a freshly flame-annealed gold surface (see Experimental for details). Groups of four AuNPs disposed in good agreement with the disposition of the four cysteine residues in the designed protein were observed. According to image profiles, the distances between gold nanoparticles are slightly larger than expected from the model based on CTPR crystal structure, which can be explained by the flexibility of the CTPR spring-like backbone.55 Moreover, since STM images are based on the current measured between the tip and the sample, the obtained STM images already confirm the conductivity of the AuNPs attached to the scaffold protein.
CTPR164Cys and CTPR164Cys-AuNPs solid state assemblies were generated taking advantage of CTPR protein intrinsic interactions.39 A 300 μM protein solution was deposited into a planar surface and a transparent solid film was formed after drop drying. X-ray diffraction (XRD) was used to check internal order in the films (Fig. 2C). The XRD spectrum of the CTPR164Cys film showed two peaks at 2θ = 9.6° (001) and 20.0° (002) which could correspond to a lamellar packing of the protein with a periodical d-spacing of 9.1 Å, in agreement with previously described CTPR protein films.11 CTPR164Cys-AuNPs films also showed a peak at 2θ = 20.1°, related to the protein packing. In addition, these AuNPs-doped films exhibited two peaks which are not present in the pure protein film. A first peak at 2θ = 37.7° assigned to the crystal structure of AuNPs56 and a second peak at 2θ = 3.6° which corresponds to a periodical d-spacing of 2.3 nm. This spacing is attributed to the arrangement of gold nanoparticles within the solid film. It suggests a tighter packing of the AuNPs in the 3D film than the one observed by STM in a single molecule arrangement (Fig. 3B). To explore further the packing of the gold nanoparticles within the CTPR164Cys-AuNPs films, STM was performed (Fig. 3D). A 1 μM solution of CTPR164Cys-AuNPs conjugates (1000 times higher than the previous concentration for single molecule imaging) was deposited directly onto a gold surface. After solvent evaporation, a thin layer of CTPR164Cys-AuNPs was formed. STM images of the formed layer showed rows of AuNPs homogeneously distributed within the film. AuNPs are closer than expected from linear protein packing, as the proteins intercrossed minimizing AuNPs distances. The average inter-particle distance between AuNPs centers in the film is 4.2 ± 0.3 nm (Fig. 3D) with a nanoparticle gap of ∼ 0.6 nm. This smaller interparticle distance measured in the 2D film arrangement when compared with the inter-particle distance determined for individual CTPR164Cys-AuNPs (Fig. 3B), is in agreement with the tighter packing in the solid film previously determined by XRD (Fig. 3C). However, the inter-particle distance in film reported by XRD (2.3 nm) and by STM (4.2 nm) slightly differ since XRD reports on 3D arrangement and STM on 2D.
Charge transport properties of both CTPR16 protein and CTPR164Cys-AuNPs conjugate films were studied by measuring current–voltage (I–V) curves in the (−1 V, +1 V) interval (Fig. 4). The absolute value of the applied bias was limited to 1 V, which is smaller than thermoneutral voltage for water electrolysis.57 Films were formed onto Si/SiO2 wafers with interdigitated gold electrodes on top using different protein and conjugate batches to ensure reproducibility. The electrodes described a channel with a width W to length L ratio (W/L) of approximately 600, which minimized the effect of edge currents between the electrodes (see Experimental for details). At low applied voltage, (−0.3 V, 0.3 V) interval, films showed an ohmic behavior (constant G in Fig. 4B). In this range, protein films showed an average conductivity value of 140 ± 19 nS m−1, where current was transported through 20 μm of protein film according to the inter-distance length (L) between the electrodes. Conductivity was calculated using the equation σ = G × L/(t × W), where G = I/V is the conductance obtained from the I–V curve slope. The thickness of each film (t) was measured by atomic force microscopy (AFM) and W and L were defined by the electrode design (vide supra). In the case of the films doped with AuNPs, their conductivity increased by 4 orders of magnitude, with an average value of 1.37 ± 0.35 mS m−1 in the same applied voltage range. Measurements were performed across sets of independent batches of proteins and AuNP conjugates with high reproducibility of the current measurements when scaling the results by the film thickness (different curves in Fig. 4A). To better compare the profile of the curves, Fig. 4B shows the voltage dependence of the conductance normalized by its value in the low voltage regime (G/Glow). The G/Glow-V curves are symmetrical for both the CTPR164Cys and CTPR164Cys-AuNPs films. The conductance in the CTPR164Cys films showed a significant increase with the applied voltage, different from the behavior observed for CTPR164Cys-AuNPs films. Assuming that the edge resistivity is similar in the electrodes for all the films, these differences in the curve profile indicate differences in the main charge transport mechanism between the films with and without AuNPs. The normalized conductance of the CTPR164Cys films showed an exponential increase at absolute values of voltage ≥0.4 V. This non-linear profile is consistent with the presence of charge-carrier blocking at the electrical contacts, which is characteristic of protonic conductivity.27,41 This observation is in agreement with previously reported protonic charge transport for CTPR protein films.41 On the contrary, the CTPR164Cys-AuNPs films showed a quasi-linear increase in conductance for most of the explored voltage range (−1 V, 1 V), indicating a difference in their charge transport properties. The enhancement of the conductivity observed for the films with AuNPs is consistent with electron-like charge transport within the films. The inter-particle distance measured in the AuNP-doped films is compatible with hopping electron transfer between the AuNPs,58,59 in addition the described packing distance between consecutive layers within the protein films51,60 is also compatible with hopping electron transfer between layers. These effects would facilitate electron transport, thus increasing the conductivity along the CTPR164Cys-AuNPs films. This hypothesis is in agreement with the observations extracted from the G/Glowvs. V curves. A precise characterization of the charge transport mechanism through the protein films with and without AuNPs would require deeper studies combining several techniques and an analysis of the temperature and humidity dependence of the conductivity. However, the overall results shown here point to a mainly protonic charge transport in the CTPRs films and the emergence of electronic charge transport in the CTPR164Cys-AuNPs films.
Our study shows that a rigid superhelical scaffold, i.e. the engineered CTPR protein, can be used to regularly space up to 4 AuNPs per protein. Solid protein films were then formed, based on the self-assembly properties of CTPR proteins. Such films formed with pure protein or CTPR164Cys-AuNP conjugates exhibit long-range conductivity. CTPR164Cys-AuNPs films display a conductivity value of 1.37 ± 0.35 mS m−1, four orders of magnitude larger than the one measured for protein films. Furthermore, AuNPs seem to promote a change in the charge transport properties, as reflected by differences in the I–V curve profiles. The results presented are consistent with different charge transfer mechanisms: a mainly protonic mechanism for the CTPR films and an additional electronic component for the AuNPs-doped films. The latter favored by the short AuNP inter-particle gap observed in the CTPR164Cys-AuNPs films (∼0.6 nm), which is suitable for hopping electron transfer between AuNPs within the films. Although the conductive mechanisms along CTPR and CTPR164Cys-AuNPs films need further studies, our work opens the way to new designs and understandings of long-range conductivity through protein, which is both fundamentally interesting and potentially significant for the development of bioelectronics materials. We also demonstrate a generic approach for grafting any kind of nanoparticle on the scaffold of the proteins without altering its structure. Given the modular nature and the geometry of CTPR proteins, other inorganic nanomaterials could be arranged with adjustable inter-particle distances, making our approach a versatile tool for other applications such as optical coupling.
Footnotes |
| † Electronic supplementary information (ESI) available: Figure. See DOI: 10.1039/d1nr00238d |
| ‡ These authors contributed equally to this work. |
| This journal is © The Royal Society of Chemistry 2021 |