Open Access Article
Christopher A.
Wootton
,
Carlos
Sanchez-Cano
,
Andrea F.
Lopez-Clavijo
,
Evyenia
Shaili
,
Mark P.
Barrow
,
Peter J.
Sadler
* and
Peter B.
O'Connor
*
Department of Chemistry, University of Warwick, Gibbet Hill Road, Coventry CV4 7AL, UK. E-mail: p.oconnor@warwick.ac.uk; p.j.sadler@warwick.ac.uk; Fax: +44 (0)24 76151009; Fax: +44 (0)24 765 23819; Tel: +44 (0)24 76151008 Tel: +44 (0)24 765 23818
First published on 12th February 2018
Octahedral platinum(IV) complexes such as trans,trans,trans-[Pt(N3)2(OH)2(pyridine)2] (1) are stable in the dark, but potently cytotoxic to a range of cancer cells when activated by UVA or visible light, and active in vivo. Photoactivation causes the reduction of the complex and leads to the formation of unusual Pt(II) lesions on DNA. However, radicals are also generated in the excited state resulting from photoactivation (J. S. Butler, J. A. Woods, N. J. Farrer, M. E. Newton and P. J. Sadler, J. Am. Chem. Soc., 2012, 134, 16508–16511). Here we show that once photoactivated, 1 also can interact with peptides, and therefore proteins are potential targets of this candidate drug. High resolution FT-ICR MS studies show that reactions of 1 activated by visible light with two neuropeptides Substance P, RPKPQQFFGLM-NH2 (SubP) and [Lys]3-Bombesin, pEQKLGNQWAVGHLM-NH2 (K3-Bom) give rise to unexpected products, in the form of both oxidised and platinated peptides. Further MS/MS analysis using electron-capture dissociation (ECD) dissociation pathways (enabling retention of the Pt complex during fragmentation), and EPR experiments using the spin-trap DEPMPO, show that the products generated during the photoactivation of 1 depend on the amino acid composition of the peptide. This work reveals the multi-targeting nature of excited state platinum anticancer complexes. Not only can they target DNA, but also peptides (and proteins) by sequence dependent platination and radical mechanisms.
Complex 1 (scheme 1) and its analogues exhibit little activity in the dark, yet possess potent antiproliferative activity in vitro against a wide range of cancer cells upon irradiation with visible light,8 and are also active in vivo towards oesophaegeal cancer after short time exposures to blue light.9 Furthermore, they do not rely on the conversion of 3O2 to 1O2 to kill cancer cells, as sensitisers used in photodynamic therapy (e.g. based on tetrapyrroles),10 which potentially can allow them to function effectively under the hypoxic conditions found in tumors.7,11,12
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| Scheme 1 Trans,trans,trans-[Pt(N3)2(OH)2(py)2] (complex 1), the photo-activatable prodrug used in this study, along with illustrative photo-decomposition pathways leading to PtII products which can form bonds/inter-strand cross-links on DNA.1 | ||
Complex 1 is more active than its cis isomer, and not cross resistant with cisplatin.8 Its mechanism of action seems to involve the platination of DNA by Pt(II) photoproducts, forming inter-strand DNA cross-links, which are more difficult to repair than DNA-adducts formed by cis-analogues.11 However, radicals are also generated during irradiation of the complex with visible light.1,6,13,14 Initially it was believed that the mechanism of photodecomposition of 1 simply involved excitation of the ligand(azide)-to-metal (PtIV) charge-transfer band, with one-electron transfer from each azide ligand giving rise to PtII and two azidyl radicals which can combine to form three molecules of N2.1 However, the detailed photodecomposition pathways are complex, can lead to the production of azidyl radicals, singlet oxygen (even in absence of gaseous O2), nitrenes, and hydroxyl radicals,1,6,13,14 and depend strongly on the biomolecules present. For example, loss of N2 from a bound azide can lead to nitrene intermediates which might attack thioethers such as the side-chain of methionine.15 Additionally, the production of azidyl radicals is quenched in the presence of tryptophan (but not other amino acids such as glycine or tyrosine).14 This suggests that 1 might interact with peptides and proteins inside cells, following different photodecomposition pathways depending on their sequences. However, the interaction of photoactivated 1 with peptides has yet to be studied.
Tandem mass spectrometry (MS/MS) analysis has been successful in studying an array of peptides and proteins while retaining vital post-translational modifications (PTM's).16–18 This technique has been used to investigate the interactions of biomolecules with platinum drugs such as cisplatin,19–21 transplatin,22 oxaliplatin,23 or diiodido–platinum complexes,24 but also ruthenium,25–28 and organometallic iridium and osmium complexes.29,30 Electron-based dissociations are particularly useful when studying metallodrug interactions where the top-down approach has allowed the characterisation of entire protein sequences and the unambiguous determination of multiple binding sites for metallodrugs on various proteins,21,31–33 without further chemical modifications such as digestion which can disrupt/dissociate modifications. Electron capture dissociation (ECD) MS/MS is particularly effective for PTM analysis due to its non-ergodic character34 and its ability to fragment species without loss of fragile PTM's.35
Herein, we use ultra-high resolution Fourier Transform Ion Cyclotron Resonance Mass Spectrometry (UHR-FT-ICR MS) to study the interaction of trans,trans,trans-[Pt(N3)2(OH)2(pyridine)2] (1) with two model peptides (neuropeptides); Substance P, RPKPQQFFGLM-NH2 (SubP), and [Lys]3-Bombesin, pyrQKLGNQWAVGHLM-NH2 (K3-Bom). Both of which have amidated C-termini. Our experiments show for the first time that photoactivation of 1 leads to both amino-acid-specific platination and oxygenation of peptides.
Photoactivation of 1 in presence of SubP or K3-Bom was first followed using UV-vis spectroscopy (Fig. S1†). Complex 1 exhibits an intense azide-to-Pt(IV) charge-transfer band (λmax = 295 nm) which can be used to monitor the photodecomposition of the complex.1SubP had little apparent effect on the rate of decomposition of 1. However, K3-Bom slowed this process, and induced the formation of a new peak at ca. 250 nm.
Using nESI-FT-ICR-MS, we analysed reaction mixtures of 1+SubP and 1+K3-Bom (0.5–1 drug
:
peptide) irradiated with blue light (463 nm; 30–120 min) to activate 1. Peaks for a total of 8 and 12 products were assigned for the reactions of 1+SubP and 1+K3-Bom, respectively (Fig. 1, Table S2†). Most can be assigned to different platinated adducts of the peptides. For the reaction between 1+SubP, only mono-platinated adducts were observed, containing the modifications {Pt(py)(OH)(N3)}, {Pt(py)2(N3)}, {Pt(N3),}, and {Pt(py)2} with reasonable intensity, and {Pt(py)2(OH)} at low intensity. However, analysis of the reaction 1+K3-Bom showed both mono- and di-platinated adducts, containing {Pt(py)2}, {Pt(py)2(N3)}, {Pt(py)2(OH)}, and both {Pt(py)2} and {Pt(py)2(N3)} modifications simultaneously.
Interestingly, both unmodified and platinated adducts of the peptides were found to be oxidised when irradiated in presence of 1. SubP species had the addition of one oxygen (by exact mass), while up to three oxygen atoms were found on K3-Bom species. Similar species were not observed upon irradiation of the peptides in absence of 1, or when 1 + peptide mixtures where not irradiated with blue light.
ECD MS/MS analysis of the platinated K3-Bom species is summarised in Fig. 2. Full assignment lists and ECD MS/MS spectra are in Tables S2–S4 and Fig. S2.†K3-Bom contains methionine, histidine and lysine residues, all potential S or N donor ligands. Pt(II) complexes are known to bind preferentially at the S of Met, followed by His N.20,32,38–40 Pt–S bonds are usually strong, and survive harsh pH digestions and high energy gas phase dissociations in tandem MS experiments.20 However, {Pt(py)2(N3)}+ and {Pt(py)2(OH)}+ modifications from mono-platinated K3-Bom adducts were unambiguously bound at the His12 residue, despite the C-terminal Met.14 MS/MS analysis of [K3-Bom+Pt(py)2]2+ species yielded no sequence-informative fragments, only ligand and/or amino acid side chain loss peaks. Such behaviour has been attributed to extended cyclic structures which can disrupt usual MS/MS fragmentation.41 However, the presence of metal centres presents unique challenges to MS and MS/MS peptide/protein analysis.41–44
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| Fig. 2 Platinated K3-Bom peptide species observed and fragmented by ECD MS/MS; coloured squares indicate a modification observed on the particular fragment. These modifications can be readily assigned to single amino acid residues. Fully annotated spectra are shown in Fig. S2.† | ||
The charged Pt centre altered the ECD MS/MS fragmentation pattern by providing a fixed charge at the point of interaction (e.g. His11 of K3-Bom), but also enhanced side chain losses of amino acid groups present. Electron capture at the PtII centre/electron transfer of previously captured electrons on the peptide also caused additional ligand loss from the bound complex and additional fragmentations from amino acid residues, including unique side chain losses from methionine residues (Scheme S1†). CAD MS/MS of platinum complex-containing species caused gas-phase dissociation of the platinum-bound ligands, even at low energies (<5–7 V), creating a reactive PtII centre, which quickly cyclised with available peptide groups and produced uninformative fragmentation spectra.
Still, ECD MS/MS of [K3-Bom+Pt(py)2+H]3+ species produced abundant backbone fragmentation (Fig. S2c†). This showed simultaneous binding at His12 and Met14 residues of {Pt(py)2} photoproducts, producing a small cyclic region in the modified peptide species.
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| Fig. 3 Platinated SubP peptide species observed and fragmented by ECD MS/MS; coloured squares indicate a modification on the particular fragment. Fully annotated spectra are shown in Fig. S3.† | ||
ECD MS/MS shows that [SubP+{Pt(py)(OH)(N3)}+2H]2+, [SubP+{Pt(py)2(N3)}+H]2+, [SubP+{Pt(N3)+H]2+, and [SubP+{Pt(py)2+H}]3+ species are platinated within the four N-terminal amino acids of the peptide (Fig. 2, Tables S5–7, Fig. S3†). [SubP+{Pt(py)2(OH)}+H]2+ species were observed only at very low intensity at all irradiation times, and reliable MS/MS fragmentation could not be obtained. ECD induced fragmentation of the N-terminal region of SubP (RPKP) is restricted by proline residues,45 and the overall structure is held together via the “proline effect”.46 This hampered determination of the platination sites of SubP. However, the fragmentation allowed the binding site for 1 to be located between Lys3 and Pro.4
Interestingly, spectra from 1+K3-Bom mixtures after different irradiation times (30, 60, 90 or 120 min) always contained the same photoproducts, increasing their overall, but not their relative intensity at longer irradiation times. However, irradiation of 1+SubP mixtures for different times showed preferential formation of different products at different times. [SubP+Pt(py)(OH)(N3)+2H]2+ was the major product at short irradiation times, while longer irradiations of 1+SubP mixtures led to further ligand release, with [SubP+Pt(N3)+H]2+ species increasing over time. This suggests that photoreactions of 1 can continue after the formation of Pt(II) species.
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| Fig. 4 Oxidised peptide species observed and fragmented by ECD MS/MS. Oxidative modifications (indicated by red squares) can be readily located on single amino acid residues (highlighted). Fully annotated tandem mass spectra can be found in the ESI (Fig. S5†). | ||
Both mono- and di-oxidised K3-Bom species showed a two-product fragment distribution, relating to oxidation at Met14 or Trp8 for mono-oxidised species, and to single oxidation of both Met14 and Trp8 residues, or double oxidation of Trp8 for di-oxidised species (Fig. 4, Tables S9–11, Fig. S5b–c†). [K3-Bom+3O+2H]2+ species showed both oxidation at Met14 and double oxidation of Trp8 residues. Tryptophan oxidation is known to give rise to a variety of side-chain modifications, which are dependent of the nature of the oxidising agent.49,50 Hydroxy-tryptophan (HTRP) and N-formyl kynurenine(NFK) are formed when the 5-membered indole ring of tryptophan is attacked by hydroxyl radicals, while kynurenine (KYN) and 3-hydroxy-kynurenine (3OH-KYN) arise from singlet oxygen-induced oxidation (Scheme 2). These reaction products have different mass changes compared to the original amino acid, and can be used to provide insights into the mechanism of the oxidation itself.50
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| Scheme 2 Possible oxidation products arising from 1O2 (KYN and 3OH-KYN) and radical (HTRP and NFK) oxidation of a tryptophan side-chain50,51 along with corresponding calculated mass changes for the modifications. Singlet oxygen induced processes are shown in red, while those induced by hydroxyl radical processes are shown in blue. | ||
UHR-FT-ICR MS spectra of 1+K3-Bom mixtures (Fig. 1b) and the corresponding MS/MS spectra (Fig. S2a–d†) show clearly that tryptophan oxidation leads to the formation of HTRP and NFK for the mono and di-oxidised species, respectively (+15.994915 Da and +31.989829 Da mass shifts). This suggests that hydroxyl radicals are generated when 1 is photoactivated in the presence of K3-Bom, and are responsible for the oxidation of methionine and tryptophan residues. Electron transfer from an axial hydroxido ligand and an azido ligand to PtIV can result in retention of one N3 ligand in the PtII photo-product (Fig. 1).
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| Fig. 5 EPR spectra showing the radicals trapped by DEPMPO during the photoactivation (with blue visible light) of (a) 1 (b) 1+SubP and (c) 1+K3-Bom. Inset shows simulations of corresponding spectra and the structures of the spin-trapped azidyl radicals (a + b) and oxidised DEPMPO arising from attack by the high concentration of OH radicals produced via photoactivation of 1 with K3-Bom (c).52 | ||
Oxidised adducts of the DEPMPO trap were observed (DEPMPOX, Fig 5c). Such species can be formed by oxidation of DEPMPO-OH adducts,52 and arising from the attack by hydroxyl radicals. These studies therefore confirm that the photoreaction pathways for complex 1 can therefore not only involve electron transfer from azide ligand to PtIV but also from an hydroxido ligand to form N3˙ and HO˙ radicals.
:
1
:
0.13 (peptide
:
drug
:
Trp); 31 μM Trp) were irradiated with blue light (463 nm) for 60 and 120 min, respectively, min and monitored by nESI-FT-ICR-MS (Table S13, Fig. S7†). Addition of Trp had little effect on the type of species produced and peptide platination observed in the photoreaction of SubP+1. However, Trp reduced the level of peptide oxidation by 29% and 95% for non-platinated and platinated-oxidised species, respectively. Trp affected more dramatically the photoreaction of K3-Bom+1 mixtures. Every oxidised and platinated species was reduced in intensity (except [K3-Bom+O]2+ and [K3-Bom+3O]2+) by 32–98%. This suggests that the Trp residue in K3-Bom itself could play a role in determining the extent of platination of the peptide.
The role of tryptophan as a redox-active amino acid,53 and the formation of HTRP and NFK species suggest that radical-based processes might play an important role in the mechanism of action of this class of PtIV photoactivated complexes. Such production of oxidative stress may provide some selectivity for attack on cancer cells versus normal cells, since cancer cells have malfunctioning mitochondria and are particularly susceptible to redox stress.54–56
:
1 drug
:
peptide mol ratio. The samples were then irradiated under 463 nm (blue visible) light at 298 K for various times, before being diluted to MS concentrations (ca. 1 μM) and either analysed immediately or frozen at −80 °C prior to MS analysis. Freshly prepared samples were compared to those frozen for one to several weeks and showed no observable variation in the mass spectra obtained. Reactions involving tryptophan were carried out using similar procedures as above together with the addition of aqueous tryptophan solution (1 mM) to peptide + 1 solutions to achieve a mol ratio of 0.5
:
1
:
0.125 (drug
:
peptide
:
tryptophan), i.e. concentration of tryptophan was 1/8th of drug concentration, as used previously by Butler et al.14
For ECD MS/MS analysis; the species of interest were isolated in the first quadrupole, externally accumulated in the collision cell for 0.1–7 s and then transferred to the infinity cell for Electron Capture Dissociation (ECD) fragmentation and detection. Ions in the infinity cell were irradiated with 1.3–1.6 eV electrons from a 1.5 A hollow cathode dispenser for 50–600 ms prior to detection.
MS/MS spectra were internally calibrated using the minimal number of unmodified (peptide spectra) or modified (Pt adduct spectra) c/z ions and the charge reduced species [M + nH]n−1+˙ where possible (species used for calibration are marked). A dual-spray nESI experiment was also conducted using the [K3-Bom+2H]2+ ion and ions from Agilent Tune mix, utilising an in-cell isolation (Multi-CHEF)57 and identical ECD parameters to validate the internal calibration of the MS/MS spectra. Similar standard deviations were found for the ECD fragmentation spectra when calibrated with either fragment ions or with tune-mix peaks (see ESI Fig. S8 and Table S14†). This dual-spray Multi-CHEF ECD approach was also used for some 1 + peptide reaction product ECD spectra to improve the internal calibration (spectra and calibration peaks marked accordingly).
Footnote |
| † Electronic supplementary information (ESI) available: Detailed MS data and discussion of effects of Pt on MS/MS fragmentation, as Scheme S1, Tables S1–S14 and Fig. S1–S10. See DOI: 10.1039/c7sc05135b |
| This journal is © The Royal Society of Chemistry 2018 |